Wall clock time and date at job start Tue Mar 31 2020 03:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46496 * 119.99896 * 2 1 4 4 C 1.52994 * 109.47253 * 270.00133 * 3 2 1 5 5 N 1.46500 * 109.47474 * 180.02562 * 4 3 2 6 6 C 1.36935 * 120.00399 * 180.02562 * 5 4 3 7 7 H 1.08002 * 119.99799 * 359.97438 * 6 5 4 8 8 C 1.38814 * 119.99833 * 179.97438 * 6 5 4 9 9 N 1.31618 * 120.00250 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99844 * 179.97438 * 8 6 5 11 11 H 1.48508 * 109.46881 * 60.00194 * 10 8 6 12 12 H 1.48503 * 109.47144 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.47255 * 300.00434 * 10 8 6 14 14 C 1.34777 * 119.99832 * 180.02562 * 2 1 3 15 15 O 1.21278 * 119.99854 * 180.02562 * 14 2 1 16 16 C 1.50703 * 120.00161 * 359.97438 * 14 2 1 17 17 C 1.50701 * 109.47064 * 180.02562 * 16 14 2 18 18 C 1.38244 * 119.97486 * 269.72932 * 17 16 14 19 19 C 1.38202 * 120.02338 * 179.72838 * 18 17 16 20 20 C 1.38457 * 119.97200 * 0.56577 * 19 18 17 21 21 F 1.35099 * 120.02649 * 179.68648 * 20 19 18 22 22 C 1.38455 * 119.95159 * 359.70550 * 20 19 18 23 23 C 1.38200 * 119.97412 * 0.02562 * 22 20 19 24 24 H 1.08999 * 109.47333 * 269.99341 * 1 2 3 25 25 H 1.08997 * 109.47024 * 30.00155 * 1 2 3 26 26 H 1.09000 * 109.46875 * 149.99915 * 1 2 3 27 27 H 1.09000 * 109.47082 * 30.00019 * 3 2 1 28 28 H 1.09004 * 109.46754 * 150.00286 * 3 2 1 29 29 H 1.09001 * 109.47335 * 300.00356 * 4 3 2 30 30 H 1.08997 * 109.47465 * 59.99775 * 4 3 2 31 31 H 0.97008 * 119.99214 * 359.97438 * 5 4 3 32 32 H 0.97001 * 120.00028 * 180.02562 * 9 8 6 33 33 H 1.09002 * 109.47152 * 60.00245 * 16 14 2 34 34 H 1.09001 * 109.46980 * 300.00345 * 16 14 2 35 35 H 1.07996 * 119.98449 * 359.97438 * 18 17 16 36 36 H 1.07995 * 120.01101 * 180.25281 * 19 18 17 37 37 H 1.08001 * 120.01453 * 179.97438 * 22 20 19 38 38 H 1.08008 * 119.98737 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4424 5 7 3.1855 2.9788 -1.4425 6 6 3.5274 3.5720 -2.6284 7 1 3.2571 3.1046 -3.5637 8 6 4.2215 4.7742 -2.6283 9 7 4.5514 5.3436 -1.4884 10 14 4.6887 5.5831 -4.2460 11 1 3.4592 5.8787 -5.0247 12 1 5.4181 6.8478 -3.9746 13 1 5.5593 4.6661 -5.0247 14 6 2.1389 -1.1672 -0.0005 15 8 3.3517 -1.1672 -0.0001 16 6 1.3854 -2.4723 -0.0005 17 6 2.3647 -3.6178 -0.0005 18 6 2.8092 -4.1464 -1.1980 19 6 3.7116 -5.1932 -1.1992 20 6 4.1614 -5.7200 -0.0004 21 9 5.0387 -6.7475 -0.0003 22 6 3.7112 -5.1935 1.1983 23 6 2.8131 -4.1431 1.1970 24 1 -0.3634 -0.0001 1.0276 25 1 -0.3633 0.8899 -0.5138 26 1 -0.3633 -0.8900 -0.5139 27 1 1.6084 2.0283 0.5138 28 1 3.1500 1.1383 0.5138 29 1 3.0415 0.9508 -1.9563 30 1 1.5001 1.8407 -1.9563 31 1 3.4279 3.3988 -0.6023 32 1 5.0361 6.1839 -1.4884 33 1 0.7584 -2.5299 -0.8903 34 1 0.7590 -2.5302 0.8897 35 1 2.4542 -3.7387 -2.1329 36 1 4.0619 -5.6033 -2.1349 37 1 4.0611 -5.6039 2.1340 38 1 2.4614 -3.7324 2.1320 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567597692.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:42 Heat of formation + Delta-G solvation = -64.546510 kcal Electronic energy + Delta-G solvation = -20868.647185 eV Core-core repulsion = 17432.032202 eV Total energy + Delta-G solvation = -3436.614983 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.90893 -41.17892 -39.68421 -37.34010 -36.04200 -33.86998 -33.12134 -32.08081 -30.17115 -28.22856 -27.28361 -25.49722 -24.02739 -23.47553 -22.47940 -20.22442 -19.19058 -18.65168 -18.05564 -17.51415 -17.26823 -16.83292 -16.59402 -16.29796 -16.08295 -15.33187 -15.25822 -15.12620 -14.83293 -14.50255 -14.36696 -14.26722 -13.86002 -13.22066 -13.12909 -13.03784 -12.92513 -12.86971 -12.65896 -12.57252 -12.26386 -12.17234 -11.91941 -11.88200 -10.98286 -10.88389 -10.04248 -9.64757 -9.53678 -9.07835 -7.98909 -5.29856 0.12277 0.30206 1.45343 1.49625 1.55678 1.67906 2.01562 2.54439 2.66255 3.29721 3.34251 3.64098 3.76076 3.78623 3.97506 4.07697 4.21556 4.23089 4.26503 4.32670 4.42609 4.57701 4.62808 4.63429 4.81412 4.97673 4.98752 5.02648 5.07838 5.11696 5.16237 5.25961 5.41665 5.52895 5.56441 5.93400 6.22590 6.47587 7.24110 7.28610 8.00882 8.25737 9.24325 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.021714 B = 0.003191 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.193072 B = 8771.213337 C = 9521.375030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.612 5.612 3 C 0.122 3.878 4 C 0.149 3.851 5 N -0.744 5.744 6 C -0.253 4.253 7 H 0.073 0.927 8 C -0.073 4.073 9 N -0.968 5.968 10 Si 0.978 3.022 11 H -0.272 1.272 12 H -0.292 1.292 13 H -0.280 1.280 14 C 0.502 3.498 15 O -0.585 6.585 16 C -0.088 4.088 17 C -0.085 4.085 18 C -0.087 4.087 19 C -0.162 4.162 20 C 0.071 3.929 21 F -0.151 7.151 22 C -0.159 4.159 23 C -0.083 4.083 24 H 0.081 0.919 25 H 0.073 0.927 26 H 0.103 0.897 27 H 0.094 0.906 28 H 0.056 0.944 29 H -0.002 1.002 30 H 0.031 0.969 31 H 0.375 0.625 32 H 0.254 0.746 33 H 0.135 0.865 34 H 0.141 0.859 35 H 0.145 0.855 36 H 0.146 0.854 37 H 0.150 0.850 38 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.002 -21.901 5.693 26.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.345 5.345 3 C -0.002 4.002 4 C 0.022 3.978 5 N -0.388 5.388 6 C -0.385 4.385 7 H 0.091 0.909 8 C -0.265 4.265 9 N -0.618 5.618 10 Si 0.806 3.194 11 H -0.198 1.198 12 H -0.218 1.218 13 H -0.207 1.207 14 C 0.292 3.708 15 O -0.464 6.464 16 C -0.127 4.127 17 C -0.086 4.086 18 C -0.105 4.105 19 C -0.181 4.181 20 C 0.052 3.948 21 F -0.130 7.130 22 C -0.178 4.178 23 C -0.101 4.101 24 H 0.099 0.901 25 H 0.092 0.908 26 H 0.121 0.879 27 H 0.112 0.888 28 H 0.074 0.926 29 H 0.016 0.984 30 H 0.049 0.951 31 H 0.207 0.793 32 H 0.062 0.938 33 H 0.153 0.847 34 H 0.158 0.842 35 H 0.162 0.838 36 H 0.164 0.836 37 H 0.168 0.832 38 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -12.366 -21.929 5.519 25.773 hybrid contribution 1.113 0.693 -0.545 1.420 sum -11.252 -21.236 4.974 24.542 Atomic orbital electron populations 1.22195 0.76274 1.05039 1.03848 1.47936 1.08853 1.04696 1.72977 1.21294 0.97307 0.85639 0.96005 1.20955 0.94210 0.86654 0.96003 1.42411 1.67658 1.23141 1.05557 1.19568 1.29285 1.02667 0.86981 0.90871 1.25636 1.01566 0.98833 1.00504 1.69811 1.45917 1.19908 1.26204 0.85153 0.78098 0.77296 0.78845 1.19794 1.21757 1.20669 1.21395 0.87760 0.86408 0.75214 1.90751 1.16606 1.87961 1.51115 1.20779 0.96936 0.86498 1.08465 1.19681 0.98908 0.96517 0.93472 1.21152 0.95746 0.94666 0.98937 1.21327 1.00059 0.99109 0.97557 1.18007 0.92607 0.88471 0.95681 1.91461 1.67094 1.56885 1.97540 1.21350 1.00025 0.98982 0.97439 1.21165 0.95557 0.94493 0.98850 0.90092 0.90840 0.87865 0.88809 0.92591 0.98415 0.95097 0.79301 0.93751 0.84735 0.84166 0.83757 0.83648 0.83234 0.83057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.89 10.24 127.77 1.31 2.20 16 2 N -0.61 -15.07 2.87 -846.77 -2.43 -17.50 16 3 C 0.12 4.11 5.52 86.38 0.48 4.59 16 4 C 0.15 6.35 6.58 86.38 0.57 6.92 16 5 N -0.74 -39.83 5.60 -343.46 -1.92 -41.75 16 6 C -0.25 -14.75 9.99 84.03 0.84 -13.92 16 7 H 0.07 4.10 7.83 -2.91 -0.02 4.08 16 8 C -0.07 -4.30 5.50 84.86 0.47 -3.83 16 9 N -0.97 -60.44 13.06 21.65 0.28 -60.15 16 10 Si 0.98 46.91 29.55 68.60 2.03 48.94 16 11 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 12 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 13 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 14 C 0.50 13.26 7.67 87.66 0.67 13.93 16 15 O -0.58 -22.43 15.61 -3.02 -0.05 -22.48 16 16 C -0.09 -1.28 4.38 29.10 0.13 -1.15 16 17 C -0.09 -1.64 4.37 -19.86 -0.09 -1.73 16 18 C -0.09 -1.75 9.70 22.26 0.22 -1.54 16 19 C -0.16 -3.44 10.03 22.31 0.22 -3.21 16 20 C 0.07 1.63 7.30 22.37 0.16 1.79 16 21 F -0.15 -3.65 17.27 44.97 0.78 -2.87 16 22 C -0.16 -3.18 10.03 22.31 0.22 -2.96 16 23 C -0.08 -1.54 9.70 22.26 0.22 -1.32 16 24 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 25 H 0.07 1.06 8.07 -2.39 -0.02 1.04 16 26 H 0.10 0.69 6.44 -2.39 -0.02 0.68 16 27 H 0.09 2.83 8.07 -2.39 -0.02 2.81 16 28 H 0.06 2.22 7.42 -2.39 -0.02 2.20 16 29 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 30 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.38 21.03 7.67 -92.70 -0.71 20.32 16 32 H 0.25 15.26 8.31 -92.71 -0.77 14.49 16 33 H 0.13 1.18 7.34 -2.39 -0.02 1.17 16 34 H 0.14 1.04 8.05 -2.39 -0.02 1.02 16 35 H 0.14 2.40 8.06 -2.91 -0.02 2.38 16 36 H 0.15 2.58 8.06 -2.91 -0.02 2.56 16 37 H 0.15 2.35 8.06 -2.91 -0.02 2.33 16 38 H 0.15 2.05 8.06 -2.91 -0.02 2.03 16 Total: -1.00 -78.87 332.16 4.45 -74.42 By element: Atomic # 1 Polarization: 21.26 SS G_CDS: 0.36 Total: 21.62 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: 5.42 Total: -0.22 kcal Atomic # 7 Polarization: -115.33 SS G_CDS: -4.07 Total: -119.41 kcal Atomic # 8 Polarization: -22.43 SS G_CDS: -0.05 Total: -22.48 kcal Atomic # 9 Polarization: -3.65 SS G_CDS: 0.78 Total: -2.87 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 2.03 Total: 48.94 kcal Total: -78.87 4.45 -74.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567597692.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.874 kcal (2) G-P(sol) polarization free energy of solvation -78.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds