Wall clock time and date at job start Tue Mar 31 2020 02:30:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09002 * 109.46692 * 2 1 4 4 C 1.52996 * 109.46990 * 239.99921 * 2 1 3 5 5 N 1.46498 * 109.47102 * 185.00007 * 4 2 1 6 6 C 1.36938 * 120.00070 * 180.02562 * 5 4 2 7 7 H 1.08000 * 120.00250 * 359.97438 * 6 5 4 8 8 C 1.38814 * 120.00130 * 179.97438 * 6 5 4 9 9 N 1.31622 * 119.99916 * 0.02562 * 8 6 5 10 10 Si 1.86793 * 120.00063 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47331 * 90.00296 * 10 8 6 12 12 H 1.48507 * 109.47200 * 210.00307 * 10 8 6 13 13 H 1.48503 * 109.47538 * 330.00050 * 10 8 6 14 14 N 1.46501 * 109.47024 * 119.99937 * 2 1 3 15 15 C 1.46497 * 119.99716 * 59.99923 * 14 2 1 16 16 C 1.34771 * 119.99751 * 239.99992 * 14 2 1 17 17 O 1.21552 * 120.00449 * 4.33948 * 16 14 2 18 18 C 1.47857 * 119.99537 * 184.34331 * 16 14 2 19 19 C 1.39594 * 120.13352 * 327.84982 * 18 16 14 20 20 C 1.37940 * 119.90417 * 180.27721 * 19 18 16 21 21 C 1.38346 * 120.17611 * 359.47565 * 20 19 18 22 22 C 1.38551 * 120.26626 * 0.22729 * 21 20 19 23 23 F 1.35092 * 119.95527 * 180.02562 * 22 21 20 24 24 C 1.38215 * 120.09109 * 0.04852 * 22 21 20 25 25 H 1.08992 * 109.47169 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47018 * 299.99936 * 1 2 3 27 27 H 1.09004 * 109.46759 * 59.99663 * 1 2 3 28 28 H 1.08994 * 109.47414 * 305.00375 * 4 2 1 29 29 H 1.09008 * 109.47154 * 65.00183 * 4 2 1 30 30 H 0.97003 * 120.00259 * 359.97438 * 5 4 2 31 31 H 0.96999 * 120.00149 * 179.97438 * 9 8 6 32 32 H 1.08998 * 109.47397 * 274.86326 * 15 14 2 33 33 H 1.09003 * 109.47288 * 34.87075 * 15 14 2 34 34 H 1.09003 * 109.46886 * 154.86271 * 15 14 2 35 35 H 1.08001 * 120.04640 * 359.97438 * 19 18 16 36 36 H 1.08005 * 119.91232 * 179.74787 * 20 19 18 37 37 H 1.07998 * 119.86577 * 180.25464 * 21 20 19 38 38 H 1.07998 * 120.08927 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5001 -0.8264 -1.1906 6 6 4.1839 -1.4380 -2.2072 7 1 3.6469 -1.8432 -3.0521 8 6 5.5674 -1.5371 -2.1519 9 7 6.2219 -1.0438 -1.1220 10 14 6.5001 -2.3720 -3.5383 11 1 6.8618 -1.3651 -4.5682 12 1 7.7358 -2.9945 -2.9991 13 1 5.6442 -3.4201 -4.1500 14 7 2.0184 -0.6906 1.1962 15 6 1.6644 -2.0931 1.4280 16 6 2.7932 -0.0356 2.0833 17 8 3.0220 1.1486 1.9325 18 6 3.3650 -0.7576 3.2400 19 6 2.6652 -1.8167 3.8206 20 6 3.2004 -2.4833 4.9031 21 6 4.4338 -2.1120 5.4081 22 6 5.1374 -1.0658 4.8335 23 9 6.3414 -0.7089 5.3313 24 6 4.6088 -0.3866 3.7520 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.6054 -1.7197 -1.2952 29 1 1.7517 -0.1583 -2.1370 30 1 3.9825 -0.4622 -0.4319 31 1 7.1886 -1.1134 -1.0832 32 1 0.6949 -2.1462 1.9232 33 1 1.6142 -2.6177 0.4738 34 1 2.4209 -2.5592 2.0594 35 1 1.7038 -2.1106 3.4259 36 1 2.6572 -3.3002 5.3550 37 1 4.8500 -2.6400 6.2532 38 1 5.1571 0.4291 3.3044 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698812807.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:30:19 Heat of formation + Delta-G solvation = -43.420452 kcal Electronic energy + Delta-G solvation = -22179.398114 eV Core-core repulsion = 18743.699226 eV Total energy + Delta-G solvation = -3435.698888 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -49.97686 -41.60086 -39.35392 -37.87561 -35.92694 -33.93506 -32.37067 -31.95428 -30.96070 -28.05459 -27.41180 -25.42454 -24.41191 -23.64554 -22.30263 -20.55322 -19.14704 -18.95905 -17.97017 -17.40157 -17.10112 -16.88137 -16.67919 -16.50350 -16.32022 -15.37398 -15.21090 -15.13086 -14.73669 -14.29407 -14.14719 -13.91209 -13.69556 -13.57449 -13.37232 -13.14103 -12.97465 -12.81503 -12.52299 -12.49203 -12.16100 -12.11608 -11.81441 -11.74946 -11.01770 -10.91357 -10.17629 -9.73603 -9.61150 -9.02052 -7.95187 -5.25563 -0.24275 0.12437 1.43758 1.46535 1.54830 1.62328 1.98639 2.53800 2.64340 3.18172 3.37945 3.42611 3.75896 3.82734 3.97869 4.01263 4.10019 4.25952 4.27827 4.34420 4.45143 4.65382 4.69561 4.79302 4.85649 4.93877 4.97482 5.01045 5.04342 5.14515 5.18597 5.23192 5.32154 5.46421 5.61693 5.80629 6.23769 6.35896 7.08440 7.30273 8.06787 8.29452 9.27799 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.013213 B = 0.006258 C = 0.004794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.682383 B = 4472.979741 C = 5839.839437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.127 3.873 3 H 0.064 0.936 4 C 0.141 3.859 5 N -0.743 5.743 6 C -0.242 4.242 7 H 0.081 0.919 8 C -0.079 4.079 9 N -0.971 5.971 10 Si 0.976 3.024 11 H -0.290 1.290 12 H -0.298 1.298 13 H -0.263 1.263 14 N -0.585 5.585 15 C 0.054 3.946 16 C 0.549 3.451 17 O -0.589 6.589 18 C -0.116 4.116 19 C -0.101 4.101 20 C -0.083 4.083 21 C -0.122 4.122 22 C 0.072 3.928 23 F -0.148 7.148 24 C -0.126 4.126 25 H 0.082 0.918 26 H 0.064 0.936 27 H 0.080 0.920 28 H 0.043 0.957 29 H 0.032 0.968 30 H 0.369 0.631 31 H 0.248 0.752 32 H 0.104 0.896 33 H 0.071 0.929 34 H 0.090 0.910 35 H 0.181 0.819 36 H 0.191 0.809 37 H 0.171 0.829 38 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.825 -7.018 13.302 20.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.024 3.976 3 H 0.082 0.918 4 C 0.014 3.986 5 N -0.386 5.386 6 C -0.374 4.374 7 H 0.099 0.901 8 C -0.271 4.271 9 N -0.622 5.622 10 Si 0.804 3.196 11 H -0.218 1.218 12 H -0.225 1.225 13 H -0.187 1.187 14 N -0.315 5.315 15 C -0.087 4.087 16 C 0.339 3.661 17 O -0.470 6.470 18 C -0.119 4.119 19 C -0.119 4.119 20 C -0.101 4.101 21 C -0.141 4.141 22 C 0.053 3.947 23 F -0.127 7.127 24 C -0.146 4.146 25 H 0.101 0.899 26 H 0.083 0.917 27 H 0.099 0.901 28 H 0.061 0.939 29 H 0.049 0.951 30 H 0.200 0.800 31 H 0.056 0.944 32 H 0.122 0.878 33 H 0.089 0.911 34 H 0.108 0.892 35 H 0.198 0.802 36 H 0.208 0.792 37 H 0.189 0.811 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -13.702 -6.508 13.033 19.999 hybrid contribution 1.875 0.568 -0.744 2.096 sum -11.827 -5.940 12.289 18.060 Atomic orbital electron populations 1.21958 0.90650 1.04014 1.03226 1.21358 0.96529 0.96232 0.83479 0.91756 1.21241 0.84016 0.98153 0.95227 1.42544 1.02094 1.69857 1.24076 1.19664 0.89891 1.28259 0.99547 0.90092 1.25633 0.97643 1.03232 1.00592 1.69885 1.06812 1.52985 1.32479 0.85109 0.77905 0.78160 0.78383 1.21777 1.22504 1.18705 1.47646 1.49072 1.13523 1.21258 1.22692 1.02236 0.79875 1.03899 1.18704 0.77923 0.86293 0.83170 1.90726 1.61622 1.17654 1.77037 1.19685 0.95799 0.99246 0.97196 1.22333 1.01899 0.92195 0.95438 1.21546 0.94133 1.00069 0.94330 1.21758 0.95906 0.95016 1.01417 1.17773 0.82715 0.98489 0.95734 1.91474 1.42996 1.91597 1.86646 1.21121 0.96472 1.00585 0.96421 0.89868 0.91728 0.90128 0.93917 0.95054 0.79985 0.94354 0.87793 0.91073 0.89191 0.80228 0.79191 0.81116 0.87390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 9.19 71.98 0.66 -2.46 16 2 C 0.13 4.31 2.80 44.99 0.13 4.44 16 3 H 0.06 2.66 6.91 -2.39 -0.02 2.64 16 4 C 0.14 5.53 5.48 86.38 0.47 6.00 16 5 N -0.74 -39.15 5.43 -343.46 -1.87 -41.01 16 6 C -0.24 -13.74 9.99 84.03 0.84 -12.90 16 7 H 0.08 4.32 7.83 -2.91 -0.02 4.30 16 8 C -0.08 -4.69 5.50 84.86 0.47 -4.22 16 9 N -0.97 -62.63 13.06 21.65 0.28 -62.35 16 10 Si 0.98 47.28 29.55 68.60 2.03 49.31 16 11 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 12 H -0.30 -14.63 7.11 99.48 0.71 -13.93 16 13 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 14 N -0.58 -19.12 2.24 -825.99 -1.85 -20.97 16 15 C 0.05 1.23 7.89 127.77 1.01 2.23 16 16 C 0.55 21.45 7.14 86.79 0.62 22.07 16 17 O -0.59 -28.38 16.10 -3.88 -0.06 -28.44 16 18 C -0.12 -3.80 5.47 -20.09 -0.11 -3.91 16 19 C -0.10 -2.09 7.43 22.53 0.17 -1.92 16 20 C -0.08 -1.28 10.03 22.22 0.22 -1.06 16 21 C -0.12 -2.41 10.02 22.37 0.22 -2.19 16 22 C 0.07 2.13 7.29 22.34 0.16 2.29 16 23 F -0.15 -4.69 17.26 44.97 0.78 -3.92 16 24 C -0.13 -4.54 9.58 22.58 0.22 -4.32 16 25 H 0.08 1.46 7.67 -2.39 -0.02 1.44 16 26 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 28 H 0.04 1.53 6.92 -2.39 -0.02 1.51 16 29 H 0.03 1.23 8.14 -2.38 -0.02 1.22 16 30 H 0.37 21.77 7.07 -92.71 -0.65 21.12 16 31 H 0.25 15.59 8.31 -92.71 -0.77 14.82 16 32 H 0.10 1.37 7.46 -2.39 -0.02 1.35 16 33 H 0.07 1.76 6.56 -2.39 -0.02 1.74 16 34 H 0.09 2.02 4.70 -2.39 -0.01 2.01 16 35 H 0.18 2.49 4.83 -2.91 -0.01 2.48 16 36 H 0.19 1.02 8.06 -2.91 -0.02 0.99 16 37 H 0.17 2.19 8.06 -2.91 -0.02 2.16 16 38 H 0.11 4.55 7.96 -2.91 -0.02 4.52 16 Total: -1.00 -81.11 319.54 4.82 -76.29 By element: Atomic # 1 Polarization: 26.58 SS G_CDS: 0.43 Total: 27.02 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: 5.08 Total: 4.07 kcal Atomic # 7 Polarization: -120.90 SS G_CDS: -3.44 Total: -124.34 kcal Atomic # 8 Polarization: -28.38 SS G_CDS: -0.06 Total: -28.44 kcal Atomic # 9 Polarization: -4.69 SS G_CDS: 0.78 Total: -3.92 kcal Atomic # 14 Polarization: 47.28 SS G_CDS: 2.03 Total: 49.31 kcal Total: -81.11 4.82 -76.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698812807.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.872 kcal (2) G-P(sol) polarization free energy of solvation -81.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds