Wall clock time and date at job start Tue Mar 31 2020 02:28:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09003 * 109.47153 * 2 1 4 4 C 1.52993 * 109.47024 * 240.00139 * 2 1 3 5 5 N 1.46500 * 109.47168 * 184.99939 * 4 2 1 6 6 C 1.46503 * 120.00136 * 270.00027 * 5 4 2 7 7 C 1.36935 * 120.00343 * 89.99979 * 5 4 2 8 8 H 1.08009 * 119.99702 * 22.35675 * 7 5 4 9 9 C 1.38807 * 120.00153 * 202.35852 * 7 5 4 10 10 N 1.31618 * 120.00405 * 11.25278 * 9 7 5 11 11 Si 1.86804 * 119.99855 * 191.25292 * 9 7 5 12 12 H 1.48500 * 109.47197 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.47247 * 119.99945 * 11 9 7 14 14 H 1.48508 * 109.46936 * 239.99917 * 11 9 7 15 15 N 1.46498 * 109.47249 * 119.99794 * 2 1 3 16 16 C 1.34774 * 120.00479 * 275.00415 * 15 2 1 17 17 O 1.21568 * 119.99912 * 359.97438 * 16 15 2 18 18 C 1.47723 * 120.00068 * 179.97438 * 16 15 2 19 19 C 1.39645 * 120.12077 * 359.72643 * 18 16 15 20 20 C 1.37834 * 119.88288 * 179.74197 * 19 18 16 21 21 C 1.38657 * 120.11612 * 0.50871 * 20 19 18 22 22 F 1.35101 * 119.88437 * 179.74345 * 21 20 19 23 23 C 1.38661 * 120.23861 * 359.76126 * 21 20 19 24 24 C 1.37837 * 120.12014 * 359.97438 * 23 21 20 25 25 H 1.08998 * 109.46896 * 59.99529 * 1 2 3 26 26 H 1.09000 * 109.47060 * 299.99956 * 1 2 3 27 27 H 1.08995 * 109.46820 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47121 * 304.99749 * 4 2 1 29 29 H 1.09002 * 109.47372 * 64.99757 * 4 2 1 30 30 H 1.09002 * 109.47124 * 94.23793 * 6 5 4 31 31 H 1.08996 * 109.47439 * 214.23796 * 6 5 4 32 32 H 1.09004 * 109.46769 * 334.23939 * 6 5 4 33 33 H 0.96995 * 120.00195 * 179.97438 * 10 9 7 34 34 H 0.97002 * 119.99593 * 94.99519 * 15 2 1 35 35 H 1.08001 * 120.05703 * 359.97079 * 19 18 16 36 36 H 1.07996 * 119.94860 * 180.25077 * 20 19 18 37 37 H 1.08004 * 119.94091 * 179.97438 * 23 21 20 38 38 H 1.07998 * 120.06159 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5001 -0.8263 -1.1906 6 6 4.3344 0.2341 -1.7613 7 6 4.0851 -1.9158 -0.6024 8 1 3.5340 -2.8400 -0.5090 9 6 5.3862 -1.8323 -0.1261 10 7 5.9800 -0.6612 -0.0352 11 14 6.2946 -3.3823 0.3858 12 1 5.4128 -4.5608 0.1889 13 1 7.5181 -3.5352 -0.4417 14 1 6.6749 -3.2830 1.8180 15 7 2.0184 -0.6905 1.1962 16 6 2.1471 -0.0183 2.3572 17 8 1.8584 1.1613 2.4117 18 6 2.6390 -0.7148 3.5634 19 6 2.9660 -2.0712 3.5050 20 6 3.4296 -2.7150 4.6322 21 6 3.5615 -2.0208 5.8252 22 9 4.0115 -2.6577 6.9284 23 6 3.2329 -0.6752 5.8901 24 6 2.7736 -0.0204 4.7676 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.6054 -1.7198 -1.2951 29 1 1.7517 -0.1583 -2.1370 30 1 4.6025 0.9455 -0.9801 31 1 5.2403 -0.2027 -2.1814 32 1 3.7810 0.7486 -2.5469 33 1 6.8891 -0.6029 0.2980 34 1 2.2491 -1.6317 1.1526 35 1 2.8594 -2.6139 2.5774 36 1 3.6867 -3.7629 4.5872 37 1 3.3371 -0.1393 6.8220 38 1 2.5175 1.0275 4.8194 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716009744.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:28:08 Heat of formation + Delta-G solvation = -35.327786 kcal Electronic energy + Delta-G solvation = -22357.275652 eV Core-core repulsion = 18921.927688 eV Total energy + Delta-G solvation = -3435.347964 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -48.90261 -39.75617 -37.94551 -36.25097 -34.02956 -31.85781 -30.95637 -30.68856 -29.39857 -26.20122 -25.64397 -23.75360 -22.87739 -21.75924 -20.46110 -19.71922 -17.92688 -17.20138 -16.61032 -16.30128 -15.58529 -15.28775 -14.96208 -14.74394 -14.33173 -13.76487 -13.72263 -13.47213 -13.20705 -13.05506 -12.82197 -12.54528 -12.19329 -12.10019 -11.78244 -11.42746 -11.31422 -10.95408 -10.90352 -10.74219 -10.42456 -10.27651 -10.06865 -9.88077 -9.36871 -9.07475 -8.66922 -8.62120 -8.26648 -6.82270 -5.78797 -3.25338 0.89237 1.32255 3.15134 3.28935 3.35970 3.39690 3.77727 4.10889 4.24608 4.40898 4.77311 4.90351 5.12842 5.30609 5.33302 5.40902 5.48256 5.63278 5.84951 5.93295 5.96151 5.98503 6.13707 6.14171 6.22178 6.27727 6.40238 6.44660 6.52895 6.72884 6.85923 6.88266 7.23376 7.35858 7.65783 7.76905 8.23466 8.31867 8.86531 9.15599 9.79797 10.30082 11.25200 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.013357 B = 0.007562 C = 0.005420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2095.852264 B = 3701.954209 C = 5164.875371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.117 3.883 3 H 0.078 0.922 4 C 0.142 3.858 5 N -0.599 5.599 6 C 0.164 3.836 7 C -0.260 4.260 8 H 0.066 0.934 9 C 0.010 3.990 10 N -0.896 5.896 11 Si 0.891 3.109 12 H -0.277 1.277 13 H -0.289 1.289 14 H -0.288 1.288 15 N -0.680 5.680 16 C 0.560 3.440 17 O -0.558 6.558 18 C -0.129 4.129 19 C -0.048 4.048 20 C -0.161 4.161 21 C 0.112 3.888 22 F -0.141 7.141 23 C -0.166 4.166 24 C -0.037 4.037 25 H 0.059 0.941 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.048 0.952 29 H 0.053 0.947 30 H 0.028 0.972 31 H 0.044 0.956 32 H -0.004 1.004 33 H 0.252 0.748 34 H 0.403 0.597 35 H 0.140 0.860 36 H 0.139 0.861 37 H 0.138 0.862 38 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.982 -2.389 6.330 10.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.010 3.990 3 H 0.096 0.904 4 C 0.013 3.987 5 N -0.321 5.321 6 C 0.019 3.981 7 C -0.390 4.390 8 H 0.084 0.916 9 C -0.190 4.190 10 N -0.540 5.540 11 Si 0.720 3.280 12 H -0.202 1.202 13 H -0.216 1.216 14 H -0.215 1.215 15 N -0.329 5.329 16 C 0.347 3.653 17 O -0.438 6.438 18 C -0.132 4.132 19 C -0.067 4.067 20 C -0.180 4.180 21 C 0.092 3.908 22 F -0.119 7.119 23 C -0.185 4.185 24 C -0.056 4.056 25 H 0.078 0.922 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.046 0.954 31 H 0.063 0.937 32 H 0.014 0.986 33 H 0.063 0.937 34 H 0.240 0.760 35 H 0.158 0.842 36 H 0.156 0.844 37 H 0.156 0.844 38 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -7.970 -1.554 6.383 10.329 hybrid contribution 1.068 -1.362 0.570 1.822 sum -6.903 -2.916 6.953 10.222 Atomic orbital electron populations 1.22159 0.96770 1.01299 1.01635 1.21872 0.91854 0.98492 0.86823 0.90378 1.21197 0.85987 0.97901 0.93602 1.43890 0.98880 1.22649 1.66659 1.20800 0.92964 0.90459 0.93860 1.19091 0.97233 0.89417 1.33224 0.91602 1.24988 0.98607 0.96061 0.99323 1.70068 1.13316 1.21519 1.49063 0.86408 0.80334 0.83017 0.78208 1.20189 1.21561 1.21501 1.45648 1.64464 1.14325 1.08462 1.17977 0.77727 0.86345 0.83287 1.90698 1.52097 1.15518 1.85508 1.20176 1.03840 0.94239 0.94958 1.21290 0.93787 0.93555 0.98034 1.21069 1.03831 1.01390 0.91724 1.17931 0.98566 0.91172 0.83097 1.91488 1.86645 1.82109 1.51706 1.21051 1.04051 0.92961 1.00389 1.21109 0.93772 1.00450 0.90220 0.92171 0.92897 0.92991 0.93331 0.92860 0.95378 0.93702 0.98551 0.93736 0.76021 0.84182 0.84362 0.84427 0.83861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.34 9.48 37.16 0.35 -1.99 16 2 C 0.12 2.14 2.88 -67.93 -0.20 1.95 16 3 H 0.08 1.65 7.58 -51.93 -0.39 1.26 16 4 C 0.14 2.64 5.36 -4.04 -0.02 2.61 16 5 N -0.60 -13.87 2.82 -181.12 -0.51 -14.38 16 6 C 0.16 3.93 9.01 59.85 0.54 4.47 16 7 C -0.26 -6.39 8.02 -15.06 -0.12 -6.51 16 8 H 0.07 1.55 7.84 -52.48 -0.41 1.14 16 9 C 0.01 0.26 5.13 -17.43 -0.09 0.17 16 10 N -0.90 -25.00 10.58 55.49 0.59 -24.41 16 11 Si 0.89 20.46 29.57 -169.99 -5.03 15.43 16 12 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 13 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 14 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 15 N -0.68 -12.81 4.44 -54.79 -0.24 -13.06 16 16 C 0.56 11.10 7.73 -12.39 -0.10 11.01 16 17 O -0.56 -12.45 16.01 5.31 0.08 -12.36 16 18 C -0.13 -2.23 5.87 -104.97 -0.62 -2.85 16 19 C -0.05 -0.75 9.54 -39.20 -0.37 -1.13 16 20 C -0.16 -2.32 10.01 -39.57 -0.40 -2.71 16 21 C 0.11 1.59 7.31 -39.27 -0.29 1.31 16 22 F -0.14 -1.97 17.26 2.25 0.04 -1.93 16 23 C -0.17 -2.25 10.01 -39.57 -0.40 -2.65 16 24 C -0.04 -0.56 9.59 -39.20 -0.38 -0.94 16 25 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.05 0.85 8.03 -51.93 -0.42 0.43 16 29 H 0.05 0.91 7.86 -51.93 -0.41 0.50 16 30 H 0.03 0.75 7.42 -51.93 -0.39 0.36 16 31 H 0.04 1.16 7.19 -51.93 -0.37 0.78 16 32 H 0.00 -0.09 7.84 -51.93 -0.41 -0.49 16 33 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 34 H 0.40 7.32 5.43 -40.82 -0.22 7.10 16 35 H 0.14 2.09 6.40 -52.49 -0.34 1.76 16 36 H 0.14 1.70 8.06 -52.49 -0.42 1.27 16 37 H 0.14 1.49 8.06 -52.48 -0.42 1.07 16 38 H 0.14 2.12 7.65 -52.49 -0.40 1.72 16 LS Contribution 324.03 15.07 4.88 4.88 Total: -1.00 -29.75 324.03 -7.27 -37.02 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -5.00 Total: 6.08 kcal Atomic # 6 Polarization: 4.81 SS G_CDS: -2.08 Total: 2.73 kcal Atomic # 7 Polarization: -51.68 SS G_CDS: -0.17 Total: -51.85 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: 0.08 Total: -12.36 kcal Atomic # 9 Polarization: -1.97 SS G_CDS: 0.04 Total: -1.93 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.03 Total: 15.43 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.75 -7.27 -37.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716009744.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.687 kcal (2) G-P(sol) polarization free energy of solvation -29.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds