Wall clock time and date at job start Tue Mar 31 2020 02:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47088 * 2 1 4 4 C 1.52999 * 109.47204 * 119.99740 * 2 1 3 5 5 N 1.46499 * 109.47519 * 175.00087 * 4 2 1 6 6 C 1.46503 * 120.00142 * 270.00296 * 5 4 2 7 7 C 1.34775 * 119.99780 * 89.99619 * 5 4 2 8 8 O 1.21570 * 120.00609 * 4.56392 * 7 5 4 9 9 C 1.47698 * 119.99975 * 184.56239 * 7 5 4 10 10 C 1.39662 * 120.16384 * 311.60888 * 9 7 5 11 11 C 1.37860 * 119.87691 * 180.02562 * 10 9 7 12 12 C 1.38455 * 120.21878 * 0.02562 * 11 10 9 13 13 C 1.38206 * 120.34144 * 359.97438 * 12 11 10 14 14 C 1.38319 * 120.11572 * 0.02562 * 13 12 11 15 15 F 1.35096 * 120.11209 * 180.02562 * 14 13 12 16 16 N 1.46501 * 109.47522 * 240.00031 * 2 1 3 17 17 C 1.36929 * 120.00371 * 84.99544 * 16 2 1 18 18 H 1.08008 * 119.99801 * 0.02562 * 17 16 2 19 19 C 1.38805 * 120.00373 * 180.02562 * 17 16 2 20 20 N 1.31617 * 120.00198 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 120.00224 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47004 * 59.99644 * 21 19 17 23 23 H 1.48505 * 109.47231 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.46937 * 300.00033 * 21 19 17 25 25 H 1.08999 * 109.47176 * 60.00061 * 1 2 3 26 26 H 1.08996 * 109.46958 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47099 * 300.00412 * 1 2 3 28 28 H 1.09000 * 109.47333 * 55.00140 * 4 2 1 29 29 H 1.09000 * 109.47320 * 294.99951 * 4 2 1 30 30 H 1.08995 * 109.47146 * 264.69061 * 6 5 4 31 31 H 1.09000 * 109.46723 * 24.69317 * 6 5 4 32 32 H 1.08997 * 109.46830 * 144.68715 * 6 5 4 33 33 H 1.07998 * 120.06418 * 0.03875 * 10 9 7 34 34 H 1.07998 * 119.89478 * 180.27945 * 11 10 9 35 35 H 1.08001 * 119.83622 * 179.97438 * 12 11 10 36 36 H 1.07996 * 119.94388 * 180.02562 * 13 12 11 37 37 H 0.97001 * 119.99704 * 265.00449 * 16 2 1 38 38 H 0.96999 * 120.00784 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5001 -0.8263 1.1907 6 6 4.1259 -1.9919 0.5613 7 6 4.2675 0.1493 1.7156 8 8 3.7511 1.0752 2.3106 9 6 5.7360 0.0937 1.5681 10 6 6.4269 -1.0835 1.8639 11 6 7.7977 -1.1287 1.7246 12 6 8.4916 -0.0110 1.2931 13 6 7.8170 1.1586 0.9979 14 6 6.4417 1.2195 1.1327 15 9 5.7824 2.3626 0.8436 16 7 2.0184 -0.6906 -1.1961 17 6 2.1492 -0.0076 -2.3757 18 1 1.8926 1.0405 -2.4242 19 6 2.6115 -0.6620 -3.5092 20 7 2.9237 -1.9393 -3.4503 21 14 2.7905 0.2700 -5.1182 22 1 3.7464 1.3918 -4.9366 23 1 3.2983 -0.6488 -6.1686 24 1 1.4685 0.8077 -5.5285 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.6054 -1.7198 1.2952 29 1 1.7517 -0.1582 2.1370 30 1 4.3682 -2.7308 1.3251 31 1 3.4364 -2.4287 -0.1611 32 1 5.0386 -1.6833 0.0517 33 1 5.8883 -1.9568 2.2009 34 1 8.3318 -2.0402 1.9490 35 1 9.5655 -0.0531 1.1866 36 1 8.3646 2.0265 0.6614 37 1 2.2491 -1.6318 -1.1525 38 1 3.2471 -2.3966 -4.2422 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571374879.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:28:11 Heat of formation + Delta-G solvation = -32.992576 kcal Electronic energy + Delta-G solvation = -22446.663745 eV Core-core repulsion = 19011.417044 eV Total energy + Delta-G solvation = -3435.246702 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -48.73088 -40.02859 -38.26020 -36.27776 -34.26896 -32.23072 -31.17468 -30.52669 -28.80354 -26.84308 -25.91158 -23.85368 -23.09953 -22.59887 -20.35536 -19.32113 -17.50214 -17.30509 -16.95836 -16.47734 -15.89345 -15.31917 -15.09036 -14.95372 -14.51805 -14.20573 -13.80492 -13.51703 -13.28467 -13.03977 -12.55686 -12.33922 -12.24092 -12.11673 -11.97859 -11.78384 -11.36581 -11.27514 -11.22655 -10.82413 -10.69481 -10.37258 -10.07787 -9.68983 -9.56645 -9.09147 -8.91363 -8.75535 -8.18178 -6.93939 -5.76896 -3.03358 0.85807 1.12810 2.88234 3.28227 3.44919 3.48683 3.50708 3.67404 4.22753 4.54316 4.60889 4.71453 4.80736 5.11222 5.19254 5.45805 5.54842 5.56012 5.60376 5.71123 5.79747 5.88839 5.94642 5.98011 6.09330 6.14240 6.23816 6.28273 6.31385 6.35851 6.69611 6.73322 6.81472 6.88481 7.15994 7.68506 7.74067 8.42391 8.44570 9.54079 10.09577 10.45666 11.46085 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.014616 B = 0.006440 C = 0.005461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.188044 B = 4346.512154 C = 5125.725291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.153 3.847 3 H 0.051 0.949 4 C 0.110 3.890 5 N -0.586 5.586 6 C 0.080 3.920 7 C 0.560 3.440 8 O -0.537 6.537 9 C -0.154 4.154 10 C -0.062 4.062 11 C -0.139 4.139 12 C -0.075 4.075 13 C -0.162 4.162 14 C 0.151 3.849 15 F -0.123 7.123 16 N -0.719 5.719 17 C -0.230 4.230 18 H 0.067 0.933 19 C -0.013 4.013 20 N -0.936 5.936 21 Si 0.903 3.097 22 H -0.287 1.287 23 H -0.291 1.291 24 H -0.287 1.287 25 H 0.056 0.944 26 H 0.047 0.953 27 H 0.038 0.962 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.047 0.953 31 H 0.091 0.909 32 H 0.072 0.928 33 H 0.139 0.861 34 H 0.134 0.866 35 H 0.134 0.866 36 H 0.139 0.861 37 H 0.381 0.619 38 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.185 -1.380 11.758 14.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.042 3.958 3 H 0.069 0.931 4 C -0.013 4.013 5 N -0.316 5.316 6 C -0.063 4.063 7 C 0.348 3.652 8 O -0.415 6.415 9 C -0.158 4.158 10 C -0.080 4.080 11 C -0.157 4.157 12 C -0.093 4.093 13 C -0.181 4.181 14 C 0.130 3.870 15 F -0.101 7.101 16 N -0.362 5.362 17 C -0.362 4.362 18 H 0.085 0.915 19 C -0.209 4.209 20 N -0.586 5.586 21 Si 0.735 3.265 22 H -0.214 1.214 23 H -0.217 1.217 24 H -0.214 1.214 25 H 0.075 0.925 26 H 0.066 0.934 27 H 0.057 0.943 28 H 0.093 0.907 29 H 0.101 0.899 30 H 0.065 0.935 31 H 0.109 0.891 32 H 0.090 0.910 33 H 0.157 0.843 34 H 0.151 0.849 35 H 0.152 0.848 36 H 0.157 0.843 37 H 0.216 0.784 38 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 8.870 -0.750 11.907 14.867 hybrid contribution 0.066 0.322 -1.266 1.308 sum 8.936 -0.428 10.641 13.902 Atomic orbital electron populations 1.22358 0.98652 1.00849 1.00330 1.20673 0.92085 0.96306 0.86697 0.93100 1.21903 0.78346 1.01415 0.99674 1.47487 1.06754 1.21030 1.56333 1.22030 1.00320 0.86792 0.97141 1.17999 0.85838 0.82227 0.79166 1.90768 1.74433 1.33839 1.42478 1.20047 0.94630 0.94617 1.06473 1.21317 0.94473 0.95937 0.96288 1.21117 0.93884 0.99099 1.01629 1.21127 1.00285 0.91872 0.96052 1.21113 0.91973 1.00489 1.04547 1.17675 0.90053 0.81783 0.97461 1.91572 1.81133 1.47135 1.90247 1.42435 1.78202 1.10368 1.05237 1.19191 1.35901 0.93794 0.87269 0.91471 1.24645 1.02414 0.95983 0.97833 1.69610 1.51523 1.08519 1.28900 0.86315 0.77805 0.78658 0.83742 1.21403 1.21741 1.21366 0.92526 0.93435 0.94266 0.90681 0.89923 0.93487 0.89061 0.90976 0.84328 0.84859 0.84797 0.84282 0.78394 0.93613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.98 9.49 37.16 0.35 -2.63 16 2 C 0.15 3.19 3.20 -67.93 -0.22 2.97 16 3 H 0.05 1.20 8.08 -51.93 -0.42 0.78 16 4 C 0.11 1.92 5.06 -4.04 -0.02 1.90 16 5 N -0.59 -10.37 2.73 -182.75 -0.50 -10.87 16 6 C 0.08 1.26 8.59 59.85 0.51 1.77 16 7 C 0.56 10.66 7.02 -12.40 -0.09 10.58 16 8 O -0.54 -11.78 16.18 5.30 0.09 -11.69 16 9 C -0.15 -2.50 4.92 -104.91 -0.52 -3.02 16 10 C -0.06 -0.76 7.77 -39.19 -0.30 -1.06 16 11 C -0.14 -1.39 10.03 -39.64 -0.40 -1.78 16 12 C -0.08 -0.75 10.03 -39.51 -0.40 -1.14 16 13 C -0.16 -2.01 10.01 -39.56 -0.40 -2.41 16 14 C 0.15 2.47 7.26 -38.96 -0.28 2.19 16 15 F -0.12 -2.34 16.49 2.25 0.04 -2.31 16 16 N -0.72 -17.59 4.57 -53.43 -0.24 -17.83 16 17 C -0.23 -6.40 9.93 -15.07 -0.15 -6.55 16 18 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 19 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 20 N -0.94 -27.20 13.06 55.49 0.72 -26.48 16 21 Si 0.90 22.62 29.55 -169.99 -5.02 17.59 16 22 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 23 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 25 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 26 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 27 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.07 1.16 8.07 -51.93 -0.42 0.74 16 29 H 0.08 1.41 7.36 -51.93 -0.38 1.03 16 30 H 0.05 0.56 7.03 -51.93 -0.37 0.19 16 31 H 0.09 1.63 5.76 -51.93 -0.30 1.33 16 32 H 0.07 1.19 6.27 -51.93 -0.33 0.86 16 33 H 0.14 1.43 6.23 -52.49 -0.33 1.11 16 34 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 35 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 36 H 0.14 1.41 8.06 -52.49 -0.42 0.99 16 37 H 0.38 9.45 5.40 -40.82 -0.22 9.23 16 38 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 321.66 15.07 4.85 4.85 Total: -1.00 -32.98 321.66 -6.91 -39.89 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -4.84 Total: 6.51 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: -2.00 Total: 0.34 kcal Atomic # 7 Polarization: -55.16 SS G_CDS: -0.02 Total: -55.18 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: 0.09 Total: -11.69 kcal Atomic # 9 Polarization: -2.34 SS G_CDS: 0.04 Total: -2.31 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.98 -6.91 -39.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571374879.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.895 kcal (2) G-P(sol) polarization free energy of solvation -32.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds