Wall clock time and date at job start Tue Mar 31 2020 02:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47375 * 2 1 4 4 C 1.53006 * 109.47164 * 239.99966 * 2 1 3 5 5 N 1.46496 * 109.47070 * 185.00131 * 4 2 1 6 6 C 1.34775 * 119.99828 * 180.02562 * 5 4 2 7 7 O 1.21283 * 120.00204 * 359.97438 * 6 5 4 8 8 C 1.50702 * 120.00297 * 180.02562 * 6 5 4 9 9 H 1.09003 * 109.46608 * 344.99552 * 8 6 5 10 10 F 1.39889 * 109.47623 * 104.99372 * 8 6 5 11 11 C 1.50699 * 109.46940 * 224.99916 * 8 6 5 12 12 C 1.38232 * 120.00072 * 294.71938 * 11 8 6 13 13 C 1.38228 * 120.00099 * 179.79240 * 12 11 8 14 14 C 1.38234 * 120.00271 * 0.43812 * 13 12 11 15 15 C 1.38239 * 119.99578 * 359.81502 * 14 13 12 16 16 C 1.38231 * 120.00149 * 359.97438 * 15 14 13 17 17 N 1.46504 * 109.47417 * 120.00052 * 2 1 3 18 18 C 1.36937 * 119.99777 * 275.00036 * 17 2 1 19 19 H 1.08003 * 119.99797 * 359.97438 * 18 17 2 20 20 C 1.38806 * 120.00162 * 179.97438 * 18 17 2 21 21 N 1.31617 * 120.00325 * 179.97438 * 20 18 17 22 22 Si 1.86804 * 119.99825 * 0.02562 * 20 18 17 23 23 H 1.48505 * 109.47263 * 89.99889 * 22 20 18 24 24 H 1.48502 * 109.47263 * 209.99728 * 22 20 18 25 25 H 1.48499 * 109.47274 * 329.99944 * 22 20 18 26 26 H 1.09000 * 109.47140 * 59.99983 * 1 2 3 27 27 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46777 * 300.00555 * 1 2 3 29 29 H 1.09004 * 109.46579 * 304.99685 * 4 2 1 30 30 H 1.08992 * 109.47046 * 64.99868 * 4 2 1 31 31 H 0.97001 * 120.00404 * 359.97438 * 5 4 2 32 32 H 1.08005 * 119.99840 * 359.97438 * 12 11 8 33 33 H 1.08006 * 120.00437 * 180.27886 * 13 12 11 34 34 H 1.07999 * 120.00815 * 179.83580 * 14 13 12 35 35 H 1.08001 * 119.99972 * 179.97438 * 15 14 13 36 36 H 1.08002 * 120.00106 * 179.97438 * 16 15 14 37 37 H 0.96990 * 120.00057 * 94.99539 * 17 2 1 38 38 H 0.97001 * 120.00067 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 3.5000 -0.8264 -1.1906 6 6 4.1730 -1.4283 -2.1912 7 8 3.5699 -1.8833 -3.1400 8 6 5.6749 -1.5371 -2.1306 9 1 6.0577 -0.8592 -1.3676 10 9 6.0349 -2.8504 -1.8106 11 6 6.2596 -1.1679 -3.4696 12 6 6.0047 -1.9562 -4.5761 13 6 6.5375 -1.6153 -5.8052 14 6 7.3327 -0.4910 -5.9260 15 6 7.5919 0.2945 -4.8183 16 6 7.0555 -0.0441 -3.5901 17 7 2.0184 -0.6906 1.1962 18 6 2.1492 -0.0075 2.3757 19 1 1.8927 1.0406 2.4241 20 6 2.6114 -0.6618 3.5092 21 7 2.7376 -0.0051 4.6428 22 14 3.0558 -2.4743 3.4254 23 1 4.4886 -2.6165 3.0620 24 1 2.8158 -3.1046 4.7484 25 1 2.2162 -3.1429 2.3990 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.6054 -1.7199 -1.2951 30 1 1.7516 -0.1584 -2.1369 31 1 3.9824 -0.4622 -0.4319 32 1 5.3868 -2.8369 -4.4810 33 1 6.3347 -2.2287 -6.6707 34 1 7.7512 -0.2260 -6.8857 35 1 8.2135 1.1726 -4.9125 36 1 7.2584 0.5693 -2.7247 37 1 2.2490 -1.6317 1.1526 38 1 3.0610 -0.4624 5.4349 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001662351509.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:32:37 Heat of formation + Delta-G solvation = -68.681307 kcal Electronic energy + Delta-G solvation = -21502.420750 eV Core-core repulsion = 18065.626468 eV Total energy + Delta-G solvation = -3436.794281 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -49.08220 -40.96414 -39.82356 -38.09086 -35.34905 -33.90652 -33.32742 -31.84336 -31.25761 -28.92605 -26.67533 -25.29679 -23.60825 -22.94202 -21.88762 -21.43133 -19.88861 -18.66102 -18.28415 -17.85517 -17.07861 -16.88620 -16.54695 -16.07372 -15.92460 -15.51776 -15.31542 -15.01230 -14.75235 -14.46336 -14.33417 -13.83298 -13.77464 -13.61775 -13.46532 -13.29747 -13.09680 -12.87027 -12.50428 -12.14868 -12.08476 -11.94484 -11.80644 -11.72761 -11.06929 -10.95491 -10.21471 -9.87536 -9.85725 -9.36022 -8.01214 -5.34941 0.21503 0.45783 1.27820 1.38899 1.40368 1.46466 1.91976 2.47630 2.79271 3.24535 3.30564 3.40458 3.57383 3.58090 3.87934 3.96721 4.12509 4.19602 4.26499 4.30640 4.56185 4.57421 4.66871 4.68432 4.78049 4.94251 4.99740 5.10815 5.21506 5.25692 5.47370 5.51781 5.54020 5.56020 5.80460 6.02236 6.22169 6.32960 6.94827 7.07913 7.82631 8.00650 9.19920 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.021668 B = 0.004280 C = 0.003994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.912778 B = 6540.026580 C = 7008.047227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.163 3.837 3 H 0.066 0.934 4 C 0.119 3.881 5 N -0.703 5.703 6 C 0.492 3.508 7 O -0.555 6.555 8 C 0.125 3.875 9 H 0.137 0.863 10 F -0.197 7.197 11 C -0.144 4.144 12 C -0.094 4.094 13 C -0.135 4.135 14 C -0.107 4.107 15 C -0.128 4.128 16 C -0.101 4.101 17 N -0.750 5.750 18 C -0.222 4.222 19 H 0.066 0.934 20 C -0.054 4.054 21 N -0.980 5.980 22 Si 0.941 3.059 23 H -0.275 1.275 24 H -0.301 1.301 25 H -0.262 1.262 26 H 0.077 0.923 27 H 0.049 0.951 28 H 0.042 0.958 29 H 0.061 0.939 30 H 0.089 0.911 31 H 0.415 0.585 32 H 0.110 0.890 33 H 0.140 0.860 34 H 0.153 0.847 35 H 0.155 0.845 36 H 0.149 0.851 37 H 0.363 0.637 38 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.814 0.220 -21.018 22.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.056 3.944 3 H 0.084 0.916 4 C -0.005 4.005 5 N -0.355 5.355 6 C 0.276 3.724 7 O -0.433 6.433 8 C 0.086 3.914 9 H 0.155 0.845 10 F -0.178 7.178 11 C -0.145 4.145 12 C -0.112 4.112 13 C -0.153 4.153 14 C -0.124 4.124 15 C -0.146 4.146 16 C -0.119 4.119 17 N -0.394 5.394 18 C -0.353 4.353 19 H 0.084 0.916 20 C -0.246 4.246 21 N -0.631 5.631 22 Si 0.770 3.230 23 H -0.201 1.201 24 H -0.228 1.228 25 H -0.187 1.187 26 H 0.096 0.904 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.079 0.921 30 H 0.107 0.893 31 H 0.252 0.748 32 H 0.128 0.872 33 H 0.158 0.842 34 H 0.170 0.830 35 H 0.173 0.827 36 H 0.167 0.833 37 H 0.196 0.804 38 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 8.361 0.049 -21.531 23.097 hybrid contribution 0.148 -1.238 1.161 1.704 sum 8.508 -1.188 -20.370 22.107 Atomic orbital electron populations 1.22225 0.96286 1.01610 1.01610 1.20670 0.93818 0.95919 0.84039 0.91639 1.21723 0.79010 1.01112 0.98678 1.46076 1.08659 1.57886 1.22889 1.21057 0.90286 0.78432 0.82615 1.90673 1.70396 1.48136 1.34084 1.20458 0.91207 0.81476 0.98305 0.84520 1.92877 1.92345 1.38569 1.94014 1.19824 1.02123 0.99067 0.93509 1.21121 0.97703 0.99215 0.93206 1.21426 0.98233 0.98513 0.97141 1.21644 0.96719 0.93953 1.00127 1.21513 1.00241 1.00812 0.91993 1.21340 0.95511 0.95201 0.99836 1.42863 1.79979 1.09474 1.07088 1.18995 1.34761 0.94529 0.87033 0.91648 1.25312 1.02592 1.01338 0.95329 1.69850 1.54669 1.37413 1.01138 0.85632 0.78773 0.81998 0.76626 1.20125 1.22830 1.18746 0.90446 0.93232 0.93885 0.92110 0.89250 0.74786 0.87224 0.84180 0.82956 0.82728 0.83348 0.80410 0.93433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.77 9.49 71.98 0.68 -4.09 16 2 C 0.16 5.38 3.05 44.99 0.14 5.52 16 3 H 0.07 2.17 8.08 -2.39 -0.02 2.15 16 4 C 0.12 3.44 5.23 86.38 0.45 3.89 16 5 N -0.70 -20.26 5.39 -463.06 -2.49 -22.75 16 6 C 0.49 14.84 7.16 87.66 0.63 15.46 16 7 O -0.55 -19.78 15.22 -3.04 -0.05 -19.82 16 8 C 0.12 3.20 4.01 29.10 0.12 3.32 16 9 H 0.14 2.64 7.74 -2.39 -0.02 2.62 16 10 F -0.20 -5.97 16.91 44.97 0.76 -5.20 16 11 C -0.14 -3.49 5.00 -19.87 -0.10 -3.59 16 12 C -0.09 -2.39 8.56 22.27 0.19 -2.20 16 13 C -0.14 -2.65 10.05 22.27 0.22 -2.43 16 14 C -0.11 -1.66 10.05 22.27 0.22 -1.43 16 15 C -0.13 -1.96 10.05 22.27 0.22 -1.74 16 16 C -0.10 -1.87 9.67 22.27 0.22 -1.66 16 17 N -0.75 -31.50 4.37 -322.93 -1.41 -32.91 16 18 C -0.22 -11.62 10.41 84.03 0.87 -10.75 16 19 H 0.07 3.73 8.06 -2.91 -0.02 3.71 16 20 C -0.05 -3.00 5.50 84.86 0.47 -2.54 16 21 N -0.98 -60.30 13.97 21.65 0.30 -60.00 16 22 Si 0.94 44.19 27.74 68.60 1.90 46.10 16 23 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 24 H -0.30 -14.63 7.11 99.48 0.71 -13.93 16 25 H -0.26 -11.50 6.52 99.48 0.65 -10.85 16 26 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.06 1.86 8.14 -2.39 -0.02 1.85 16 30 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 31 H 0.41 11.61 8.03 -92.71 -0.74 10.87 16 32 H 0.11 3.15 7.43 -2.91 -0.02 3.13 16 33 H 0.14 2.15 8.06 -2.91 -0.02 2.12 16 34 H 0.15 1.41 8.06 -2.91 -0.02 1.39 16 35 H 0.16 1.43 8.06 -2.91 -0.02 1.41 16 36 H 0.15 2.02 7.95 -2.91 -0.02 1.99 16 37 H 0.36 15.30 5.66 -92.72 -0.52 14.77 16 38 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -69.01 328.70 3.10 -65.91 By element: Atomic # 1 Polarization: 31.17 SS G_CDS: -0.25 Total: 30.92 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: 4.34 Total: -2.23 kcal Atomic # 7 Polarization: -112.06 SS G_CDS: -3.60 Total: -115.66 kcal Atomic # 8 Polarization: -19.78 SS G_CDS: -0.05 Total: -19.82 kcal Atomic # 9 Polarization: -5.97 SS G_CDS: 0.76 Total: -5.20 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 1.90 Total: 46.10 kcal Total: -69.01 3.10 -65.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662351509.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.774 kcal (2) G-P(sol) polarization free energy of solvation -69.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds