Wall clock time and date at job start Tue Mar 31 2020 02:30:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47202 * 2 1 4 4 C 1.53004 * 109.47274 * 240.00077 * 2 1 3 5 5 N 1.46493 * 109.47268 * 185.00382 * 4 2 1 6 6 C 1.36940 * 120.00365 * 180.02562 * 5 4 2 7 7 H 1.08005 * 119.99217 * 359.97438 * 6 5 4 8 8 C 1.38807 * 120.00530 * 179.97438 * 6 5 4 9 9 N 1.31620 * 119.99906 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00249 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.46877 * 359.97438 * 10 8 6 12 12 H 1.48493 * 109.47524 * 119.99890 * 10 8 6 13 13 H 1.48502 * 109.47005 * 239.99747 * 10 8 6 14 14 N 1.46497 * 109.47398 * 119.99882 * 2 1 3 15 15 C 1.46498 * 120.00255 * 59.99797 * 14 2 1 16 16 C 1.34779 * 120.00299 * 239.99998 * 14 2 1 17 17 O 1.21572 * 119.99837 * 355.47557 * 16 14 2 18 18 C 1.47721 * 120.00199 * 175.47060 * 16 14 2 19 19 C 1.39652 * 120.12026 * 221.22266 * 18 16 14 20 20 C 1.37837 * 119.87790 * 179.74836 * 19 18 16 21 21 C 1.38657 * 120.11991 * 0.50387 * 20 19 18 22 22 F 1.35104 * 119.88045 * 179.74372 * 21 20 19 23 23 C 1.38657 * 120.23655 * 359.77133 * 21 20 19 24 24 C 1.37834 * 120.12008 * 359.97438 * 23 21 20 25 25 H 1.09001 * 109.47202 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47181 * 60.00382 * 1 2 3 27 27 H 1.08995 * 109.47212 * 300.00096 * 1 2 3 28 28 H 1.09002 * 109.46526 * 304.99827 * 4 2 1 29 29 H 1.08996 * 109.47268 * 64.99210 * 4 2 1 30 30 H 0.97008 * 120.00305 * 359.97438 * 5 4 2 31 31 H 0.96996 * 119.99947 * 179.97438 * 9 8 6 32 32 H 1.09003 * 109.47470 * 95.16863 * 15 14 2 33 33 H 1.09000 * 109.47751 * 215.17732 * 15 14 2 34 34 H 1.09008 * 109.46810 * 335.17680 * 15 14 2 35 35 H 1.07998 * 120.05608 * 359.97438 * 19 18 16 36 36 H 1.08005 * 119.94063 * 180.25606 * 20 19 18 37 37 H 1.08004 * 119.93871 * 179.97438 * 23 21 20 38 38 H 1.08004 * 120.05822 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5000 -0.8264 -1.1906 6 6 4.1839 -1.4380 -2.2072 7 1 3.6467 -1.8431 -3.0521 8 6 5.5673 -1.5372 -2.1518 9 7 6.2219 -1.0431 -1.1224 10 14 6.5001 -2.3720 -3.5383 11 1 5.5396 -2.8395 -4.5699 12 1 7.4503 -1.4069 -4.1472 13 1 7.2519 -3.5340 -2.9998 14 7 2.0183 -0.6906 1.1961 15 6 1.6645 -2.0931 1.4281 16 6 2.7932 -0.0356 2.0833 17 8 3.1549 1.1017 1.8512 18 6 3.2030 -0.6995 3.3377 19 6 3.2038 0.0121 4.5393 20 6 3.5821 -0.6137 5.7077 21 6 3.9714 -1.9444 5.6897 22 9 4.3462 -2.5516 6.8369 23 6 3.9779 -2.6540 4.4985 24 6 3.5964 -2.0393 3.3252 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 0.5138 0.8899 28 1 1.6053 -1.7198 -1.2951 29 1 1.7516 -0.1584 -2.1370 30 1 3.9824 -0.4623 -0.4318 31 1 7.1885 -1.1127 -1.0835 32 1 2.4609 -2.7357 1.0527 33 1 1.5338 -2.2630 2.4968 34 1 0.7352 -2.3243 0.9072 35 1 2.9051 1.0499 4.5536 36 1 3.5791 -0.0655 6.6383 37 1 4.2823 -3.6902 4.4900 38 1 3.6023 -2.5929 2.3978 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715321176.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:30:26 Heat of formation + Delta-G solvation = -53.583058 kcal Electronic energy + Delta-G solvation = -22053.395588 eV Core-core repulsion = 18617.256016 eV Total energy + Delta-G solvation = -3436.139572 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.98528 -41.51798 -39.36276 -37.80859 -35.88420 -33.83724 -32.30838 -32.08260 -30.97053 -27.98242 -27.37936 -25.13138 -24.32698 -24.02075 -22.22841 -20.44090 -19.11754 -18.70509 -18.56223 -17.65108 -17.18897 -16.72905 -16.64616 -16.29792 -15.63762 -15.41613 -15.22154 -15.15216 -14.70957 -14.36716 -14.06175 -13.92486 -13.71851 -13.61758 -13.46160 -13.22611 -12.98828 -12.86678 -12.79395 -12.50707 -12.09100 -12.02312 -11.79108 -11.70014 -11.04721 -10.90390 -10.18316 -9.81783 -9.58458 -8.99621 -7.93043 -5.23279 -0.27732 0.17948 1.45771 1.47349 1.57278 1.65786 2.00255 2.54471 2.55583 3.13091 3.39944 3.45120 3.68247 3.83012 3.89715 4.09215 4.15922 4.25944 4.29231 4.33423 4.46901 4.63570 4.77658 4.80174 4.82033 4.87850 4.92040 4.99734 5.02777 5.06854 5.16654 5.25198 5.32883 5.48765 5.64032 5.75430 6.26444 6.38289 7.12302 7.33137 8.09860 8.32753 9.30041 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.015324 B = 0.005414 C = 0.004430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.743803 B = 5170.932722 C = 6318.543822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.127 3.873 3 H 0.068 0.932 4 C 0.142 3.858 5 N -0.743 5.743 6 C -0.241 4.241 7 H 0.079 0.921 8 C -0.077 4.077 9 N -0.969 5.969 10 Si 0.974 3.026 11 H -0.263 1.263 12 H -0.298 1.298 13 H -0.292 1.292 14 N -0.589 5.589 15 C 0.073 3.927 16 C 0.552 3.448 17 O -0.583 6.583 18 C -0.149 4.149 19 C -0.045 4.045 20 C -0.152 4.152 21 C 0.112 3.888 22 F -0.137 7.137 23 C -0.155 4.155 24 C -0.061 4.061 25 H 0.079 0.921 26 H 0.082 0.918 27 H 0.064 0.936 28 H 0.039 0.961 29 H 0.030 0.970 30 H 0.371 0.629 31 H 0.248 0.752 32 H 0.050 0.950 33 H 0.090 0.910 34 H 0.097 0.903 35 H 0.144 0.856 36 H 0.168 0.832 37 H 0.161 0.839 38 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.890 -3.917 13.036 18.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.024 3.976 3 H 0.086 0.914 4 C 0.015 3.985 5 N -0.386 5.386 6 C -0.373 4.373 7 H 0.097 0.903 8 C -0.269 4.269 9 N -0.620 5.620 10 Si 0.803 3.197 11 H -0.187 1.187 12 H -0.226 1.226 13 H -0.220 1.220 14 N -0.319 5.319 15 C -0.069 4.069 16 C 0.342 3.658 17 O -0.464 6.464 18 C -0.152 4.152 19 C -0.064 4.064 20 C -0.170 4.170 21 C 0.093 3.907 22 F -0.116 7.116 23 C -0.173 4.173 24 C -0.079 4.079 25 H 0.098 0.902 26 H 0.101 0.899 27 H 0.083 0.917 28 H 0.057 0.943 29 H 0.048 0.952 30 H 0.203 0.797 31 H 0.057 0.943 32 H 0.068 0.932 33 H 0.109 0.891 34 H 0.115 0.885 35 H 0.162 0.838 36 H 0.185 0.815 37 H 0.179 0.821 38 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -12.736 -3.466 12.754 18.354 hybrid contribution 1.356 -0.159 -0.488 1.449 sum -11.380 -3.625 12.266 17.120 Atomic orbital electron populations 1.21982 0.90941 1.03835 1.03298 1.21352 0.96224 0.96429 0.83598 0.91356 1.21224 0.84124 0.97951 0.95238 1.42555 1.02047 1.69808 1.24159 1.19688 0.89908 1.28156 0.99559 0.90273 1.25591 0.97559 1.03180 1.00549 1.69888 1.06821 1.52883 1.32444 0.85062 0.78481 0.77268 0.78858 1.18697 1.22593 1.21962 1.47690 1.49414 1.13380 1.21448 1.22199 1.01842 0.79790 1.03066 1.18700 0.77614 0.85332 0.84169 1.90756 1.56315 1.20837 1.78480 1.19954 1.06244 0.95376 0.93615 1.21124 0.95202 1.00040 0.89998 1.21275 1.02166 0.93249 1.00312 1.18040 0.98829 0.91891 0.81957 1.91512 1.88758 1.83370 1.47931 1.21277 1.03079 1.02432 0.90539 1.21532 0.94418 0.92863 0.99123 0.90184 0.89948 0.91695 0.94295 0.95170 0.79699 0.94292 0.93163 0.89120 0.88461 0.83795 0.81460 0.82104 0.83933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.18 9.18 71.98 0.66 -2.52 16 2 C 0.13 4.26 2.79 44.99 0.13 4.39 16 3 H 0.07 2.75 6.91 -2.39 -0.02 2.73 16 4 C 0.14 5.55 5.56 86.38 0.48 6.03 16 5 N -0.74 -38.71 5.43 -343.46 -1.87 -40.58 16 6 C -0.24 -13.59 9.99 84.03 0.84 -12.75 16 7 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 8 C -0.08 -4.49 5.50 84.86 0.47 -4.02 16 9 N -0.97 -61.55 13.06 21.65 0.28 -61.26 16 10 Si 0.97 46.76 29.55 68.60 2.03 48.78 16 11 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 12 H -0.30 -14.53 7.11 99.48 0.71 -13.83 16 13 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 14 N -0.59 -19.23 2.24 -826.13 -1.85 -21.08 16 15 C 0.07 1.79 8.05 127.77 1.03 2.82 16 16 C 0.55 20.74 7.02 86.75 0.61 21.35 16 17 O -0.58 -27.05 16.28 -3.94 -0.06 -27.11 16 18 C -0.15 -4.54 5.15 -20.09 -0.10 -4.64 16 19 C -0.04 -1.14 9.65 22.52 0.22 -0.93 16 20 C -0.15 -3.17 10.01 22.27 0.22 -2.94 16 21 C 0.11 2.49 7.31 22.47 0.16 2.65 16 22 F -0.14 -3.00 17.26 44.97 0.78 -2.22 16 23 C -0.15 -3.50 10.01 22.27 0.22 -3.27 16 24 C -0.06 -1.65 7.61 22.52 0.17 -1.48 16 25 H 0.08 1.46 6.67 -2.39 -0.02 1.45 16 26 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.04 1.41 7.84 -2.39 -0.02 1.39 16 29 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.37 21.57 7.07 -92.70 -0.65 20.91 16 31 H 0.25 15.31 8.31 -92.71 -0.77 14.54 16 32 H 0.05 1.43 6.85 -2.39 -0.02 1.41 16 33 H 0.09 1.82 5.99 -2.39 -0.01 1.80 16 34 H 0.10 1.88 6.44 -2.38 -0.02 1.86 16 35 H 0.14 3.47 8.06 -2.91 -0.02 3.45 16 36 H 0.17 2.49 8.06 -2.91 -0.02 2.46 16 37 H 0.16 2.89 8.06 -2.91 -0.02 2.87 16 38 H 0.14 4.02 5.52 -2.91 -0.02 4.00 16 Total: -1.00 -74.45 321.01 4.84 -69.61 By element: Atomic # 1 Polarization: 28.75 SS G_CDS: 0.43 Total: 29.18 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: 5.11 Total: 4.69 kcal Atomic # 7 Polarization: -119.49 SS G_CDS: -3.44 Total: -122.93 kcal Atomic # 8 Polarization: -27.05 SS G_CDS: -0.06 Total: -27.11 kcal Atomic # 9 Polarization: -3.00 SS G_CDS: 0.78 Total: -2.22 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.78 kcal Total: -74.45 4.84 -69.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715321176.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.027 kcal (2) G-P(sol) polarization free energy of solvation -74.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds