Wall clock time and date at job start Tue Mar 31 2020 02:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46812 * 2 1 4 4 C 1.52999 * 109.47114 * 239.99813 * 2 1 3 5 5 N 1.46500 * 109.47226 * 184.99495 * 4 2 1 6 6 C 1.36937 * 119.99856 * 179.97438 * 5 4 2 7 7 H 1.07995 * 120.00314 * 0.02562 * 6 5 4 8 8 C 1.38818 * 119.99459 * 180.02562 * 6 5 4 9 9 N 1.31621 * 119.99470 * 180.02562 * 8 6 5 10 10 Si 1.86795 * 120.00331 * 359.97438 * 8 6 5 11 11 H 1.48510 * 109.46867 * 90.00273 * 10 8 6 12 12 H 1.48496 * 109.47349 * 209.99962 * 10 8 6 13 13 H 1.48495 * 109.47212 * 330.00740 * 10 8 6 14 14 N 1.46498 * 109.47036 * 120.00065 * 2 1 3 15 15 C 1.34777 * 119.99828 * 274.72131 * 14 2 1 16 16 O 1.21283 * 120.00222 * 0.28168 * 15 14 2 17 17 C 1.50703 * 120.00290 * 180.27728 * 15 14 2 18 18 H 1.08998 * 109.46768 * 345.00598 * 17 15 14 19 19 F 1.39900 * 109.47021 * 104.99882 * 17 15 14 20 20 C 1.50696 * 109.47275 * 225.00283 * 17 15 14 21 21 C 1.38234 * 120.00109 * 294.72288 * 20 17 15 22 22 C 1.38232 * 119.99903 * 179.78689 * 21 20 17 23 23 C 1.38233 * 120.00254 * 0.44368 * 22 21 20 24 24 C 1.38240 * 119.99728 * 359.81444 * 23 22 21 25 25 C 1.38235 * 120.00012 * 359.97265 * 24 23 22 26 26 H 1.08997 * 109.47293 * 300.00104 * 1 2 3 27 27 H 1.09003 * 109.47189 * 60.00254 * 1 2 3 28 28 H 1.09009 * 109.47238 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47415 * 304.99804 * 4 2 1 30 30 H 1.09008 * 109.47087 * 65.00143 * 4 2 1 31 31 H 0.96998 * 120.00120 * 0.02562 * 5 4 2 32 32 H 0.97006 * 119.99889 * 180.02562 * 9 8 6 33 33 H 0.97001 * 120.00384 * 95.00578 * 14 2 1 34 34 H 1.07996 * 119.99578 * 0.02562 * 21 20 17 35 35 H 1.08004 * 119.99826 * 180.27593 * 22 21 20 36 36 H 1.08001 * 120.00260 * 179.82854 * 23 22 21 37 37 H 1.07997 * 119.99943 * 180.02562 * 24 23 22 38 38 H 1.07998 * 119.99863 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8263 -1.1906 6 6 4.1837 -1.4388 -2.2068 7 1 3.6467 -1.8441 -3.0516 8 6 5.5672 -1.5388 -2.1509 9 7 6.2244 -2.1270 -3.1279 10 14 6.4961 -0.8372 -0.6901 11 1 6.6269 -1.8791 0.3601 12 1 7.8472 -0.4012 -1.1256 13 1 5.7528 0.3262 -0.1432 14 7 2.0183 -0.6906 1.1962 15 6 2.1523 -0.0169 2.3557 16 8 1.8638 1.1599 2.4102 17 6 2.6605 -0.7257 3.5847 18 1 2.6130 -1.8034 3.4283 19 9 3.9856 -0.3477 3.8265 20 6 1.8073 -0.3518 4.7692 21 6 1.7964 0.9517 5.2292 22 6 1.0103 1.2955 6.3131 23 6 0.2422 0.3340 6.9426 24 6 0.2572 -0.9706 6.4859 25 6 1.0399 -1.3136 5.3993 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.6054 -1.7198 -1.2951 30 1 1.7516 -0.1583 -2.1370 31 1 3.9824 -0.4627 -0.4317 32 1 7.1911 -2.1972 -3.0887 33 1 2.2491 -1.6318 1.1526 34 1 2.3990 1.7022 4.7395 35 1 0.9983 2.3149 6.6697 36 1 -0.3699 0.6021 7.7911 37 1 -0.3432 -1.7218 6.9774 38 1 1.0513 -2.3328 5.0422 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699379545.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:31:07 Heat of formation + Delta-G solvation = -46.517855 kcal Electronic energy + Delta-G solvation = -21712.088522 eV Core-core repulsion = 18276.255321 eV Total energy + Delta-G solvation = -3435.833202 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -47.98319 -39.95943 -39.01362 -36.43458 -33.83987 -32.70740 -31.52995 -31.10992 -30.43196 -27.30968 -26.01001 -22.89353 -22.75121 -22.04886 -20.91134 -20.43072 -18.06597 -17.53358 -17.31537 -16.62537 -16.16676 -15.67748 -14.89288 -14.84247 -14.57788 -14.48271 -14.05861 -13.90229 -13.60515 -12.98541 -12.87995 -12.85914 -12.55254 -12.45817 -12.30877 -12.23762 -11.92111 -11.33490 -11.17190 -11.12776 -10.90005 -10.57028 -10.17837 -9.82749 -9.64918 -9.12007 -9.09301 -9.04079 -8.94268 -7.31668 -5.82135 -3.19031 0.98560 1.20271 2.44320 2.98671 3.35980 3.42203 3.45158 3.56131 4.13232 4.39520 4.46746 4.55660 4.75291 4.78937 4.91374 5.01424 5.07805 5.25127 5.27751 5.41712 5.42796 5.51034 5.65544 5.75894 5.82791 5.84520 5.95723 6.17529 6.22042 6.26455 6.29537 6.31791 6.50321 6.68313 6.73452 7.47093 7.92260 8.11452 8.36393 9.14545 9.86978 10.05664 11.35804 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.022883 B = 0.004594 C = 0.004115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.324151 B = 6093.384957 C = 6803.535008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.128 3.872 3 H 0.089 0.911 4 C 0.149 3.851 5 N -0.756 5.756 6 C -0.249 4.249 7 H 0.091 0.909 8 C 0.009 3.991 9 N -0.931 5.931 10 Si 0.880 3.120 11 H -0.282 1.282 12 H -0.289 1.289 13 H -0.277 1.277 14 N -0.704 5.704 15 C 0.496 3.504 16 O -0.521 6.521 17 C 0.125 3.875 18 H 0.107 0.893 19 F -0.182 7.182 20 C -0.124 4.124 21 C -0.067 4.067 22 C -0.126 4.126 23 C -0.108 4.108 24 C -0.128 4.128 25 C -0.096 4.096 26 H 0.057 0.943 27 H 0.068 0.932 28 H 0.058 0.942 29 H 0.035 0.965 30 H 0.044 0.956 31 H 0.363 0.637 32 H 0.260 0.740 33 H 0.407 0.593 34 H 0.132 0.868 35 H 0.125 0.875 36 H 0.123 0.877 37 H 0.125 0.875 38 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.970 2.060 19.002 23.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.024 3.976 3 H 0.107 0.893 4 C 0.021 3.979 5 N -0.402 5.402 6 C -0.379 4.379 7 H 0.109 0.891 8 C -0.187 4.187 9 N -0.579 5.579 10 Si 0.710 3.290 11 H -0.209 1.209 12 H -0.215 1.215 13 H -0.203 1.203 14 N -0.356 5.356 15 C 0.278 3.722 16 O -0.396 6.396 17 C 0.086 3.914 18 H 0.125 0.875 19 F -0.162 7.162 20 C -0.125 4.125 21 C -0.085 4.085 22 C -0.144 4.144 23 C -0.126 4.126 24 C -0.146 4.146 25 C -0.114 4.114 26 H 0.076 0.924 27 H 0.087 0.913 28 H 0.077 0.923 29 H 0.052 0.948 30 H 0.062 0.938 31 H 0.196 0.804 32 H 0.070 0.930 33 H 0.242 0.758 34 H 0.150 0.850 35 H 0.143 0.857 36 H 0.141 0.859 37 H 0.143 0.857 38 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -14.092 2.805 18.787 23.652 hybrid contribution 1.063 0.001 0.885 1.383 sum -13.029 2.806 19.672 23.761 Atomic orbital electron populations 1.22082 0.94843 1.02191 1.02419 1.21406 0.93981 0.98057 0.84185 0.89284 1.20973 0.85569 0.97677 0.93651 1.42725 1.01262 1.71360 1.24894 1.19035 0.89917 1.29556 0.99399 0.89074 1.24659 0.96169 1.00348 0.97574 1.69700 1.07432 1.48275 1.32470 0.86623 0.79920 0.79266 0.83208 1.20857 1.21521 1.20317 1.46118 1.65648 1.14568 1.09277 1.20664 0.78963 0.87823 0.84703 1.90696 1.49035 1.15371 1.84517 1.20293 0.78253 1.00544 0.92326 0.87476 1.92935 1.34821 1.93292 1.95163 1.19761 1.00266 0.95220 0.97238 1.21138 0.97111 0.95516 0.94785 1.21186 0.97232 0.99726 0.96281 1.21250 0.98524 0.93349 0.99515 1.21083 0.99759 0.96665 0.97133 1.21005 0.95964 0.98794 0.95669 0.92372 0.91270 0.92277 0.94760 0.93831 0.80415 0.92954 0.75798 0.84973 0.85695 0.85907 0.85680 0.85533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.95 9.49 37.16 0.35 -1.59 16 2 C 0.13 1.97 2.74 -67.93 -0.19 1.78 16 3 H 0.09 1.55 7.57 -51.93 -0.39 1.16 16 4 C 0.15 2.69 5.82 -4.04 -0.02 2.67 16 5 N -0.76 -17.50 5.24 -59.91 -0.31 -17.81 16 6 C -0.25 -6.94 10.47 -15.06 -0.16 -7.10 16 7 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 8 C 0.01 0.26 5.50 -17.43 -0.10 0.16 16 9 N -0.93 -29.08 13.97 55.49 0.78 -28.30 16 10 Si 0.88 22.44 27.73 -169.99 -4.71 17.72 16 11 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 13 H -0.28 -6.91 6.52 56.52 0.37 -6.54 16 14 N -0.70 -10.30 4.52 -53.81 -0.24 -10.54 16 15 C 0.50 7.64 7.13 -10.98 -0.08 7.56 16 16 O -0.52 -9.41 14.88 5.55 0.08 -9.32 16 17 C 0.13 1.65 4.01 -29.04 -0.12 1.53 16 18 H 0.11 1.05 7.74 -51.93 -0.40 0.64 16 19 F -0.18 -2.86 16.91 2.25 0.04 -2.82 16 20 C -0.12 -1.52 5.00 -104.63 -0.52 -2.05 16 21 C -0.07 -0.86 8.57 -39.58 -0.34 -1.20 16 22 C -0.13 -1.31 10.05 -39.59 -0.40 -1.71 16 23 C -0.11 -0.97 10.05 -39.58 -0.40 -1.37 16 24 C -0.13 -1.13 10.05 -39.58 -0.40 -1.53 16 25 C -0.10 -0.95 9.67 -39.58 -0.38 -1.33 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 29 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.04 0.80 8.14 -51.92 -0.42 0.37 16 31 H 0.36 8.48 5.20 -40.82 -0.21 8.27 16 32 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 33 H 0.41 5.33 8.49 -40.82 -0.35 4.98 16 34 H 0.13 1.83 7.43 -52.49 -0.39 1.45 16 35 H 0.13 1.04 8.06 -52.48 -0.42 0.62 16 36 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 37 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 38 H 0.13 0.94 7.95 -52.49 -0.42 0.53 16 LS Contribution 328.15 15.07 4.95 4.95 Total: -1.00 -33.73 328.15 -7.31 -41.04 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -5.13 Total: 9.26 kcal Atomic # 6 Polarization: -1.43 SS G_CDS: -2.74 Total: -4.17 kcal Atomic # 7 Polarization: -56.87 SS G_CDS: 0.22 Total: -56.65 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: 0.08 Total: -9.32 kcal Atomic # 9 Polarization: -2.86 SS G_CDS: 0.04 Total: -2.82 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -4.71 Total: 17.72 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.73 -7.31 -41.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699379545.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.478 kcal (2) G-P(sol) polarization free energy of solvation -33.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds