Wall clock time and date at job start Tue Mar 31 2020 02:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.47072 * 2 1 4 4 C 1.50697 * 109.47096 * 119.99588 * 2 1 3 5 5 H 1.07996 * 120.00460 * 120.00186 * 4 2 1 6 6 C 1.37885 * 119.99896 * 300.00221 * 4 2 1 7 7 N 1.31512 * 119.99774 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99771 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47284 * 59.99969 * 8 6 4 10 10 H 1.48504 * 109.46995 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47367 * 299.99965 * 8 6 4 12 12 N 1.46894 * 109.47572 * 239.99963 * 2 1 3 13 13 C 1.46897 * 111.00567 * 84.99601 * 12 2 1 14 14 C 1.50693 * 109.47505 * 180.02562 * 13 12 2 15 15 C 1.33637 * 126.03703 * 89.96083 * 14 13 12 16 16 N 1.31789 * 114.50004 * 180.02562 * 15 14 13 17 17 C 1.29022 * 117.12256 * 359.97438 * 16 15 14 18 18 C 1.50701 * 124.91373 * 180.26689 * 17 16 15 19 19 C 1.54265 * 110.03555 * 56.86265 * 18 17 16 20 20 C 1.54883 * 104.19744 * 217.10714 * 19 18 17 21 21 C 1.54890 * 102.74851 * 37.94183 * 20 19 18 22 22 C 1.53882 * 110.03288 * 299.69597 * 18 17 16 23 23 S 1.70978 * 110.16886 * 0.02562 * 17 16 15 24 24 H 1.09000 * 109.47571 * 300.00447 * 1 2 3 25 25 H 1.09004 * 109.47151 * 60.00402 * 1 2 3 26 26 H 1.09001 * 109.47022 * 180.02562 * 1 2 3 27 27 H 0.97007 * 119.99441 * 180.02562 * 7 6 4 28 28 H 1.00913 * 110.99550 * 321.04558 * 12 2 1 29 29 H 1.09002 * 109.47062 * 60.00089 * 13 12 2 30 30 H 1.09005 * 109.47124 * 300.00644 * 13 12 2 31 31 H 1.08002 * 122.75102 * 0.02562 * 15 14 13 32 32 H 1.08998 * 110.01688 * 178.31104 * 18 17 16 33 33 H 1.09001 * 110.48306 * 335.78370 * 19 18 17 34 34 H 1.09004 * 110.48742 * 98.42604 * 19 18 17 35 35 H 1.09001 * 110.75623 * 279.62628 * 20 19 18 36 36 H 1.09003 * 110.91530 * 156.32793 * 20 19 18 37 37 H 1.09005 * 110.48585 * 203.38021 * 21 20 19 38 38 H 1.09001 * 110.60132 * 80.79741 * 21 20 19 39 39 H 1.09000 * 110.03511 * 238.57149 * 22 18 17 40 40 H 1.08999 * 110.02893 * 0.02562 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1316 6 6 1.6991 -0.2391 2.4828 7 7 0.9426 0.8298 2.6033 8 14 2.3212 -1.1200 4.0080 9 1 3.8062 -1.1206 4.0083 10 1 1.8268 -0.4195 5.2205 11 1 1.8257 -2.5199 4.0079 12 7 2.0197 -0.6925 -1.1993 13 6 2.0825 0.2225 -2.3469 14 6 2.5875 -0.5219 -3.5559 15 6 1.8359 -1.1716 -4.4497 16 7 2.5162 -1.7462 -5.4212 17 6 3.7997 -1.6168 -5.3969 18 6 4.7443 -2.1943 -6.4193 19 6 4.3712 -1.6894 -7.8284 20 6 4.6322 -2.9068 -8.7496 21 6 4.1635 -4.1000 -7.8804 22 6 4.6124 -3.7271 -6.4524 23 16 4.2731 -0.6897 -4.0406 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 0.7085 1.1615 3.4844 28 1 1.4496 -1.4980 -1.4099 29 1 2.7589 1.0461 -2.1183 30 1 1.0871 0.6162 -2.5526 31 1 0.7592 -1.2218 -4.3815 32 1 5.7699 -1.9131 -6.1805 33 1 3.3203 -1.4020 -7.8646 34 1 5.0070 -0.8514 -8.1141 35 1 5.6932 -2.9931 -8.9843 36 1 4.0405 -2.8379 -9.6625 37 1 4.6478 -5.0213 -8.2041 38 1 3.0794 -4.2042 -7.9246 39 1 5.5741 -4.1896 -6.2305 40 1 3.8647 -4.0532 -5.7293 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001656872422.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:23:33 Heat of formation + Delta-G solvation = 7.045135 kcal Electronic energy + Delta-G solvation = -19053.448351 eV Core-core repulsion = 16186.150991 eV Total energy + Delta-G solvation = -2867.297360 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.130 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.92553 -38.76635 -37.81461 -34.83015 -32.67725 -30.84619 -29.57777 -28.78338 -27.25465 -26.10310 -24.45976 -22.25628 -21.94226 -21.47160 -19.55079 -19.16059 -18.31574 -16.89924 -16.81073 -16.34330 -16.09468 -15.61461 -15.55675 -14.99885 -14.74751 -14.29486 -14.15144 -13.91982 -13.60110 -13.45928 -12.87154 -12.82075 -12.61976 -12.39287 -12.31562 -12.19978 -12.09120 -11.97330 -11.91842 -11.88292 -11.59859 -11.40463 -11.10552 -10.50301 -10.48842 -10.17908 -9.73571 -9.04620 -8.11221 -6.22556 -0.23680 0.41648 0.86095 1.43074 1.44427 1.52301 1.85062 2.43411 3.12242 3.17205 3.63992 3.73712 3.78857 3.85089 4.01496 4.21781 4.37144 4.53225 4.57349 4.59383 4.61875 4.69120 4.71335 4.82709 4.85520 4.89505 4.99687 5.05901 5.10465 5.19362 5.30208 5.30977 5.36876 5.41230 5.54018 5.67549 5.78249 6.23446 6.57491 6.71421 6.78994 6.90414 7.47217 8.93969 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.034648 B = 0.003220 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.927830 B = 8692.285859 C = 8990.030195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.218 3.782 3 H 0.006 0.994 4 C -0.518 4.518 5 H 0.053 0.947 6 C 0.011 3.989 7 N -0.921 5.921 8 Si 0.960 3.040 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.272 1.272 12 N -0.682 5.682 13 C 0.139 3.861 14 C -0.217 4.217 15 C 0.029 3.971 16 N -0.487 5.487 17 C 0.049 3.951 18 C -0.018 4.018 19 C -0.110 4.110 20 C -0.116 4.116 21 C -0.120 4.120 22 C -0.110 4.110 23 S 0.138 5.862 24 H 0.063 0.937 25 H 0.028 0.972 26 H 0.031 0.969 27 H 0.262 0.738 28 H 0.333 0.667 29 H 0.068 0.932 30 H 0.050 0.950 31 H 0.180 0.820 32 H 0.107 0.893 33 H 0.057 0.943 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.054 0.946 39 H 0.085 0.915 40 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.747 -5.684 -21.439 23.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.109 3.891 3 H 0.024 0.976 4 C -0.557 4.557 5 H 0.071 0.929 6 C -0.188 4.188 7 N -0.561 5.561 8 Si 0.786 3.214 9 H -0.199 1.199 10 H -0.209 1.209 11 H -0.197 1.197 12 N -0.313 5.313 13 C 0.008 3.992 14 C -0.338 4.338 15 C -0.122 4.122 16 N -0.201 5.201 17 C -0.229 4.229 18 C -0.040 4.040 19 C -0.149 4.149 20 C -0.154 4.154 21 C -0.158 4.158 22 C -0.150 4.150 23 S 0.395 5.605 24 H 0.082 0.918 25 H 0.047 0.953 26 H 0.051 0.949 27 H 0.071 0.929 28 H 0.150 0.850 29 H 0.087 0.913 30 H 0.068 0.932 31 H 0.197 0.803 32 H 0.125 0.875 33 H 0.075 0.925 34 H 0.099 0.901 35 H 0.103 0.897 36 H 0.092 0.908 37 H 0.098 0.902 38 H 0.073 0.927 39 H 0.104 0.896 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 9.058 -5.414 -21.132 23.621 hybrid contribution -2.066 -0.023 1.214 2.396 sum 6.993 -5.438 -19.918 21.798 Atomic orbital electron populations 1.22252 0.99730 0.99361 1.00352 1.18946 0.90220 0.92833 0.87067 0.97579 1.21404 1.30650 1.12572 0.91071 0.92869 1.25695 0.95406 0.95862 1.01817 1.69994 1.37839 1.24167 1.24133 0.85584 0.78670 0.78672 0.78517 1.19908 1.20880 1.19730 1.60752 1.58273 1.09334 1.02912 1.20145 0.99031 0.93834 0.86183 1.25875 0.95989 1.08742 1.03211 1.21844 1.01938 0.97588 0.90872 1.66196 1.06174 1.21988 1.25697 1.27481 0.94315 1.01186 0.99925 1.20722 0.95641 0.95969 0.91691 1.22421 1.01594 0.99016 0.91857 1.22476 1.02196 0.93157 0.97542 1.22323 1.00636 0.98988 0.93818 1.22175 1.01953 0.92578 0.98249 1.83946 1.07659 1.48431 1.20462 0.91802 0.95263 0.94940 0.92914 0.85017 0.91312 0.93217 0.80270 0.87463 0.92452 0.90062 0.89712 0.90778 0.90154 0.92743 0.89645 0.93486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.48 8.94 71.98 0.64 -6.84 16 2 C 0.22 10.95 2.57 44.17 0.11 11.07 16 3 H 0.01 0.35 7.80 -2.38 -0.02 0.33 16 4 C -0.52 -28.94 8.84 25.60 0.23 -28.71 16 5 H 0.05 3.00 7.81 -2.91 -0.02 2.97 16 6 C 0.01 0.59 5.30 84.66 0.45 1.04 16 7 N -0.92 -52.97 11.32 21.45 0.24 -52.73 16 8 Si 0.96 44.09 29.54 68.60 2.03 46.11 16 9 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 10 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 11 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 12 N -0.68 -28.93 6.22 -499.49 -3.11 -32.04 16 13 C 0.14 4.95 6.01 85.56 0.51 5.47 16 14 C -0.22 -6.79 6.11 24.64 0.15 -6.64 16 15 C 0.03 0.86 11.25 83.65 0.94 1.81 16 16 N -0.49 -14.07 10.20 -191.44 -1.95 -16.02 16 17 C 0.05 1.24 5.66 88.52 0.50 1.74 16 18 C -0.02 -0.34 3.40 -10.81 -0.04 -0.37 16 19 C -0.11 -1.78 6.35 31.67 0.20 -1.58 16 20 C -0.12 -1.46 6.91 31.88 0.22 -1.24 16 21 C -0.12 -1.79 6.83 31.67 0.22 -1.57 16 22 C -0.11 -1.95 6.45 31.32 0.20 -1.75 16 23 S 0.14 3.79 23.18 -56.49 -1.31 2.48 16 24 H 0.06 3.40 6.07 -2.39 -0.01 3.38 16 25 H 0.03 1.20 7.45 -2.39 -0.02 1.19 16 26 H 0.03 1.47 8.13 -2.39 -0.02 1.45 16 27 H 0.26 14.35 8.31 -92.70 -0.77 13.58 16 28 H 0.33 13.53 8.46 -89.68 -0.76 12.77 16 29 H 0.07 2.53 8.06 -2.39 -0.02 2.51 16 30 H 0.05 1.69 7.44 -2.38 -0.02 1.67 16 31 H 0.18 4.74 8.06 -2.91 -0.02 4.72 16 32 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.06 1.18 7.60 -2.39 -0.02 1.17 16 34 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 38 H 0.05 0.96 8.14 -2.39 -0.02 0.95 16 39 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.05 1.07 7.64 -2.39 -0.02 1.05 16 Total: -1.00 -61.26 336.21 0.51 -60.75 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: 0.27 Total: 19.03 kcal Atomic # 6 Polarization: -31.93 SS G_CDS: 4.34 Total: -27.59 kcal Atomic # 7 Polarization: -95.97 SS G_CDS: -4.82 Total: -100.79 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.11 kcal Atomic # 16 Polarization: 3.79 SS G_CDS: -1.31 Total: 2.48 kcal Total: -61.26 0.51 -60.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656872422.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.796 kcal (2) G-P(sol) polarization free energy of solvation -61.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds