Wall clock time and date at job start Tue Mar 31 2020 02:23:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.47072 * 2 1 4 4 C 1.50697 * 109.47096 * 119.99588 * 2 1 3 5 5 H 1.07996 * 120.00460 * 120.00186 * 4 2 1 6 6 C 1.37885 * 119.99896 * 300.00221 * 4 2 1 7 7 N 1.31512 * 119.99774 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99771 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47284 * 59.99969 * 8 6 4 10 10 H 1.48504 * 109.46995 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47367 * 299.99965 * 8 6 4 12 12 N 1.46894 * 109.47572 * 239.99963 * 2 1 3 13 13 C 1.46897 * 111.00567 * 84.99601 * 12 2 1 14 14 C 1.50693 * 109.47505 * 180.02562 * 13 12 2 15 15 C 1.33637 * 126.03703 * 89.96083 * 14 13 12 16 16 N 1.31789 * 114.50004 * 180.02562 * 15 14 13 17 17 C 1.29022 * 117.12256 * 359.97438 * 16 15 14 18 18 C 1.50701 * 124.91373 * 180.26689 * 17 16 15 19 19 C 1.54265 * 110.03555 * 56.86265 * 18 17 16 20 20 C 1.54883 * 104.19744 * 217.10714 * 19 18 17 21 21 C 1.54890 * 102.74851 * 37.94183 * 20 19 18 22 22 C 1.53882 * 110.03288 * 299.69597 * 18 17 16 23 23 S 1.70978 * 110.16886 * 0.02562 * 17 16 15 24 24 H 1.09000 * 109.47571 * 300.00447 * 1 2 3 25 25 H 1.09004 * 109.47151 * 60.00402 * 1 2 3 26 26 H 1.09001 * 109.47022 * 180.02562 * 1 2 3 27 27 H 0.97007 * 119.99441 * 180.02562 * 7 6 4 28 28 H 1.00913 * 110.99550 * 321.04558 * 12 2 1 29 29 H 1.09002 * 109.47062 * 60.00089 * 13 12 2 30 30 H 1.09005 * 109.47124 * 300.00644 * 13 12 2 31 31 H 1.08002 * 122.75102 * 0.02562 * 15 14 13 32 32 H 1.08998 * 110.01688 * 178.31104 * 18 17 16 33 33 H 1.09001 * 110.48306 * 335.78370 * 19 18 17 34 34 H 1.09004 * 110.48742 * 98.42604 * 19 18 17 35 35 H 1.09001 * 110.75623 * 279.62628 * 20 19 18 36 36 H 1.09003 * 110.91530 * 156.32793 * 20 19 18 37 37 H 1.09005 * 110.48585 * 203.38021 * 21 20 19 38 38 H 1.09001 * 110.60132 * 80.79741 * 21 20 19 39 39 H 1.09000 * 110.03511 * 238.57149 * 22 18 17 40 40 H 1.08999 * 110.02893 * 0.02562 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1316 6 6 1.6991 -0.2391 2.4828 7 7 0.9426 0.8298 2.6033 8 14 2.3212 -1.1200 4.0080 9 1 3.8062 -1.1206 4.0083 10 1 1.8268 -0.4195 5.2205 11 1 1.8257 -2.5199 4.0079 12 7 2.0197 -0.6925 -1.1993 13 6 2.0825 0.2225 -2.3469 14 6 2.5875 -0.5219 -3.5559 15 6 1.8359 -1.1716 -4.4497 16 7 2.5162 -1.7462 -5.4212 17 6 3.7997 -1.6168 -5.3969 18 6 4.7443 -2.1943 -6.4193 19 6 4.3712 -1.6894 -7.8284 20 6 4.6322 -2.9068 -8.7496 21 6 4.1635 -4.1000 -7.8804 22 6 4.6124 -3.7271 -6.4524 23 16 4.2731 -0.6897 -4.0406 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 0.7085 1.1615 3.4844 28 1 1.4496 -1.4980 -1.4099 29 1 2.7589 1.0461 -2.1183 30 1 1.0871 0.6162 -2.5526 31 1 0.7592 -1.2218 -4.3815 32 1 5.7699 -1.9131 -6.1805 33 1 3.3203 -1.4020 -7.8646 34 1 5.0070 -0.8514 -8.1141 35 1 5.6932 -2.9931 -8.9843 36 1 4.0405 -2.8379 -9.6625 37 1 4.6478 -5.0213 -8.2041 38 1 3.0794 -4.2042 -7.9246 39 1 5.5741 -4.1896 -6.2305 40 1 3.8647 -4.0532 -5.7293 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001656872422.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:23:34 Heat of formation + Delta-G solvation = 23.478245 kcal Electronic energy + Delta-G solvation = -19052.735758 eV Core-core repulsion = 16186.150991 eV Total energy + Delta-G solvation = -2866.584767 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.130 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.84304 -37.87459 -36.12828 -32.98743 -31.26308 -29.57523 -28.86668 -27.33665 -25.22337 -24.85577 -23.14792 -21.07054 -20.78390 -20.25211 -18.41661 -18.07783 -16.36294 -15.99377 -15.40000 -14.87310 -14.73766 -14.44677 -14.19409 -13.56792 -13.41040 -13.31158 -13.07032 -12.41377 -11.89854 -11.74804 -11.57454 -11.45930 -11.27686 -11.25021 -11.11293 -10.92645 -10.87938 -10.76435 -10.71184 -10.55140 -10.18205 -9.98100 -9.36854 -9.10216 -8.97430 -8.56802 -8.38587 -7.33675 -6.01123 -4.04668 0.91765 1.55217 2.01248 3.00673 3.33612 3.37323 3.41043 4.08711 4.42491 4.45688 4.50425 4.71731 5.10171 5.16698 5.27608 5.30524 5.33090 5.38654 5.41720 5.49227 5.51218 5.61481 5.70335 5.73696 5.89890 6.00875 6.02528 6.12331 6.17213 6.19242 6.40612 6.63719 6.79167 7.02844 7.27335 7.69548 7.83683 7.92308 8.20920 8.44704 8.54237 9.02016 9.60699 11.05863 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.034648 B = 0.003220 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.927830 B = 8692.285859 C = 8990.030195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.212 3.788 3 H 0.035 0.965 4 C -0.497 4.497 5 H 0.062 0.938 6 C 0.056 3.944 7 N -0.898 5.898 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.289 1.289 11 H -0.278 1.278 12 N -0.678 5.678 13 C 0.130 3.870 14 C -0.190 4.190 15 C 0.023 3.977 16 N -0.467 5.467 17 C 0.033 3.967 18 C -0.012 4.012 19 C -0.111 4.111 20 C -0.123 4.123 21 C -0.121 4.121 22 C -0.111 4.111 23 S 0.133 5.867 24 H 0.090 0.910 25 H 0.005 0.995 26 H 0.029 0.971 27 H 0.261 0.739 28 H 0.328 0.672 29 H 0.077 0.923 30 H 0.043 0.957 31 H 0.170 0.830 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.595 -4.664 -20.092 21.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.105 3.895 3 H 0.053 0.947 4 C -0.536 4.536 5 H 0.080 0.920 6 C -0.145 4.145 7 N -0.537 5.537 8 Si 0.727 3.273 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.203 1.203 12 N -0.308 5.308 13 C -0.001 4.001 14 C -0.311 4.311 15 C -0.129 4.129 16 N -0.181 5.181 17 C -0.245 4.245 18 C -0.034 4.034 19 C -0.150 4.150 20 C -0.161 4.161 21 C -0.158 4.158 22 C -0.150 4.150 23 S 0.390 5.610 24 H 0.109 0.891 25 H 0.024 0.976 26 H 0.048 0.952 27 H 0.070 0.930 28 H 0.145 0.855 29 H 0.096 0.904 30 H 0.061 0.939 31 H 0.187 0.813 32 H 0.106 0.894 33 H 0.096 0.904 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 7.902 -4.396 -19.772 21.742 hybrid contribution -1.743 -0.322 0.900 1.988 sum 6.159 -4.718 -18.872 20.405 Atomic orbital electron populations 1.22446 1.00546 0.99342 1.00603 1.19201 0.89715 0.94453 0.86162 0.94748 1.21100 1.30408 1.12542 0.89505 0.91951 1.24947 0.95282 0.95197 0.99051 1.69871 1.37171 1.23166 1.23533 0.86546 0.79208 0.79611 0.81937 1.20248 1.21429 1.20339 1.60917 1.58482 1.08812 1.02633 1.20306 0.98698 0.94481 0.86634 1.26134 0.94792 1.07043 1.03177 1.21621 1.01274 0.98642 0.91334 1.66112 1.05469 1.21092 1.25439 1.26851 0.94284 1.03025 1.00323 1.20428 0.95455 0.95614 0.91909 1.22427 1.02582 0.97727 0.92275 1.22480 1.00961 0.94717 0.97907 1.22324 1.01353 0.97749 0.94417 1.22162 1.01744 0.93063 0.98009 1.84012 1.08703 1.48230 1.20094 0.89112 0.97567 0.95226 0.92957 0.85490 0.90439 0.93878 0.81321 0.89384 0.90395 0.91517 0.91529 0.91487 0.91799 0.91287 0.91414 0.91022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.02 8.94 37.16 0.33 -3.69 16 2 C 0.21 5.26 2.57 -68.87 -0.18 5.08 16 3 H 0.03 0.93 7.80 -51.93 -0.40 0.53 16 4 C -0.50 -13.71 8.84 -34.44 -0.30 -14.02 16 5 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 6 C 0.06 1.54 5.30 -17.82 -0.09 1.45 16 7 N -0.90 -25.53 11.32 55.43 0.63 -24.91 16 8 Si 0.90 21.50 29.54 -169.99 -5.02 16.47 16 9 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 N -0.68 -14.30 6.22 -109.23 -0.68 -14.98 16 13 C 0.13 2.31 6.01 -4.98 -0.03 2.28 16 14 C -0.19 -3.01 6.11 -35.92 -0.22 -3.23 16 15 C 0.02 0.34 11.25 -19.18 -0.22 0.12 16 16 N -0.47 -6.93 10.20 -11.86 -0.12 -7.05 16 17 C 0.03 0.44 5.66 -13.46 -0.08 0.36 16 18 C -0.01 -0.12 3.40 -90.65 -0.31 -0.43 16 19 C -0.11 -1.02 6.35 -25.08 -0.16 -1.18 16 20 C -0.12 -0.95 6.91 -24.74 -0.17 -1.12 16 21 C -0.12 -1.03 6.83 -25.08 -0.17 -1.20 16 22 C -0.11 -1.08 6.45 -25.61 -0.17 -1.25 16 23 S 0.13 1.89 23.18 -107.50 -2.49 -0.60 16 24 H 0.09 2.39 6.07 -51.93 -0.32 2.07 16 25 H 0.01 0.11 7.45 -51.93 -0.39 -0.27 16 26 H 0.03 0.67 8.13 -51.93 -0.42 0.25 16 27 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 28 H 0.33 6.70 8.46 -39.29 -0.33 6.36 16 29 H 0.08 1.40 8.06 -51.93 -0.42 0.98 16 30 H 0.04 0.74 7.44 -51.93 -0.39 0.35 16 31 H 0.17 2.30 8.06 -52.49 -0.42 1.88 16 32 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.08 0.85 7.60 -51.93 -0.39 0.46 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.07 0.85 7.64 -51.93 -0.40 0.45 16 LS Contribution 336.21 15.07 5.07 5.07 Total: -1.00 -28.72 336.21 -10.76 -39.49 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -6.38 Total: 3.33 kcal Atomic # 6 Polarization: -15.06 SS G_CDS: -1.76 Total: -16.82 kcal Atomic # 7 Polarization: -46.76 SS G_CDS: -0.17 Total: -46.94 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: 1.89 SS G_CDS: -2.49 Total: -0.60 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -28.72 -10.76 -39.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656872422.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.966 kcal (2) G-P(sol) polarization free energy of solvation -28.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds