Wall clock time and date at job start Tue Mar 31 2020 02:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 109.47224 * 2 1 4 4 C 1.53001 * 109.46963 * 239.99901 * 2 1 3 5 5 N 1.46500 * 109.46620 * 184.99932 * 4 2 1 6 6 C 1.36939 * 119.99819 * 180.02562 * 5 4 2 7 7 H 1.07999 * 119.99722 * 0.02562 * 6 5 4 8 8 C 1.38814 * 120.00067 * 180.02562 * 6 5 4 9 9 N 1.31611 * 120.00013 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99891 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47226 * 90.00056 * 10 8 6 12 12 H 1.48501 * 109.47219 * 210.00040 * 10 8 6 13 13 H 1.48499 * 109.47218 * 330.00142 * 10 8 6 14 14 N 1.46501 * 109.46873 * 120.00133 * 2 1 3 15 15 C 1.34780 * 119.99572 * 275.00097 * 14 2 1 16 16 O 1.21548 * 120.00492 * 359.97438 * 15 14 2 17 17 C 1.47851 * 119.99404 * 180.02562 * 15 14 2 18 18 C 1.39576 * 120.13897 * 179.97438 * 17 15 14 19 19 C 1.37956 * 119.84932 * 179.71861 * 18 17 15 20 20 C 1.38363 * 120.14702 * 0.28830 * 19 18 17 21 21 C 1.50695 * 119.85356 * 180.02562 * 20 19 18 22 22 F 1.39899 * 109.47310 * 89.99989 * 21 20 19 23 23 C 1.38359 * 120.29270 * 359.97438 * 20 19 18 24 24 C 1.37965 * 120.14128 * 359.97438 * 23 20 19 25 25 H 1.08997 * 109.47224 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.46971 * 300.00419 * 1 2 3 27 27 H 1.09000 * 109.46933 * 60.00024 * 1 2 3 28 28 H 1.08998 * 109.47215 * 305.00380 * 4 2 1 29 29 H 1.09004 * 109.47103 * 65.00552 * 4 2 1 30 30 H 0.97002 * 120.00648 * 0.02562 * 5 4 2 31 31 H 0.96998 * 119.99996 * 180.02562 * 9 8 6 32 32 H 0.96996 * 119.99915 * 94.99668 * 14 2 1 33 33 H 1.08002 * 120.07892 * 0.02562 * 18 17 15 34 34 H 1.08008 * 119.92898 * 180.25846 * 19 18 17 35 35 H 1.08999 * 109.46979 * 209.99555 * 21 20 19 36 36 H 1.09004 * 109.47629 * 329.99260 * 21 20 19 37 37 H 1.07994 * 119.92823 * 180.02562 * 23 20 19 38 38 H 1.07995 * 120.06782 * 180.02562 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5001 -0.8264 -1.1905 6 6 4.1840 -1.4379 -2.2071 7 1 3.6470 -1.8424 -3.0524 8 6 5.5674 -1.5380 -2.1513 9 7 6.2217 -1.0455 -1.1210 10 14 6.5003 -2.3716 -3.5384 11 1 6.8631 -1.3636 -4.5668 12 1 7.7354 -2.9955 -2.9995 13 1 5.6440 -3.4184 -4.1518 14 7 2.0184 -0.6907 1.1962 15 6 2.1470 -0.0182 2.3572 16 8 1.8584 1.1612 2.4117 17 6 2.6403 -0.7151 3.5642 18 6 2.7752 -0.0216 4.7679 19 6 3.2305 -0.6792 5.8919 20 6 3.5589 -2.0217 5.8264 21 6 4.0551 -2.7336 7.0584 22 9 2.9682 -3.2727 7.7551 23 6 3.4326 -2.7137 4.6350 24 6 2.9774 -2.0682 3.5038 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.6054 -1.7198 -1.2952 29 1 1.7517 -0.1583 -2.1370 30 1 3.9825 -0.4628 -0.4315 31 1 7.1884 -1.1151 -1.0821 32 1 2.2490 -1.6318 1.1526 33 1 2.5190 1.0263 4.8206 34 1 3.3314 -0.1448 6.8251 35 1 4.7332 -3.5355 6.7663 36 1 4.5828 -2.0268 7.6988 37 1 3.6902 -3.7615 4.5906 38 1 2.8789 -2.6095 2.5745 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715963708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:30:39 Heat of formation + Delta-G solvation = -78.301723 kcal Electronic energy + Delta-G solvation = -21197.278672 eV Core-core repulsion = 17760.067218 eV Total energy + Delta-G solvation = -3437.211454 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -48.58803 -41.33729 -39.59313 -37.69564 -35.51248 -33.84730 -32.82360 -32.07034 -31.29248 -27.83283 -27.41579 -24.66012 -23.81919 -23.75830 -22.07568 -21.32296 -19.43713 -18.83014 -17.66036 -17.21618 -16.79623 -16.79408 -16.67076 -16.18086 -15.85646 -15.50318 -15.30195 -15.23309 -14.97983 -14.49681 -14.15077 -13.85945 -13.72655 -13.65823 -13.36974 -13.07808 -12.79991 -12.64499 -12.31600 -12.16235 -12.09013 -11.91262 -11.82633 -11.71094 -11.08750 -10.94063 -10.23971 -10.02994 -9.91316 -9.02640 -7.94617 -5.24885 -0.30405 0.33616 1.48590 1.50060 1.58358 1.75816 2.14580 2.56030 2.77852 3.39452 3.42280 3.67929 3.69416 3.85812 3.91450 4.02509 4.12292 4.14191 4.27464 4.35787 4.48724 4.53705 4.66112 4.77492 4.81899 4.85211 4.91705 4.96941 5.07998 5.19893 5.28372 5.30057 5.38100 5.49903 5.53424 5.81285 6.25640 6.49767 7.14555 7.33005 8.05725 8.29804 9.28421 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.015093 B = 0.004326 C = 0.003600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.777180 B = 6470.376399 C = 7776.529942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.138 3.862 3 H 0.061 0.939 4 C 0.145 3.855 5 N -0.745 5.745 6 C -0.246 4.246 7 H 0.080 0.920 8 C -0.072 4.072 9 N -0.968 5.968 10 Si 0.973 3.027 11 H -0.291 1.291 12 H -0.296 1.296 13 H -0.266 1.266 14 N -0.700 5.700 15 C 0.553 3.447 16 O -0.581 6.581 17 C -0.142 4.142 18 C -0.078 4.078 19 C -0.106 4.106 20 C -0.116 4.116 21 C 0.103 3.897 22 F -0.226 7.226 23 C -0.107 4.107 24 C -0.089 4.089 25 H 0.073 0.927 26 H 0.050 0.950 27 H 0.083 0.917 28 H 0.042 0.958 29 H 0.041 0.959 30 H 0.373 0.627 31 H 0.250 0.750 32 H 0.408 0.592 33 H 0.132 0.868 34 H 0.159 0.841 35 H 0.108 0.892 36 H 0.111 0.889 37 H 0.155 0.845 38 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.826 -4.547 14.864 17.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.033 3.967 3 H 0.079 0.921 4 C 0.019 3.981 5 N -0.388 5.388 6 C -0.378 4.378 7 H 0.098 0.902 8 C -0.264 4.264 9 N -0.619 5.619 10 Si 0.802 3.198 11 H -0.218 1.218 12 H -0.223 1.223 13 H -0.191 1.191 14 N -0.351 5.351 15 C 0.341 3.659 16 O -0.463 6.463 17 C -0.145 4.145 18 C -0.096 4.096 19 C -0.123 4.123 20 C -0.117 4.117 21 C 0.049 3.951 22 F -0.207 7.207 23 C -0.125 4.125 24 C -0.108 4.108 25 H 0.092 0.908 26 H 0.069 0.931 27 H 0.102 0.898 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.205 0.795 31 H 0.059 0.941 32 H 0.245 0.755 33 H 0.150 0.850 34 H 0.176 0.824 35 H 0.126 0.874 36 H 0.129 0.871 37 H 0.173 0.827 38 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -8.071 -3.842 14.702 17.206 hybrid contribution 0.961 -0.316 -0.758 1.264 sum -7.110 -4.158 13.944 16.195 Atomic orbital electron populations 1.22008 0.92472 1.03228 1.02749 1.21177 0.95527 0.96237 0.83762 0.92119 1.21142 0.84072 0.98099 0.94815 1.42555 1.01833 1.70082 1.24329 1.19650 0.89925 1.28552 0.99655 0.90201 1.25549 0.97488 1.02946 1.00430 1.69833 1.07030 1.52783 1.32236 0.85147 0.77958 0.78125 0.78531 1.21832 1.22312 1.19092 1.45902 1.65723 1.14565 1.08916 1.18661 0.77014 0.86162 0.84047 1.90698 1.52779 1.16945 1.85871 1.20067 1.04967 0.95342 0.94085 1.21367 0.96331 1.00500 0.91450 1.21323 0.97957 0.94187 0.98862 1.20782 0.99714 0.94809 0.96362 1.21079 0.85433 0.99202 0.89393 1.92786 1.59095 1.88102 1.80730 1.21332 0.98311 1.01325 0.91513 1.21512 0.96541 0.92939 0.99815 0.90781 0.93051 0.89833 0.93980 0.94149 0.79465 0.94092 0.75479 0.85017 0.82363 0.87392 0.87120 0.82695 0.84604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.85 9.48 71.98 0.68 -3.17 16 2 C 0.14 4.68 2.73 44.99 0.12 4.81 16 3 H 0.06 2.41 7.58 -2.39 -0.02 2.39 16 4 C 0.15 5.49 5.82 86.38 0.50 6.00 16 5 N -0.74 -36.77 5.43 -343.45 -1.87 -38.64 16 6 C -0.25 -13.33 9.99 84.03 0.84 -12.49 16 7 H 0.08 4.10 7.83 -2.91 -0.02 4.07 16 8 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 9 N -0.97 -58.63 13.06 21.65 0.28 -58.35 16 10 Si 0.97 45.15 29.55 68.60 2.03 47.18 16 11 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 12 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 13 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 14 N -0.70 -23.45 4.47 -445.39 -1.99 -25.44 16 15 C 0.55 19.78 7.74 86.79 0.67 20.46 16 16 O -0.58 -24.27 16.01 -3.87 -0.06 -24.33 16 17 C -0.14 -4.28 5.87 -20.09 -0.12 -4.40 16 18 C -0.08 -2.08 9.60 22.53 0.22 -1.86 16 19 C -0.11 -2.16 9.68 22.23 0.22 -1.94 16 20 C -0.12 -2.21 5.60 -19.81 -0.11 -2.32 16 21 C 0.10 1.36 7.67 71.23 0.55 1.90 16 22 F -0.23 -4.27 17.34 44.97 0.78 -3.49 16 23 C -0.11 -2.24 9.68 22.23 0.22 -2.02 16 24 C -0.09 -2.30 9.54 22.53 0.21 -2.09 16 25 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.04 1.51 8.14 -2.38 -0.02 1.49 16 30 H 0.37 20.17 7.33 -92.71 -0.68 19.49 16 31 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 32 H 0.41 12.68 6.64 -92.71 -0.62 12.06 16 33 H 0.13 3.59 7.65 -2.91 -0.02 3.57 16 34 H 0.16 2.23 8.06 -2.91 -0.02 2.21 16 35 H 0.11 0.98 8.08 -2.39 -0.02 0.96 16 36 H 0.11 0.92 8.08 -2.38 -0.02 0.90 16 37 H 0.16 2.41 8.06 -2.91 -0.02 2.39 16 38 H 0.14 3.28 6.41 -2.91 -0.02 3.26 16 Total: -1.00 -70.70 330.83 3.43 -67.27 By element: Atomic # 1 Polarization: 36.69 SS G_CDS: -0.21 Total: 36.48 kcal Atomic # 6 Polarization: -5.16 SS G_CDS: 4.47 Total: -0.69 kcal Atomic # 7 Polarization: -118.85 SS G_CDS: -3.57 Total: -122.42 kcal Atomic # 8 Polarization: -24.27 SS G_CDS: -0.06 Total: -24.33 kcal Atomic # 9 Polarization: -4.27 SS G_CDS: 0.78 Total: -3.49 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -70.70 3.43 -67.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715963708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.030 kcal (2) G-P(sol) polarization free energy of solvation -70.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds