Wall clock time and date at job start Tue Mar 31 2020 02:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.28726 * 125.31757 * 2 1 4 4 N 1.28976 * 108.98337 * 179.69182 * 3 2 1 5 5 C 1.34181 * 107.25754 * 0.43043 * 4 3 2 6 6 C 1.48003 * 126.70398 * 179.83725 * 5 4 3 7 7 O 1.21533 * 120.00184 * 179.68532 * 6 5 4 8 8 N 1.34783 * 119.99868 * 359.69174 * 6 5 4 9 9 C 1.46496 * 120.00198 * 179.97438 * 8 6 5 10 10 H 1.09002 * 109.46653 * 35.00100 * 9 8 6 11 11 C 1.52997 * 109.47035 * 154.99692 * 9 8 6 12 12 N 1.46497 * 109.47371 * 305.00232 * 11 9 8 13 13 C 1.36938 * 120.00225 * 179.97438 * 12 11 9 14 14 H 1.08002 * 119.99654 * 359.97438 * 13 12 11 15 15 C 1.38811 * 120.00185 * 180.02562 * 13 12 11 16 16 N 1.31617 * 120.00080 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 119.99940 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47532 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47461 * 119.99572 * 17 15 13 20 20 H 1.48509 * 109.47144 * 239.99299 * 17 15 13 21 21 C 1.52996 * 109.47477 * 275.00153 * 9 8 6 22 22 C 1.53002 * 117.49888 * 356.25271 * 21 9 8 23 23 C 1.53000 * 117.50107 * 64.91033 * 21 9 8 24 24 N 1.28862 * 125.32280 * 179.97438 * 2 1 3 25 25 H 1.08994 * 109.46937 * 270.03866 * 1 2 3 26 26 H 1.08996 * 109.47130 * 30.04390 * 1 2 3 27 27 H 1.09000 * 109.46462 * 150.03734 * 1 2 3 28 28 H 0.97000 * 119.99550 * 359.97438 * 8 6 5 29 29 H 1.08995 * 109.47084 * 65.00455 * 11 9 8 30 30 H 1.09003 * 109.47102 * 185.00047 * 11 9 8 31 31 H 0.96997 * 120.00193 * 0.02562 * 12 11 9 32 32 H 0.96996 * 120.00274 * 180.02562 * 16 15 13 33 33 H 1.09002 * 115.54951 * 210.58245 * 21 9 8 34 34 H 1.09000 * 117.49996 * 215.00804 * 22 21 9 35 35 H 1.08999 * 117.49664 * 0.02562 * 22 21 9 36 36 H 1.09008 * 117.49673 * 359.97438 * 23 21 9 37 37 H 1.08999 * 117.49959 * 144.99502 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2092 1.0504 0.0000 4 7 3.4469 0.6876 0.0066 5 6 3.4686 -0.6540 0.0012 6 6 4.6693 -1.5193 0.0021 7 8 4.5470 -2.7285 0.0025 8 7 5.8985 -0.9663 0.0026 9 6 7.0870 -1.8228 0.0040 10 1 6.8900 -2.7186 -0.5850 11 6 8.2654 -1.0607 -0.6054 12 7 7.8968 -0.5754 -1.9376 13 6 8.7986 0.1395 -2.6797 14 1 9.7816 0.3458 -2.2827 15 6 8.4491 0.5998 -3.9418 16 7 7.2510 0.3487 -4.4254 17 14 9.6796 1.5743 -4.9544 18 1 10.9451 1.7188 -4.1909 19 1 9.9485 0.8601 -6.2283 20 1 9.1234 2.9195 -5.2490 21 6 7.4263 -2.2220 1.4415 22 6 6.5755 -1.6198 2.5614 23 6 6.4172 -3.0960 2.1889 24 7 2.2101 -1.0514 0.0005 25 1 -0.3633 0.0007 1.0276 26 1 -0.3633 0.8896 -0.5145 27 1 -0.3632 -0.8904 -0.5133 28 1 5.9961 -0.0013 0.0019 29 1 8.5194 -0.2141 0.0323 30 1 9.1254 -1.7256 -0.6861 31 1 7.0136 -0.7598 -2.2937 32 1 7.0069 0.6700 -5.3074 33 1 8.4841 -2.3871 1.6463 34 1 7.0735 -1.3886 3.5031 35 1 5.7737 -0.9396 2.2741 36 1 5.5113 -3.3863 1.6566 37 1 6.8111 -3.8362 2.8854 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001723321961.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:15 Heat of formation + Delta-G solvation = 144.760101 kcal Electronic energy + Delta-G solvation = -21957.104164 eV Core-core repulsion = 18581.778110 eV Total energy + Delta-G solvation = -3375.326054 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.139 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -44.42592 -39.99129 -37.17566 -35.33088 -34.89985 -33.33077 -33.18816 -31.21005 -29.19035 -28.06943 -25.20935 -23.99491 -23.07476 -22.22021 -21.50299 -21.25990 -19.74014 -18.43159 -17.68482 -17.25209 -16.71832 -16.05596 -15.87494 -14.90164 -14.38106 -14.18071 -14.06692 -13.85742 -13.47707 -13.36034 -13.22887 -12.85286 -12.19768 -12.13109 -11.69057 -11.38613 -11.23889 -11.17286 -11.12054 -10.87867 -10.81602 -10.40554 -10.30992 -10.11332 -9.94013 -9.77785 -9.59341 -8.90686 -8.78002 -6.94006 -5.75208 -3.05291 0.95510 1.49431 1.67017 2.95123 3.23600 3.45100 3.50431 3.52902 3.99718 4.00787 4.16618 4.53686 4.57916 4.76656 4.85035 4.90729 5.16896 5.19707 5.23744 5.50121 5.57245 5.59012 5.73864 5.85595 5.88418 5.97571 6.01961 6.22742 6.31542 6.43482 6.50285 6.66441 6.83870 7.61051 7.71427 8.11745 8.27849 8.42087 9.54097 10.09211 10.44124 11.47221 Molecular weight = 280.14amu Principal moments of inertia in cm(-1) A = 0.013717 B = 0.005490 C = 0.004179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.820265 B = 5099.218339 C = 6699.028159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.139 5.139 3 N -0.057 5.057 4 N -0.244 5.244 5 C 0.135 3.865 6 C 0.617 3.383 7 O -0.512 6.512 8 N -0.682 5.682 9 C 0.169 3.831 10 H 0.097 0.903 11 C 0.148 3.852 12 N -0.732 5.732 13 C -0.241 4.241 14 H 0.072 0.928 15 C -0.011 4.011 16 N -0.930 5.930 17 Si 0.907 3.093 18 H -0.280 1.280 19 H -0.292 1.292 20 H -0.292 1.292 21 C -0.160 4.160 22 C -0.178 4.178 23 C -0.186 4.186 24 N -0.251 5.251 25 H 0.103 0.897 26 H 0.115 0.885 27 H 0.113 0.887 28 H 0.416 0.584 29 H 0.029 0.971 30 H 0.039 0.961 31 H 0.386 0.614 32 H 0.254 0.746 33 H 0.114 0.886 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.115 0.885 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.005 -2.181 13.501 18.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.052 5.052 3 N -0.051 5.051 4 N -0.119 5.119 5 C -0.149 4.149 6 C 0.397 3.603 7 O -0.385 6.385 8 N -0.334 5.334 9 C 0.065 3.935 10 H 0.115 0.885 11 C 0.020 3.980 12 N -0.377 5.377 13 C -0.373 4.373 14 H 0.090 0.910 15 C -0.208 4.208 16 N -0.579 5.579 17 Si 0.738 3.262 18 H -0.205 1.205 19 H -0.219 1.219 20 H -0.219 1.219 21 C -0.180 4.180 22 C -0.215 4.215 23 C -0.223 4.223 24 N -0.105 5.105 25 H 0.122 0.878 26 H 0.134 0.866 27 H 0.131 0.869 28 H 0.253 0.747 29 H 0.047 0.953 30 H 0.056 0.944 31 H 0.220 0.780 32 H 0.064 0.936 33 H 0.132 0.868 34 H 0.107 0.893 35 H 0.108 0.892 36 H 0.133 0.867 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -12.293 -2.451 13.439 18.377 hybrid contribution 0.471 0.646 -0.803 1.133 sum -11.822 -1.805 12.636 17.398 Atomic orbital electron populations 1.22506 0.68728 1.07211 1.06168 1.50237 1.11029 1.00799 1.43127 1.78946 0.96464 1.13985 1.15726 1.76199 1.09818 1.10142 1.15710 1.25369 0.93184 0.90350 1.06001 1.16071 0.80875 0.85690 0.77653 1.90762 1.85562 1.12703 1.49476 1.45739 1.03923 1.11892 1.71835 1.20926 0.84246 0.94410 0.93950 0.88547 1.20938 0.93177 0.95838 0.88053 1.42355 1.16485 1.65258 1.13612 1.19248 0.95099 1.25994 0.96911 0.90972 1.24748 0.96817 1.01471 0.97720 1.69680 1.19116 1.50790 1.18283 0.86117 0.80307 0.79512 0.80220 1.20508 1.21921 1.21888 1.22715 0.97513 1.05151 0.92637 1.22905 1.03095 0.96800 0.98700 1.23326 1.02546 0.93065 1.03344 1.75053 1.02492 1.14309 1.18612 0.87812 0.86639 0.86857 0.74683 0.95277 0.94372 0.78027 0.93573 0.86809 0.89252 0.89224 0.86738 0.89476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.48 11.62 59.85 0.70 1.18 16 2 N -0.14 -1.69 4.39 -16.65 -0.07 -1.77 16 3 N -0.06 -0.84 13.23 60.35 0.80 -0.04 16 4 N -0.24 -4.12 12.26 32.10 0.39 -3.73 16 5 C 0.14 2.31 8.14 -156.25 -1.27 1.04 16 6 C 0.62 11.03 6.52 -12.25 -0.08 10.95 16 7 O -0.51 -9.96 14.08 5.34 0.08 -9.89 16 8 N -0.68 -11.66 3.17 -54.70 -0.17 -11.83 16 9 C 0.17 2.85 2.57 -67.94 -0.17 2.68 16 10 H 0.10 1.79 7.58 -51.93 -0.39 1.40 16 11 C 0.15 2.86 5.78 -4.04 -0.02 2.84 16 12 N -0.73 -18.23 5.43 -59.91 -0.33 -18.55 16 13 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 14 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 15 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 16 N -0.93 -28.43 13.06 55.49 0.72 -27.70 16 17 Si 0.91 22.48 29.55 -169.99 -5.02 17.45 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 20 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 21 C -0.16 -2.26 5.73 -90.62 -0.52 -2.78 16 22 C -0.18 -2.35 9.69 -26.69 -0.26 -2.61 16 23 C -0.19 -2.56 9.85 -26.70 -0.26 -2.83 16 24 N -0.25 -3.85 12.17 32.11 0.39 -3.45 16 25 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.12 0.35 8.14 -51.93 -0.42 -0.08 16 27 H 0.11 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.42 7.19 8.35 -40.82 -0.34 6.85 16 29 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.39 10.33 7.33 -40.82 -0.30 10.03 16 32 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 33 H 0.11 1.43 8.08 -51.93 -0.42 1.01 16 34 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.09 1.27 6.41 -51.93 -0.33 0.94 16 36 H 0.11 1.84 5.25 -51.92 -0.27 1.57 16 37 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 320.18 15.07 4.83 4.83 Total: -1.00 -34.48 320.18 -5.09 -39.57 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: -4.56 Total: 11.91 kcal Atomic # 6 Polarization: 5.34 SS G_CDS: -2.14 Total: 3.20 kcal Atomic # 7 Polarization: -68.81 SS G_CDS: 1.73 Total: -67.07 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.08 Total: -9.89 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -34.48 -5.09 -39.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723321961.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.330 kcal (2) G-P(sol) polarization free energy of solvation -34.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds