Wall clock time and date at job start Tue Mar 31 2020 02:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.28724 * 125.31623 * 2 1 4 4 N 1.28983 * 108.98458 * 180.02562 * 3 2 1 5 5 C 1.34185 * 107.25725 * 359.97438 * 4 3 2 6 6 C 1.47999 * 126.70253 * 179.97438 * 5 4 3 7 7 O 1.21537 * 120.00037 * 180.02562 * 6 5 4 8 8 N 1.34770 * 119.99877 * 0.02562 * 6 5 4 9 9 C 1.46499 * 120.00207 * 179.97438 * 8 6 5 10 10 C 1.53780 * 113.61917 * 254.14364 * 9 8 6 11 11 C 1.54055 * 86.98420 * 270.83724 * 10 9 8 12 12 C 1.53004 * 113.61746 * 220.02317 * 11 10 9 13 13 N 1.46506 * 109.46730 * 272.49451 * 12 11 10 14 14 C 1.36935 * 119.99699 * 180.02562 * 13 12 11 15 15 H 1.08003 * 120.00233 * 359.97438 * 14 13 12 16 16 C 1.38818 * 119.99739 * 179.97438 * 14 13 12 17 17 N 1.31617 * 119.99660 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99591 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47380 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.46763 * 120.00378 * 18 16 14 21 21 H 1.48500 * 109.47127 * 239.99874 * 18 16 14 22 22 C 1.53779 * 87.07572 * 334.56575 * 11 10 9 23 23 N 1.28864 * 125.32147 * 180.02562 * 2 1 3 24 24 H 1.08996 * 109.47505 * 89.97555 * 1 2 3 25 25 H 1.09001 * 109.46854 * 209.97633 * 1 2 3 26 26 H 1.09006 * 109.47658 * 329.97002 * 1 2 3 27 27 H 0.96998 * 120.00301 * 0.02562 * 8 6 5 28 28 H 1.09007 * 112.84689 * 25.34123 * 9 8 6 29 29 H 1.09001 * 113.61357 * 25.42613 * 10 9 8 30 30 H 1.09003 * 113.61763 * 156.33267 * 10 9 8 31 31 H 1.08996 * 113.69103 * 89.12651 * 11 10 9 32 32 H 1.09001 * 109.47160 * 32.48957 * 12 11 10 33 33 H 1.08992 * 109.47262 * 152.49426 * 12 11 10 34 34 H 0.96997 * 120.00209 * 359.97438 * 13 12 11 35 35 H 0.97005 * 119.99167 * 179.97438 * 17 16 14 36 36 H 1.08997 * 113.62012 * 270.88114 * 22 11 10 37 37 H 1.09002 * 113.69050 * 139.98884 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2091 1.0504 0.0000 4 7 3.4469 0.6877 -0.0005 5 6 3.4686 -0.6540 -0.0003 6 6 4.6693 -1.5193 -0.0013 7 8 4.5470 -2.7285 -0.0014 8 7 5.8983 -0.9663 -0.0020 9 6 7.0869 -1.8227 -0.0024 10 6 7.8125 -1.8702 1.3526 11 6 8.6238 -0.6532 0.8689 12 6 10.1033 -0.7103 1.2547 13 7 10.2839 -0.1239 2.5851 14 6 11.5330 -0.0641 3.1431 15 1 12.3849 -0.4495 2.6026 16 6 11.7042 0.4919 4.4034 17 7 10.6660 0.9620 5.0618 18 14 13.4081 0.5729 5.1649 19 1 14.3973 -0.0187 4.2286 20 1 13.7640 1.9896 5.4319 21 1 13.4172 -0.1885 6.4398 22 6 8.3420 -1.1344 -0.5643 23 7 2.2100 -1.0514 -0.0005 24 1 -0.3634 0.0004 -1.0276 25 1 -0.3633 -0.8902 0.5135 26 1 -0.3635 0.8897 0.5143 27 1 5.9960 -0.0012 -0.0015 28 1 6.8994 -2.8068 -0.4321 29 1 7.1648 -1.6551 2.2025 30 1 8.4144 -2.7679 1.4944 31 1 8.1609 0.3044 1.1069 32 1 10.4359 -1.7482 1.2669 33 1 10.6903 -0.1492 0.5276 34 1 9.5188 0.2225 3.0704 35 1 10.7857 1.3502 5.9427 36 1 9.0884 -1.8312 -0.9457 37 1 8.1216 -0.3265 -1.2621 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674570400.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:52:47 Heat of formation + Delta-G solvation = 104.691184 kcal Electronic energy + Delta-G solvation = -20887.331750 eV Core-core repulsion = 17510.268177 eV Total energy + Delta-G solvation = -3377.063573 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.139 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -45.59299 -41.36050 -39.53046 -36.42433 -36.29771 -34.56201 -34.36475 -32.78688 -29.90834 -28.54121 -26.62758 -26.60361 -25.12817 -24.11959 -23.00370 -22.46390 -20.34426 -19.64354 -19.04440 -18.76203 -17.88854 -17.28344 -16.70328 -16.26204 -16.10275 -15.64747 -15.29201 -15.24514 -15.02982 -14.53199 -14.28072 -14.14611 -13.73629 -13.36734 -13.20578 -13.11348 -12.91823 -12.72446 -12.39500 -12.29002 -12.11481 -11.92260 -11.84031 -11.54751 -11.52411 -11.36557 -11.14934 -10.84770 -10.21932 -8.95429 -7.93310 -5.21331 -0.22388 0.20039 0.76815 1.47931 1.48893 1.59053 1.66509 1.81496 2.57591 2.73605 3.02264 3.39891 3.56912 3.60804 3.91073 3.94715 3.96836 4.03668 4.22703 4.35575 4.48369 4.55756 4.60667 4.76254 4.84028 4.88877 4.93860 4.94600 5.01968 5.15899 5.25264 5.33920 5.50676 5.63383 6.16973 6.29753 6.77690 6.97596 7.35394 8.14325 8.35914 9.30683 Molecular weight = 280.14amu Principal moments of inertia in cm(-1) A = 0.027401 B = 0.002951 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.627333 B = 9486.384832 C =10115.860982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.114 5.114 3 N -0.061 5.061 4 N -0.267 5.267 5 C 0.115 3.885 6 C 0.621 3.379 7 O -0.541 6.541 8 N -0.675 5.675 9 C 0.125 3.875 10 C -0.142 4.142 11 C -0.116 4.116 12 C 0.160 3.840 13 N -0.747 5.747 14 C -0.242 4.242 15 H 0.077 0.923 16 C -0.080 4.080 17 N -0.971 5.971 18 Si 0.973 3.027 19 H -0.265 1.265 20 H -0.293 1.293 21 H -0.295 1.295 22 C -0.113 4.113 23 N -0.261 5.261 24 H 0.133 0.867 25 H 0.131 0.869 26 H 0.142 0.858 27 H 0.419 0.581 28 H 0.110 0.890 29 H 0.051 0.949 30 H 0.095 0.905 31 H 0.082 0.918 32 H 0.025 0.975 33 H 0.023 0.977 34 H 0.372 0.628 35 H 0.250 0.750 36 H 0.116 0.884 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.517 -2.545 -15.203 26.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.029 5.029 3 N -0.054 5.054 4 N -0.141 5.141 5 C -0.169 4.169 6 C 0.402 3.598 7 O -0.415 6.415 8 N -0.326 5.326 9 C 0.020 3.980 10 C -0.181 4.181 11 C -0.135 4.135 12 C 0.034 3.966 13 N -0.389 5.389 14 C -0.374 4.374 15 H 0.094 0.906 16 C -0.272 4.272 17 N -0.623 5.623 18 Si 0.803 3.197 19 H -0.189 1.189 20 H -0.220 1.220 21 H -0.222 1.222 22 C -0.151 4.151 23 N -0.117 5.117 24 H 0.151 0.849 25 H 0.150 0.850 26 H 0.160 0.840 27 H 0.256 0.744 28 H 0.128 0.872 29 H 0.069 0.931 30 H 0.113 0.887 31 H 0.101 0.899 32 H 0.043 0.957 33 H 0.041 0.959 34 H 0.204 0.796 35 H 0.059 0.941 36 H 0.134 0.866 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -21.784 -2.928 -15.238 26.746 hybrid contribution 0.768 0.408 1.161 1.451 sum -21.016 -2.520 -14.077 25.421 Atomic orbital electron populations 1.23290 0.64855 1.09482 1.08857 1.50842 1.12787 0.99431 1.39885 1.78880 0.96104 1.14469 1.15968 1.76122 1.11198 1.09864 1.16959 1.25126 0.93358 0.90489 1.07935 1.16158 0.81296 0.85386 0.76985 1.90830 1.86064 1.14021 1.50561 1.45361 1.03586 1.11611 1.72026 1.21988 0.83331 0.95195 0.97463 1.23500 0.98465 0.99283 0.96829 1.22780 0.94858 0.98317 0.97523 1.20842 0.94430 0.95602 0.85765 1.42622 1.06387 1.72700 1.17194 1.19715 0.87502 1.31288 0.98865 0.90552 1.25593 1.00986 1.02340 0.98302 1.69836 1.30455 1.47794 1.14176 0.85065 0.79782 0.76853 0.78031 1.18902 1.22043 1.22183 1.23243 0.95374 1.01197 0.95304 1.75048 1.02367 1.15536 1.18755 0.84912 0.85026 0.83987 0.74358 0.87220 0.93061 0.88670 0.89940 0.95742 0.95922 0.79633 0.94124 0.86555 0.88905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.18 11.62 127.77 1.49 1.66 16 2 N -0.11 -1.90 4.39 -206.59 -0.91 -2.81 16 3 N -0.06 -1.30 13.23 37.02 0.49 -0.81 16 4 N -0.27 -6.78 12.26 -52.36 -0.64 -7.42 16 5 C 0.11 3.03 8.14 137.15 1.12 4.14 16 6 C 0.62 17.52 7.84 86.83 0.68 18.20 16 7 O -0.54 -18.22 16.72 -3.83 -0.06 -18.28 16 8 N -0.67 -16.37 5.26 -442.76 -2.33 -18.70 16 9 C 0.12 2.98 4.29 45.52 0.20 3.17 16 10 C -0.14 -4.16 7.45 31.21 0.23 -3.93 16 11 C -0.12 -3.49 3.65 -10.17 -0.04 -3.53 16 12 C 0.16 6.22 6.10 86.38 0.53 6.74 16 13 N -0.75 -38.51 5.60 -343.43 -1.92 -40.44 16 14 C -0.24 -13.73 9.99 84.04 0.84 -12.89 16 15 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 16 C -0.08 -4.71 5.50 84.86 0.47 -4.24 16 17 N -0.97 -60.78 13.06 21.65 0.28 -60.49 16 18 Si 0.97 46.90 29.55 68.60 2.03 48.93 16 19 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 20 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 21 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 22 C -0.11 -2.40 7.38 31.12 0.23 -2.17 16 23 N -0.26 -6.18 12.17 -52.32 -0.64 -6.82 16 24 H 0.13 -0.28 8.14 -2.39 -0.02 -0.30 16 25 H 0.13 -0.04 8.14 -2.39 -0.02 -0.06 16 26 H 0.14 -0.31 8.14 -2.38 -0.02 -0.33 16 27 H 0.42 9.18 8.45 -92.71 -0.78 8.39 16 28 H 0.11 2.59 7.50 -2.38 -0.02 2.58 16 29 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.09 2.76 7.90 -2.39 -0.02 2.74 16 31 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 32 H 0.02 0.95 7.85 -2.39 -0.02 0.93 16 33 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.37 20.57 7.67 -92.71 -0.71 19.86 16 35 H 0.25 15.12 8.31 -92.70 -0.77 14.35 16 36 H 0.12 2.14 8.10 -2.39 -0.02 2.12 16 37 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -78.21 326.12 1.65 -76.56 By element: Atomic # 1 Polarization: 23.51 SS G_CDS: -0.38 Total: 23.13 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: 5.74 Total: 7.16 kcal Atomic # 7 Polarization: -131.82 SS G_CDS: -5.67 Total: -137.49 kcal Atomic # 8 Polarization: -18.22 SS G_CDS: -0.06 Total: -18.28 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 2.03 Total: 48.93 kcal Total: -78.21 1.65 -76.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674570400.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.248 kcal (2) G-P(sol) polarization free energy of solvation -78.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds