Wall clock time and date at job start Tue Mar 31 2020 02:35:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46506 * 109.46841 * 2 1 4 4 N 1.40519 * 127.42570 * 265.15050 * 3 2 1 5 5 H 0.96997 * 126.16662 * 0.02562 * 4 3 2 6 6 N 1.28705 * 107.67074 * 180.25045 * 4 3 2 7 7 N 1.28402 * 111.08872 * 359.76577 * 6 4 3 8 8 C 1.35144 * 109.87295 * 359.97438 * 7 6 4 9 9 N 1.32521 * 126.88867 * 179.97438 * 8 7 6 10 10 C 1.34066 * 119.99992 * 0.02562 * 9 8 7 11 11 O 1.21796 * 120.00103 * 359.97438 * 10 9 8 12 12 N 1.34782 * 119.99863 * 180.02562 * 10 9 8 13 13 C 1.46495 * 120.00258 * 180.02562 * 12 10 9 14 14 C 1.52992 * 109.47269 * 184.79147 * 13 12 10 15 15 C 1.50694 * 115.55114 * 294.81128 * 14 13 12 16 16 H 1.08008 * 119.99906 * 95.20873 * 15 14 13 17 17 C 1.37875 * 120.00314 * 274.92789 * 15 14 13 18 18 N 1.31509 * 119.99913 * 355.42420 * 17 15 14 19 19 Si 1.86807 * 120.00040 * 175.41703 * 17 15 14 20 20 H 1.48494 * 109.47052 * 60.00642 * 19 17 15 21 21 H 1.48500 * 109.47055 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47106 * 300.00083 * 19 17 15 23 23 C 1.53003 * 117.49834 * 80.48431 * 14 13 12 24 24 C 1.53006 * 117.49908 * 149.14426 * 14 13 12 25 25 H 1.09004 * 109.47294 * 59.99797 * 1 2 3 26 26 H 1.09002 * 109.46896 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47509 * 299.99568 * 1 2 3 28 28 H 1.09002 * 109.47509 * 240.00432 * 2 1 3 29 29 H 1.08997 * 109.47415 * 119.99529 * 2 1 3 30 30 H 0.96999 * 119.99637 * 359.97438 * 12 10 9 31 31 H 1.09001 * 109.47395 * 64.78624 * 13 12 10 32 32 H 1.09007 * 109.47080 * 304.78945 * 13 12 10 33 33 H 0.97001 * 119.99960 * 184.99387 * 18 17 15 34 34 H 1.09003 * 117.50034 * 214.99852 * 23 14 13 35 35 H 1.09002 * 117.49971 * 0.02686 * 23 14 13 36 36 H 1.08996 * 117.49810 * 359.97342 * 24 14 13 37 37 H 1.08995 * 117.50078 * 144.97442 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 7 2.3918 2.1550 -1.1119 5 1 2.3743 1.8706 -2.0391 6 7 2.7659 3.3075 -0.6780 7 7 2.6722 3.3723 0.6009 8 6 2.2065 2.2007 1.0874 9 7 1.9827 1.8999 2.3585 10 6 2.2220 2.8087 3.3146 11 8 2.6456 3.9107 3.0150 12 7 1.9948 2.5026 4.6074 13 6 2.2557 3.4958 5.6521 14 6 2.0320 2.8615 7.0262 15 6 0.6155 2.4440 7.3265 16 1 0.3039 1.4250 7.1500 17 6 -0.2811 3.3613 7.8320 18 7 0.1217 4.5755 8.1368 19 14 -2.0683 2.8794 8.0839 20 1 -2.1449 1.7415 9.0349 21 1 -2.8201 4.0360 8.6339 22 1 -2.6609 2.4780 6.7828 23 6 3.1590 1.9991 7.5982 24 6 2.8769 3.3821 8.1908 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5137 0.8900 30 1 1.6578 1.6249 4.8459 31 1 1.5787 4.3409 5.5274 32 1 3.2866 3.8418 5.5752 33 1 -0.4906 5.1979 8.5594 34 1 2.8759 1.1297 8.1917 35 1 4.0601 1.8841 6.9957 36 1 3.5925 4.1762 7.9778 37 1 2.4082 3.4229 9.1739 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001669989749.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:35:34 Heat of formation + Delta-G solvation = 164.393435 kcal Electronic energy + Delta-G solvation = -21641.509716 eV Core-core repulsion = 18267.035027 eV Total energy + Delta-G solvation = -3374.474689 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.139 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.18965 -38.91865 -36.66049 -36.12519 -34.48511 -32.82428 -32.06459 -31.82101 -30.53184 -26.33047 -25.32528 -24.94855 -23.94810 -22.39684 -21.00622 -20.05156 -19.25787 -18.76238 -17.34129 -16.95977 -16.61677 -15.74390 -15.09319 -14.76774 -14.63088 -14.33405 -13.87104 -13.83480 -13.29451 -13.09340 -12.59179 -12.47990 -12.03827 -11.87034 -11.53825 -11.44383 -11.23077 -11.03571 -10.86716 -10.81851 -10.48323 -10.36839 -10.08804 -9.36948 -8.88998 -8.75368 -8.35559 -8.26042 -8.05966 -7.66539 -5.94737 -4.03434 0.38830 0.57285 2.29924 3.06837 3.35501 3.40795 3.42624 3.94393 4.04192 4.37806 4.45246 4.46279 4.57781 4.74162 4.84405 5.02167 5.31410 5.33371 5.45778 5.55138 5.77240 6.16578 6.26359 6.50228 6.60567 6.66549 6.76868 6.85668 7.10310 7.25834 7.53706 7.58126 7.63056 7.74338 7.93882 8.04690 8.48525 8.75064 8.97368 9.57763 9.62737 11.12697 Molecular weight = 280.14amu Principal moments of inertia in cm(-1) A = 0.019991 B = 0.004327 C = 0.003951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.288596 B = 6469.874140 C = 7085.574339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.146 3.854 3 N -0.425 5.425 4 N -0.319 5.319 5 H 0.474 0.526 6 N 0.098 4.902 7 N -0.267 5.267 8 C 0.556 3.444 9 N -0.608 5.608 10 C 0.662 3.338 11 O -0.592 6.592 12 N -0.689 5.689 13 C 0.179 3.821 14 C 0.025 3.975 15 C -0.496 4.496 16 H 0.059 0.941 17 C 0.073 3.927 18 N -0.876 5.876 19 Si 0.890 3.110 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.277 1.277 23 C -0.210 4.210 24 C -0.142 4.142 25 H 0.057 0.943 26 H 0.084 0.916 27 H 0.077 0.923 28 H 0.092 0.908 29 H 0.117 0.883 30 H 0.402 0.598 31 H 0.064 0.936 32 H 0.037 0.963 33 H 0.261 0.739 34 H 0.077 0.923 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.477 -11.052 -20.427 23.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.026 3.974 3 N -0.242 5.242 4 N -0.170 5.170 5 H 0.330 0.670 6 N 0.101 4.899 7 N -0.162 5.162 8 C 0.190 3.810 9 N -0.370 5.370 10 C 0.360 3.640 11 O -0.469 6.469 12 N -0.339 5.339 13 C 0.055 3.945 14 C 0.024 3.976 15 C -0.533 4.533 16 H 0.077 0.923 17 C -0.131 4.131 18 N -0.512 5.512 19 Si 0.718 3.282 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.202 1.202 23 C -0.247 4.247 24 C -0.180 4.180 25 H 0.076 0.924 26 H 0.102 0.898 27 H 0.096 0.904 28 H 0.111 0.889 29 H 0.135 0.865 30 H 0.236 0.764 31 H 0.082 0.918 32 H 0.056 0.944 33 H 0.071 0.929 34 H 0.095 0.905 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.802 -9.664 -20.235 22.598 hybrid contribution -1.378 -1.115 -0.263 1.793 sum 1.424 -10.779 -20.498 23.203 Atomic orbital electron populations 1.22281 0.93846 1.03703 1.03755 1.21955 0.95599 0.74473 1.05387 1.48961 1.64256 1.12684 0.98273 1.48398 1.56239 1.06979 1.05339 0.66987 1.78067 1.02716 0.99428 1.09658 1.77404 1.22746 1.19293 0.96722 1.21334 0.88227 0.82474 0.88931 1.68707 1.37296 1.37019 0.94002 1.16768 0.79743 0.84013 0.83502 1.90983 1.49240 1.24129 1.82525 1.44881 1.67156 1.18501 1.03396 1.20884 0.97948 0.90231 0.85437 1.19044 0.91353 0.97813 0.89366 1.20318 0.92691 0.95918 1.44422 0.92264 1.24978 0.98336 0.94754 0.95035 1.69985 1.35625 1.05269 1.40341 0.86698 0.85256 0.77824 0.78415 1.20341 1.21363 1.20220 1.23002 1.00561 0.95096 1.06091 1.22459 1.02079 0.93739 0.99749 0.92393 0.89764 0.90410 0.88923 0.86464 0.76420 0.91752 0.94429 0.92934 0.90475 0.91743 0.91840 0.89571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.06 10.24 37.15 0.38 -0.68 16 2 C 0.15 0.84 7.26 -4.04 -0.03 0.81 16 3 N -0.43 -4.17 3.75 -61.90 -0.23 -4.40 16 4 N -0.32 -2.28 8.33 60.35 0.50 -1.78 16 5 H 0.47 0.68 8.96 -331.77 -2.97 -2.30 16 6 N 0.10 1.17 13.33 60.35 0.80 1.98 16 7 N -0.27 -4.66 10.46 30.06 0.31 -4.35 16 8 C 0.56 9.05 8.57 -320.64 -2.75 6.30 16 9 N -0.61 -11.67 10.54 -17.34 -0.18 -11.85 16 10 C 0.66 15.43 8.48 -87.55 -0.74 14.68 16 11 O -0.59 -15.58 14.92 5.10 0.08 -15.50 16 12 N -0.69 -15.90 5.48 -65.38 -0.36 -16.26 16 13 C 0.18 4.51 5.50 -4.05 -0.02 4.49 16 14 C 0.03 0.63 1.47 -155.66 -0.23 0.40 16 15 C -0.50 -13.47 8.59 -34.44 -0.30 -13.77 16 16 H 0.06 1.58 7.82 -52.48 -0.41 1.17 16 17 C 0.07 2.02 5.43 -17.82 -0.10 1.92 16 18 N -0.88 -25.34 12.65 55.43 0.70 -24.64 16 19 Si 0.89 21.44 29.54 -169.99 -5.02 16.41 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 23 C -0.21 -4.71 9.96 -26.69 -0.27 -4.97 16 24 C -0.14 -3.45 9.14 -26.69 -0.24 -3.70 16 25 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 29 H 0.12 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.40 8.75 8.43 -40.82 -0.34 8.40 16 31 H 0.06 1.82 8.14 -51.93 -0.42 1.40 16 32 H 0.04 0.94 8.09 -51.92 -0.42 0.52 16 33 H 0.26 7.26 8.32 -40.82 -0.34 6.92 16 34 H 0.08 1.68 8.14 -51.93 -0.42 1.26 16 35 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 36 H 0.06 1.47 8.14 -51.93 -0.42 1.05 16 37 H 0.09 2.21 8.14 -51.93 -0.42 1.79 16 LS Contribution 328.01 15.07 4.94 4.94 Total: -1.00 -37.32 328.01 -10.26 -47.57 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -7.51 Total: 2.38 kcal Atomic # 6 Polarization: 9.79 SS G_CDS: -4.29 Total: 5.50 kcal Atomic # 7 Polarization: -62.86 SS G_CDS: 1.55 Total: -61.31 kcal Atomic # 8 Polarization: -15.58 SS G_CDS: 0.08 Total: -15.50 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -37.32 -10.26 -47.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669989749.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 211.968 kcal (2) G-P(sol) polarization free energy of solvation -37.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 174.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 164.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds