Wall clock time and date at job start Tue Mar 31 2020 02:30:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47020 * 2 1 4 4 C 1.53003 * 109.46613 * 119.99587 * 2 1 3 5 5 N 1.46505 * 109.46884 * 174.99888 * 4 2 1 6 6 C 1.36937 * 120.00121 * 180.02562 * 5 4 2 7 7 H 1.07999 * 119.99694 * 0.02562 * 6 5 4 8 8 C 1.38808 * 119.99647 * 180.02562 * 6 5 4 9 9 N 1.31616 * 120.00706 * 359.97438 * 8 6 5 10 10 Si 1.86808 * 119.99713 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.46900 * 0.02562 * 10 8 6 12 12 H 1.48498 * 109.47226 * 119.99720 * 10 8 6 13 13 H 1.48496 * 109.46976 * 240.00120 * 10 8 6 14 14 N 1.46498 * 109.47121 * 239.99573 * 2 1 3 15 15 C 1.46505 * 119.99842 * 300.00035 * 14 2 1 16 16 C 1.34779 * 120.00019 * 120.00318 * 14 2 1 17 17 O 1.21555 * 119.99513 * 6.97685 * 16 14 2 18 18 C 1.47849 * 119.99791 * 186.97511 * 16 14 2 19 19 C 1.39590 * 120.13404 * 20.32972 * 18 16 14 20 20 C 1.37944 * 119.90223 * 179.69896 * 19 18 16 21 21 C 1.38345 * 120.17320 * 0.59266 * 20 19 18 22 22 C 1.38541 * 120.27095 * 359.67636 * 21 20 19 23 23 F 1.35097 * 119.95787 * 180.02562 * 22 21 20 24 24 C 1.38218 * 120.08993 * 0.02562 * 22 21 20 25 25 H 1.09004 * 109.46976 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47420 * 300.00182 * 1 2 3 27 27 H 1.09001 * 109.46812 * 60.00764 * 1 2 3 28 28 H 1.08995 * 109.47489 * 294.99927 * 4 2 1 29 29 H 1.09001 * 109.47382 * 55.00524 * 4 2 1 30 30 H 0.97002 * 119.99716 * 359.97438 * 5 4 2 31 31 H 0.97001 * 120.00176 * 179.97438 * 9 8 6 32 32 H 1.09001 * 109.47062 * 85.94042 * 15 14 2 33 33 H 1.09000 * 109.46835 * 205.93524 * 15 14 2 34 34 H 1.08997 * 109.47502 * 325.93757 * 15 14 2 35 35 H 1.08004 * 120.04817 * 359.97438 * 19 18 16 36 36 H 1.08005 * 119.91053 * 180.29534 * 20 19 18 37 37 H 1.08002 * 119.86485 * 179.70202 * 21 20 19 38 38 H 1.07997 * 120.08779 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2494 5 7 3.5000 -0.8264 1.1907 6 6 4.1837 -1.4388 2.2069 7 1 3.6465 -1.8446 3.0514 8 6 5.5671 -1.5379 2.1515 9 7 6.2218 -1.0438 1.1222 10 14 6.4999 -2.3728 3.5382 11 1 5.5394 -2.8402 4.5697 12 1 7.2517 -3.5347 2.9998 13 1 7.4500 -1.4075 4.1470 14 7 2.0184 -0.6907 -1.1961 15 6 1.6644 -2.0933 -1.4278 16 6 2.7933 -0.0358 -2.0833 17 8 3.1917 1.0846 -1.8314 18 6 3.1586 -0.6802 -3.3628 19 6 2.3991 -1.7434 -3.8540 20 6 2.7406 -2.3371 -5.0514 21 6 3.8409 -1.8895 -5.7605 22 6 4.6031 -0.8384 -5.2770 23 9 5.6759 -0.4061 -5.9750 24 6 4.2673 -0.2315 -4.0815 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 1.7516 -0.1582 2.1370 29 1 1.6053 -1.7198 1.2953 30 1 3.9823 -0.4629 0.4317 31 1 7.1886 -1.1128 1.0837 32 1 0.7015 -2.1459 -1.9359 33 1 2.4282 -2.5632 -2.0474 34 1 1.6001 -2.6145 -0.4726 35 1 1.5427 -2.0978 -3.2995 36 1 2.1502 -3.1566 -5.4339 37 1 4.1066 -2.3611 -6.6951 38 1 4.8612 0.5881 -3.7048 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698812806.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:30:14 Heat of formation + Delta-G solvation = -39.185081 kcal Electronic energy + Delta-G solvation = -22107.993060 eV Core-core repulsion = 18672.477831 eV Total energy + Delta-G solvation = -3435.515229 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -49.97497 -41.61054 -39.33661 -37.87281 -35.95153 -33.96104 -32.34846 -31.96242 -30.92132 -28.13008 -27.40955 -25.41181 -24.40190 -23.61501 -22.28780 -20.56588 -19.15595 -18.95223 -17.96952 -17.38326 -17.05342 -16.85652 -16.68327 -16.50489 -16.33367 -15.32829 -15.21002 -15.12002 -14.76627 -14.27253 -14.19205 -13.87606 -13.68750 -13.59868 -13.38850 -13.12593 -13.00385 -12.83637 -12.51635 -12.46203 -12.10536 -12.00015 -11.79572 -11.73504 -11.01852 -10.91068 -10.18381 -9.75117 -9.59601 -9.01365 -7.94705 -5.25255 -0.28053 0.12832 1.43766 1.45852 1.55880 1.69947 1.97116 2.54013 2.68170 3.17455 3.38251 3.43148 3.75695 3.83976 3.97757 4.01707 4.11238 4.25206 4.29464 4.35779 4.45716 4.63450 4.68606 4.79694 4.86372 4.94437 4.97282 5.00532 5.05060 5.15093 5.19582 5.24576 5.32973 5.46787 5.63899 5.81212 6.24376 6.37468 7.11101 7.30844 8.08385 8.30666 9.28491 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.014517 B = 0.005673 C = 0.004583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.257551 B = 4934.269132 C = 6108.367047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.128 3.872 3 H 0.064 0.936 4 C 0.140 3.860 5 N -0.744 5.744 6 C -0.241 4.241 7 H 0.082 0.918 8 C -0.081 4.081 9 N -0.972 5.972 10 Si 0.976 3.024 11 H -0.260 1.260 12 H -0.293 1.293 13 H -0.298 1.298 14 N -0.587 5.587 15 C 0.058 3.942 16 C 0.547 3.453 17 O -0.588 6.588 18 C -0.119 4.119 19 C -0.107 4.107 20 C -0.085 4.085 21 C -0.121 4.121 22 C 0.071 3.929 23 F -0.148 7.148 24 C -0.125 4.125 25 H 0.083 0.917 26 H 0.080 0.920 27 H 0.065 0.935 28 H 0.030 0.970 29 H 0.043 0.957 30 H 0.370 0.630 31 H 0.247 0.753 32 H 0.108 0.892 33 H 0.085 0.915 34 H 0.072 0.928 35 H 0.187 0.813 36 H 0.190 0.810 37 H 0.171 0.829 38 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.193 -6.580 -13.725 21.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.024 3.976 3 H 0.082 0.918 4 C 0.013 3.987 5 N -0.387 5.387 6 C -0.373 4.373 7 H 0.099 0.901 8 C -0.272 4.272 9 N -0.623 5.623 10 Si 0.805 3.195 11 H -0.184 1.184 12 H -0.220 1.220 13 H -0.226 1.226 14 N -0.317 5.317 15 C -0.083 4.083 16 C 0.337 3.663 17 O -0.469 6.469 18 C -0.122 4.122 19 C -0.125 4.125 20 C -0.102 4.102 21 C -0.139 4.139 22 C 0.052 3.948 23 F -0.127 7.127 24 C -0.145 4.145 25 H 0.102 0.898 26 H 0.099 0.901 27 H 0.084 0.916 28 H 0.048 0.952 29 H 0.061 0.939 30 H 0.202 0.798 31 H 0.056 0.944 32 H 0.126 0.874 33 H 0.103 0.897 34 H 0.091 0.909 35 H 0.203 0.797 36 H 0.207 0.793 37 H 0.189 0.811 38 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -14.990 -6.090 -13.405 21.011 hybrid contribution 1.917 0.571 0.622 2.094 sum -13.073 -5.519 -12.782 19.099 Atomic orbital electron populations 1.21969 0.90505 1.04106 1.03283 1.21355 0.96441 0.96225 0.83560 0.91817 1.21247 0.84010 0.98129 0.95309 1.42587 1.02172 1.69791 1.24136 1.19714 0.89907 1.28050 0.99595 0.90057 1.25651 0.97672 1.03270 1.00651 1.69906 1.06757 1.53010 1.32585 0.85029 0.78476 0.77209 0.78764 1.18413 1.22020 1.22592 1.47626 1.49411 1.13352 1.21349 1.22678 1.02005 0.79836 1.03763 1.18755 0.77699 0.85287 0.84596 1.90742 1.54903 1.22351 1.78950 1.19697 0.97990 0.99597 0.94934 1.22725 1.00574 0.92433 0.96734 1.21568 0.95749 1.00157 0.92755 1.21777 0.95236 0.94548 1.02361 1.17759 0.87383 0.98086 0.91587 1.91478 1.53717 1.89391 1.78074 1.21169 0.97957 1.00729 0.94631 0.89793 0.90142 0.91575 0.95179 0.93914 0.79828 0.94382 0.87406 0.89655 0.90923 0.79656 0.79284 0.81129 0.87071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 9.19 71.98 0.66 -2.37 16 2 C 0.13 4.29 2.80 44.99 0.13 4.42 16 3 H 0.06 2.62 6.92 -2.39 -0.02 2.60 16 4 C 0.14 5.53 5.49 86.38 0.47 6.00 16 5 N -0.74 -39.57 5.43 -343.44 -1.87 -41.44 16 6 C -0.24 -13.78 9.99 84.03 0.84 -12.94 16 7 H 0.08 4.37 7.83 -2.91 -0.02 4.34 16 8 C -0.08 -4.81 5.50 84.86 0.47 -4.35 16 9 N -0.97 -63.31 13.06 21.65 0.28 -63.03 16 10 Si 0.98 47.54 29.55 68.60 2.03 49.57 16 11 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 12 H -0.29 -14.17 7.11 99.48 0.71 -13.47 16 13 H -0.30 -14.73 7.11 99.48 0.71 -14.03 16 14 N -0.59 -19.06 2.24 -825.98 -1.85 -20.91 16 15 C 0.06 1.30 7.72 127.77 0.99 2.28 16 16 C 0.55 21.32 7.22 86.79 0.63 21.95 16 17 O -0.59 -28.84 15.88 -3.89 -0.06 -28.90 16 18 C -0.12 -3.79 5.57 -20.09 -0.11 -3.90 16 19 C -0.11 -2.14 7.61 22.53 0.17 -1.97 16 20 C -0.08 -1.23 10.03 22.23 0.22 -1.01 16 21 C -0.12 -2.23 10.02 22.37 0.22 -2.01 16 22 C 0.07 1.99 7.29 22.34 0.16 2.15 16 23 F -0.15 -4.41 17.26 44.97 0.78 -3.63 16 24 C -0.12 -4.30 9.57 22.58 0.22 -4.08 16 25 H 0.08 1.41 7.67 -2.38 -0.02 1.40 16 26 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.04 1.53 6.91 -2.39 -0.02 1.51 16 30 H 0.37 22.14 7.06 -92.71 -0.65 21.48 16 31 H 0.25 15.67 8.31 -92.71 -0.77 14.90 16 32 H 0.11 1.32 7.03 -2.39 -0.02 1.30 16 33 H 0.09 1.92 5.22 -2.39 -0.01 1.90 16 34 H 0.07 1.76 6.55 -2.39 -0.02 1.74 16 35 H 0.19 2.51 4.04 -2.91 -0.01 2.50 16 36 H 0.19 0.89 8.06 -2.91 -0.02 0.87 16 37 H 0.17 1.99 8.06 -2.91 -0.02 1.97 16 38 H 0.11 4.46 7.79 -2.91 -0.02 4.44 16 Total: -1.00 -82.41 318.63 4.81 -77.60 By element: Atomic # 1 Polarization: 26.14 SS G_CDS: 0.44 Total: 26.57 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: 5.07 Total: 4.17 kcal Atomic # 7 Polarization: -121.94 SS G_CDS: -3.44 Total: -125.38 kcal Atomic # 8 Polarization: -28.84 SS G_CDS: -0.06 Total: -28.90 kcal Atomic # 9 Polarization: -4.41 SS G_CDS: 0.78 Total: -3.63 kcal Atomic # 14 Polarization: 47.54 SS G_CDS: 2.03 Total: 49.57 kcal Total: -82.41 4.81 -77.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698812806.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.419 kcal (2) G-P(sol) polarization free energy of solvation -82.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds