Wall clock time and date at job start Tue Mar 31 2020 02:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.28715 * 125.32097 * 2 1 4 4 N 1.28980 * 108.98720 * 179.86551 * 3 2 1 5 5 C 1.34188 * 107.25346 * 0.39453 * 4 3 2 6 6 C 1.48010 * 126.70117 * 179.76171 * 5 4 3 7 7 O 1.21528 * 119.99822 * 179.97438 * 6 5 4 8 8 N 1.34776 * 119.99782 * 359.97438 * 6 5 4 9 9 C 1.46498 * 119.99900 * 179.97438 * 8 6 5 10 10 C 1.53002 * 109.47064 * 180.02562 * 9 8 6 11 11 H 1.08997 * 109.46798 * 65.00374 * 10 9 8 12 12 N 1.46494 * 109.47110 * 305.00271 * 10 9 8 13 13 C 1.36944 * 119.99784 * 154.99952 * 12 10 9 14 14 H 1.07996 * 119.99749 * 0.02562 * 13 12 10 15 15 C 1.38817 * 119.99774 * 180.02562 * 13 12 10 16 16 N 1.31618 * 119.99539 * 180.02562 * 15 13 12 17 17 Si 1.86799 * 120.00195 * 0.02562 * 15 13 12 18 18 H 1.48492 * 109.47252 * 89.99885 * 17 15 13 19 19 H 1.48498 * 109.47017 * 210.00159 * 17 15 13 20 20 H 1.48504 * 109.47018 * 329.99719 * 17 15 13 21 21 C 1.52997 * 109.46768 * 185.00328 * 10 9 8 22 22 C 1.52999 * 117.49818 * 248.74461 * 21 10 9 23 23 C 1.52998 * 117.49731 * 180.08821 * 21 10 9 24 24 N 1.28866 * 125.31856 * 180.31318 * 2 1 3 25 25 H 1.09001 * 109.47060 * 269.69410 * 1 2 3 26 26 H 1.09004 * 109.47073 * 29.68898 * 1 2 3 27 27 H 1.09000 * 109.47212 * 149.68981 * 1 2 3 28 28 H 0.97005 * 119.99735 * 0.02562 * 8 6 5 29 29 H 1.09000 * 109.47562 * 300.00963 * 9 8 6 30 30 H 1.09000 * 109.46885 * 60.00783 * 9 8 6 31 31 H 0.97000 * 120.00580 * 334.99800 * 12 10 9 32 32 H 0.97001 * 119.99581 * 180.02562 * 16 15 13 33 33 H 1.09005 * 115.55563 * 34.42225 * 21 10 9 34 34 H 1.09003 * 117.50157 * 0.02562 * 22 21 10 35 35 H 1.09004 * 117.49719 * 145.02363 * 22 21 10 36 36 H 1.09004 * 117.50013 * 214.98186 * 23 21 10 37 37 H 1.09006 * 117.50019 * 359.97438 * 23 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2092 1.0502 0.0000 4 7 3.4470 0.6875 0.0029 5 6 3.4685 -0.6542 -0.0041 6 6 4.6693 -1.5196 -0.0090 7 8 4.5469 -2.7287 -0.0147 8 7 5.8984 -0.9666 -0.0070 9 6 7.0869 -1.8231 -0.0112 10 6 8.3440 -0.9510 -0.0072 11 1 8.3951 -0.3916 0.9269 12 7 8.2935 -0.0164 -1.1341 13 6 8.9858 1.1638 -1.0763 14 1 9.5692 1.4052 -0.2002 15 6 8.9375 2.0497 -2.1439 16 7 9.6032 3.1838 -2.0885 17 14 7.9277 1.6324 -3.6590 18 1 6.5455 2.1483 -3.4903 19 1 8.5472 2.2585 -4.8546 20 1 7.8878 0.1586 -3.8368 21 6 9.5821 -1.8405 -0.1374 22 6 10.5048 -1.9493 1.0782 23 6 10.9483 -1.1520 -0.1509 24 7 2.2101 -1.0515 -0.0057 25 1 -0.3633 -0.0055 1.0277 26 1 -0.3633 0.8928 -0.5090 27 1 -0.3634 -0.8872 -0.5186 28 1 5.9960 -0.0015 -0.0020 29 1 7.0816 -2.4565 0.8759 30 1 7.0809 -2.4484 -0.9041 31 1 7.7698 -0.2333 -1.9212 32 1 9.5692 3.8030 -2.8344 33 1 9.4600 -2.7285 -0.7577 34 1 10.2296 -1.3875 1.9708 35 1 10.9899 -2.9088 1.2575 36 1 11.7251 -1.5872 -0.7796 37 1 10.9651 -0.0652 -0.0674 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713116874.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:53:54 Heat of formation + Delta-G solvation = 142.105926 kcal Electronic energy + Delta-G solvation = -21625.827667 eV Core-core repulsion = 18250.386519 eV Total energy + Delta-G solvation = -3375.441148 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.139 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.52207 -39.54364 -37.65218 -35.41468 -34.85400 -33.48196 -33.28601 -31.27184 -29.44391 -28.31925 -25.44666 -23.60956 -22.98328 -22.19473 -21.69291 -20.78110 -19.84179 -18.57962 -17.76365 -17.56819 -16.83342 -15.93073 -15.46484 -14.97874 -14.49194 -14.34980 -14.19325 -13.94314 -13.67085 -13.61808 -13.20388 -12.82063 -12.47178 -12.27055 -11.51813 -11.43313 -11.25658 -11.23088 -10.92011 -10.86559 -10.74198 -10.52042 -10.32806 -10.23713 -9.71142 -9.53576 -9.38433 -8.99880 -8.93127 -7.33810 -5.78956 -3.15399 0.85651 1.40062 1.58182 2.88186 3.13158 3.38792 3.41676 3.46932 3.91925 4.05235 4.40871 4.46737 4.58407 4.68885 4.77782 5.06741 5.15418 5.31951 5.41548 5.47983 5.58361 5.64666 5.73653 5.79122 5.88095 5.95648 6.13210 6.15545 6.38064 6.57164 6.63957 6.73587 7.00627 7.52468 7.94336 8.02882 8.17169 8.38754 9.15872 9.88779 10.06965 11.38714 Molecular weight = 280.14amu Principal moments of inertia in cm(-1) A = 0.015355 B = 0.005323 C = 0.004242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.016569 B = 5258.867206 C = 6598.788190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.139 5.139 3 N -0.055 5.055 4 N -0.243 5.243 5 C 0.132 3.868 6 C 0.612 3.388 7 O -0.519 6.519 8 N -0.690 5.690 9 C 0.116 3.884 10 C 0.198 3.802 11 H 0.067 0.933 12 N -0.742 5.742 13 C -0.242 4.242 14 H 0.093 0.907 15 C 0.012 3.988 16 N -0.930 5.930 17 Si 0.877 3.123 18 H -0.283 1.283 19 H -0.292 1.292 20 H -0.278 1.278 21 C -0.164 4.164 22 C -0.193 4.193 23 C -0.154 4.154 24 N -0.252 5.252 25 H 0.105 0.895 26 H 0.115 0.885 27 H 0.113 0.887 28 H 0.421 0.579 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.362 0.638 32 H 0.259 0.741 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.808 -8.495 5.663 17.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.052 5.052 3 N -0.049 5.049 4 N -0.118 5.118 5 C -0.152 4.152 6 C 0.392 3.608 7 O -0.393 6.393 8 N -0.343 5.343 9 C -0.008 4.008 10 C 0.088 3.912 11 H 0.085 0.915 12 N -0.385 5.385 13 C -0.372 4.372 14 H 0.111 0.889 15 C -0.184 4.184 16 N -0.577 5.577 17 Si 0.707 3.293 18 H -0.209 1.209 19 H -0.219 1.219 20 H -0.204 1.204 21 C -0.186 4.186 22 C -0.231 4.231 23 C -0.191 4.191 24 N -0.106 5.106 25 H 0.123 0.877 26 H 0.134 0.866 27 H 0.131 0.869 28 H 0.259 0.741 29 H 0.096 0.904 30 H 0.089 0.911 31 H 0.195 0.805 32 H 0.070 0.930 33 H 0.109 0.891 34 H 0.107 0.893 35 H 0.100 0.900 36 H 0.098 0.902 37 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -15.117 -8.619 5.720 18.317 hybrid contribution -0.478 -0.142 -1.330 1.420 sum -15.594 -8.761 4.391 18.418 Atomic orbital electron populations 1.22522 0.68642 1.07161 1.06318 1.50274 1.11077 1.00791 1.43046 1.78983 0.96440 1.13912 1.15600 1.76268 1.09803 1.10052 1.15646 1.25395 0.93196 0.90394 1.06210 1.16096 0.80875 0.85617 0.78260 1.90823 1.85744 1.12744 1.49942 1.45776 1.04016 1.12627 1.71897 1.21834 0.83351 0.93086 1.02540 1.20032 0.89011 0.89157 0.92995 0.91491 1.42843 1.59189 1.19672 1.16771 1.18988 1.23046 0.92325 1.02803 0.88902 1.24612 0.99689 0.96400 0.97744 1.69686 1.45538 1.10245 1.32240 0.86671 0.80649 0.77654 0.84300 1.20925 1.21857 1.20380 1.22933 0.93695 1.01203 1.00736 1.22961 1.05490 1.01627 0.93019 1.22854 0.96376 1.00918 0.98932 1.75050 1.02477 1.14354 1.18699 0.87697 0.86605 0.86872 0.74052 0.90430 0.91095 0.80464 0.93038 0.89050 0.89346 0.90029 0.90188 0.87041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.42 11.62 59.85 0.70 1.11 16 2 N -0.14 -1.60 4.39 -16.64 -0.07 -1.67 16 3 N -0.06 -0.79 13.23 60.35 0.80 0.01 16 4 N -0.24 -4.04 12.26 32.10 0.39 -3.65 16 5 C 0.13 2.17 8.14 -156.24 -1.27 0.90 16 6 C 0.61 10.51 7.84 -12.25 -0.10 10.42 16 7 O -0.52 -9.86 17.10 5.34 0.09 -9.77 16 8 N -0.69 -11.39 5.38 -61.20 -0.33 -11.72 16 9 C 0.12 1.81 5.22 -4.04 -0.02 1.79 16 10 C 0.20 3.48 2.70 -67.93 -0.18 3.29 16 11 H 0.07 1.21 7.84 -51.93 -0.41 0.80 16 12 N -0.74 -16.08 4.34 -53.43 -0.23 -16.31 16 13 C -0.24 -6.28 9.11 -15.05 -0.14 -6.42 16 14 H 0.09 2.58 7.14 -52.49 -0.37 2.20 16 15 C 0.01 0.33 5.50 -17.43 -0.10 0.24 16 16 N -0.93 -28.22 13.97 55.49 0.78 -27.44 16 17 Si 0.88 21.80 27.74 -169.99 -4.71 17.09 16 18 H -0.28 -7.09 7.11 56.52 0.40 -6.68 16 19 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 20 H -0.28 -6.59 6.52 56.52 0.37 -6.22 16 21 C -0.16 -2.69 5.36 -90.62 -0.49 -3.18 16 22 C -0.19 -2.83 10.18 -26.70 -0.27 -3.10 16 23 C -0.15 -2.68 9.78 -26.70 -0.26 -2.94 16 24 N -0.25 -3.66 12.16 32.11 0.39 -3.27 16 25 H 0.10 0.25 8.14 -51.93 -0.42 -0.18 16 26 H 0.12 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.11 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.42 7.28 7.89 -40.82 -0.32 6.96 16 29 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.36 8.03 5.66 -40.82 -0.23 7.80 16 32 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 33 H 0.09 1.42 8.11 -51.93 -0.42 1.00 16 34 H 0.09 1.26 8.05 -51.93 -0.42 0.84 16 35 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 37 H 0.11 2.28 6.23 -51.93 -0.32 1.96 16 LS Contribution 322.97 15.07 4.87 4.87 Total: -1.00 -33.65 322.97 -4.79 -38.43 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: -4.62 Total: 11.33 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: -2.13 Total: 2.11 kcal Atomic # 7 Polarization: -65.78 SS G_CDS: 1.72 Total: -64.06 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.09 Total: -9.77 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.71 Total: 17.09 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -33.65 -4.79 -38.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713116874.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.540 kcal (2) G-P(sol) polarization free energy of solvation -33.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds