Wall clock time and date at job start Tue Mar 31 2020 02:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.28715 * 125.32097 * 2 1 4 4 N 1.28980 * 108.98720 * 179.86551 * 3 2 1 5 5 C 1.34188 * 107.25346 * 0.39453 * 4 3 2 6 6 C 1.48010 * 126.70117 * 179.76171 * 5 4 3 7 7 O 1.21528 * 119.99822 * 179.97438 * 6 5 4 8 8 N 1.34776 * 119.99782 * 359.97438 * 6 5 4 9 9 C 1.46498 * 119.99900 * 179.97438 * 8 6 5 10 10 C 1.53002 * 109.47064 * 180.02562 * 9 8 6 11 11 H 1.08997 * 109.46798 * 65.00374 * 10 9 8 12 12 N 1.46494 * 109.47110 * 305.00271 * 10 9 8 13 13 C 1.36944 * 119.99784 * 154.99952 * 12 10 9 14 14 H 1.07996 * 119.99749 * 0.02562 * 13 12 10 15 15 C 1.38817 * 119.99774 * 180.02562 * 13 12 10 16 16 N 1.31618 * 119.99539 * 180.02562 * 15 13 12 17 17 Si 1.86799 * 120.00195 * 0.02562 * 15 13 12 18 18 H 1.48492 * 109.47252 * 89.99885 * 17 15 13 19 19 H 1.48498 * 109.47017 * 210.00159 * 17 15 13 20 20 H 1.48504 * 109.47018 * 329.99719 * 17 15 13 21 21 C 1.52997 * 109.46768 * 185.00328 * 10 9 8 22 22 C 1.52999 * 117.49818 * 248.74461 * 21 10 9 23 23 C 1.52998 * 117.49731 * 180.08821 * 21 10 9 24 24 N 1.28866 * 125.31856 * 180.31318 * 2 1 3 25 25 H 1.09001 * 109.47060 * 269.69410 * 1 2 3 26 26 H 1.09004 * 109.47073 * 29.68898 * 1 2 3 27 27 H 1.09000 * 109.47212 * 149.68981 * 1 2 3 28 28 H 0.97005 * 119.99735 * 0.02562 * 8 6 5 29 29 H 1.09000 * 109.47562 * 300.00963 * 9 8 6 30 30 H 1.09000 * 109.46885 * 60.00783 * 9 8 6 31 31 H 0.97000 * 120.00580 * 334.99800 * 12 10 9 32 32 H 0.97001 * 119.99581 * 180.02562 * 16 15 13 33 33 H 1.09005 * 115.55563 * 34.42225 * 21 10 9 34 34 H 1.09003 * 117.50157 * 0.02562 * 22 21 10 35 35 H 1.09004 * 117.49719 * 145.02363 * 22 21 10 36 36 H 1.09004 * 117.50013 * 214.98186 * 23 21 10 37 37 H 1.09006 * 117.50019 * 359.97438 * 23 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2092 1.0502 0.0000 4 7 3.4470 0.6875 0.0029 5 6 3.4685 -0.6542 -0.0041 6 6 4.6693 -1.5196 -0.0090 7 8 4.5469 -2.7287 -0.0147 8 7 5.8984 -0.9666 -0.0070 9 6 7.0869 -1.8231 -0.0112 10 6 8.3440 -0.9510 -0.0072 11 1 8.3951 -0.3916 0.9269 12 7 8.2935 -0.0164 -1.1341 13 6 8.9858 1.1638 -1.0763 14 1 9.5692 1.4052 -0.2002 15 6 8.9375 2.0497 -2.1439 16 7 9.6032 3.1838 -2.0885 17 14 7.9277 1.6324 -3.6590 18 1 6.5455 2.1483 -3.4903 19 1 8.5472 2.2585 -4.8546 20 1 7.8878 0.1586 -3.8368 21 6 9.5821 -1.8405 -0.1374 22 6 10.5048 -1.9493 1.0782 23 6 10.9483 -1.1520 -0.1509 24 7 2.2101 -1.0515 -0.0057 25 1 -0.3633 -0.0055 1.0277 26 1 -0.3633 0.8928 -0.5090 27 1 -0.3634 -0.8872 -0.5186 28 1 5.9960 -0.0015 -0.0020 29 1 7.0816 -2.4565 0.8759 30 1 7.0809 -2.4484 -0.9041 31 1 7.7698 -0.2333 -1.9212 32 1 9.5692 3.8030 -2.8344 33 1 9.4600 -2.7285 -0.7577 34 1 10.2296 -1.3875 1.9708 35 1 10.9899 -2.9088 1.2575 36 1 11.7251 -1.5872 -0.7796 37 1 10.9651 -0.0652 -0.0674 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713116874.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:53:53 Heat of formation + Delta-G solvation = 115.805559 kcal Electronic energy + Delta-G solvation = -21626.968137 eV Core-core repulsion = 18250.386519 eV Total energy + Delta-G solvation = -3376.581618 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.139 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -45.58444 -40.88149 -39.08917 -36.42461 -36.16845 -35.25024 -34.37709 -33.12310 -30.64498 -29.44448 -26.71373 -25.15921 -24.19511 -23.58037 -22.99156 -22.07614 -21.27579 -20.00231 -19.17058 -18.76130 -17.91693 -17.26925 -17.00631 -16.32143 -16.03192 -15.88332 -15.41221 -15.25863 -14.70000 -14.62679 -14.43935 -14.12031 -14.10316 -13.19435 -13.15242 -13.01172 -12.75387 -12.39577 -12.35392 -12.27902 -12.24189 -12.08470 -11.69293 -11.62118 -11.51802 -10.98931 -10.94174 -10.79929 -10.25886 -9.29734 -7.95081 -5.26938 -0.21584 0.21719 0.79629 1.39420 1.41311 1.46481 1.73113 1.85236 2.52048 2.78326 3.01024 3.06945 3.41192 3.65343 3.82788 3.94874 4.02809 4.17948 4.22040 4.34216 4.38848 4.48583 4.52899 4.59563 4.64743 4.77616 4.95498 4.95692 5.03796 5.21508 5.28927 5.44961 5.54427 5.87504 6.19544 6.27510 6.77639 6.99353 7.13595 7.87885 8.05702 9.26152 Molecular weight = 280.14amu Principal moments of inertia in cm(-1) A = 0.015355 B = 0.005323 C = 0.004242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.016569 B = 5258.867206 C = 6598.788190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.114 5.114 3 N -0.064 5.064 4 N -0.273 5.273 5 C 0.113 3.887 6 C 0.617 3.383 7 O -0.541 6.541 8 N -0.690 5.690 9 C 0.123 3.877 10 C 0.198 3.802 11 H 0.062 0.938 12 N -0.744 5.744 13 C -0.204 4.204 14 H 0.068 0.932 15 C -0.055 4.055 16 N -0.981 5.981 17 Si 0.935 3.065 18 H -0.285 1.285 19 H -0.303 1.303 20 H -0.257 1.257 21 C -0.167 4.167 22 C -0.161 4.161 23 C -0.178 4.178 24 N -0.257 5.257 25 H 0.133 0.867 26 H 0.141 0.859 27 H 0.134 0.866 28 H 0.417 0.583 29 H 0.100 0.900 30 H 0.075 0.925 31 H 0.363 0.637 32 H 0.254 0.746 33 H 0.109 0.891 34 H 0.092 0.908 35 H 0.111 0.889 36 H 0.088 0.912 37 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.730 -10.683 6.068 20.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.029 5.029 3 N -0.057 5.057 4 N -0.147 5.147 5 C -0.170 4.170 6 C 0.397 3.603 7 O -0.416 6.416 8 N -0.342 5.342 9 C 0.000 4.000 10 C 0.090 3.910 11 H 0.080 0.920 12 N -0.386 5.386 13 C -0.335 4.335 14 H 0.086 0.914 15 C -0.247 4.247 16 N -0.633 5.633 17 Si 0.765 3.235 18 H -0.212 1.212 19 H -0.230 1.230 20 H -0.182 1.182 21 C -0.188 4.188 22 C -0.198 4.198 23 C -0.215 4.215 24 N -0.113 5.113 25 H 0.151 0.849 26 H 0.159 0.841 27 H 0.152 0.848 28 H 0.255 0.745 29 H 0.118 0.882 30 H 0.093 0.907 31 H 0.196 0.804 32 H 0.063 0.937 33 H 0.127 0.873 34 H 0.111 0.889 35 H 0.129 0.871 36 H 0.106 0.894 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -17.061 -10.855 6.154 21.137 hybrid contribution -0.010 0.498 -1.318 1.409 sum -17.071 -10.357 4.837 20.544 Atomic orbital electron populations 1.23295 0.64800 1.09491 1.08867 1.50887 1.12796 0.99472 1.39785 1.78895 0.96096 1.14581 1.16171 1.76222 1.11211 1.10340 1.16929 1.25221 0.93589 0.90387 1.07834 1.16133 0.81146 0.85408 0.77639 1.90801 1.86107 1.13516 1.51144 1.45793 1.04277 1.12417 1.71665 1.21818 0.81850 0.92560 1.03804 1.20180 0.90850 0.88929 0.91089 0.92045 1.42830 1.58562 1.19205 1.18016 1.18926 1.20534 0.93023 1.01021 0.91411 1.25230 1.01857 0.96737 1.00828 1.69842 1.48512 1.11831 1.33078 0.85698 0.78739 0.78342 0.80705 1.21198 1.23027 1.18233 1.22865 0.92213 1.01165 1.02594 1.23033 1.02947 1.02026 0.91815 1.22730 0.97709 0.99046 1.02062 1.75012 1.02095 1.15332 1.18860 0.84904 0.84119 0.84790 0.74545 0.88234 0.90668 0.80429 0.93726 0.87340 0.88944 0.87101 0.89360 0.90912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.40 11.62 127.77 1.49 1.89 16 2 N -0.11 -2.38 4.39 -206.57 -0.91 -3.28 16 3 N -0.06 -1.73 13.23 37.02 0.49 -1.24 16 4 N -0.27 -8.94 12.26 -52.36 -0.64 -9.58 16 5 C 0.11 3.63 8.14 137.15 1.12 4.74 16 6 C 0.62 20.54 7.84 86.84 0.68 21.22 16 7 O -0.54 -19.80 17.10 -3.80 -0.07 -19.87 16 8 N -0.69 -22.01 5.38 -465.82 -2.51 -24.52 16 9 C 0.12 3.59 5.22 86.38 0.45 4.04 16 10 C 0.20 6.66 2.70 44.99 0.12 6.78 16 11 H 0.06 2.16 7.84 -2.39 -0.02 2.14 16 12 N -0.74 -31.72 4.34 -322.95 -1.40 -33.12 16 13 C -0.20 -10.76 9.11 84.03 0.77 -9.99 16 14 H 0.07 3.90 7.14 -2.91 -0.02 3.88 16 15 C -0.06 -3.15 5.50 84.86 0.47 -2.68 16 16 N -0.98 -61.65 13.97 21.65 0.30 -61.35 16 17 Si 0.94 45.61 27.74 68.60 1.90 47.52 16 18 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 19 H -0.30 -15.22 7.11 99.48 0.71 -14.52 16 20 H -0.26 -11.50 6.52 99.48 0.65 -10.85 16 21 C -0.17 -5.11 5.36 -10.80 -0.06 -5.17 16 22 C -0.16 -4.25 10.18 30.62 0.31 -3.94 16 23 C -0.18 -6.07 9.78 30.62 0.30 -5.77 16 24 N -0.26 -7.08 12.16 -52.31 -0.64 -7.72 16 25 H 0.13 0.12 8.14 -2.39 -0.02 0.10 16 26 H 0.14 0.15 8.14 -2.38 -0.02 0.13 16 27 H 0.13 0.27 8.14 -2.39 -0.02 0.25 16 28 H 0.42 14.23 7.89 -92.70 -0.73 13.49 16 29 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 30 H 0.08 2.18 8.14 -2.39 -0.02 2.17 16 31 H 0.36 15.57 5.66 -92.71 -0.52 15.04 16 32 H 0.25 15.45 8.31 -92.71 -0.77 14.68 16 33 H 0.11 3.00 8.11 -2.38 -0.02 2.99 16 34 H 0.09 2.40 8.05 -2.39 -0.02 2.38 16 35 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 36 H 0.09 2.82 8.14 -2.39 -0.02 2.80 16 37 H 0.07 3.06 6.23 -2.38 -0.01 3.05 16 Total: -1.00 -74.65 322.97 1.98 -72.67 By element: Atomic # 1 Polarization: 29.57 SS G_CDS: -0.19 Total: 29.38 kcal Atomic # 6 Polarization: 5.49 SS G_CDS: 5.64 Total: 11.13 kcal Atomic # 7 Polarization: -135.51 SS G_CDS: -5.30 Total: -140.82 kcal Atomic # 8 Polarization: -19.80 SS G_CDS: -0.07 Total: -19.87 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 1.90 Total: 47.52 kcal Total: -74.65 1.98 -72.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713116874.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.472 kcal (2) G-P(sol) polarization free energy of solvation -74.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds