Wall clock time and date at job start Tue Mar 31 2020 02:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.28726 * 125.31757 * 2 1 4 4 N 1.28976 * 108.98337 * 179.69182 * 3 2 1 5 5 C 1.34181 * 107.25754 * 0.43043 * 4 3 2 6 6 C 1.48003 * 126.70398 * 179.83725 * 5 4 3 7 7 O 1.21533 * 120.00184 * 179.68532 * 6 5 4 8 8 N 1.34783 * 119.99868 * 359.69174 * 6 5 4 9 9 C 1.46496 * 120.00198 * 179.97438 * 8 6 5 10 10 H 1.09002 * 109.46653 * 35.00100 * 9 8 6 11 11 C 1.52997 * 109.47035 * 154.99692 * 9 8 6 12 12 N 1.46497 * 109.47371 * 305.00232 * 11 9 8 13 13 C 1.36938 * 120.00225 * 179.97438 * 12 11 9 14 14 H 1.08002 * 119.99654 * 359.97438 * 13 12 11 15 15 C 1.38811 * 120.00185 * 180.02562 * 13 12 11 16 16 N 1.31617 * 120.00080 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 119.99940 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47532 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47461 * 119.99572 * 17 15 13 20 20 H 1.48509 * 109.47144 * 239.99299 * 17 15 13 21 21 C 1.52996 * 109.47477 * 275.00153 * 9 8 6 22 22 C 1.53002 * 117.49888 * 356.25271 * 21 9 8 23 23 C 1.53000 * 117.50107 * 64.91033 * 21 9 8 24 24 N 1.28862 * 125.32280 * 179.97438 * 2 1 3 25 25 H 1.08994 * 109.46937 * 270.03866 * 1 2 3 26 26 H 1.08996 * 109.47130 * 30.04390 * 1 2 3 27 27 H 1.09000 * 109.46462 * 150.03734 * 1 2 3 28 28 H 0.97000 * 119.99550 * 359.97438 * 8 6 5 29 29 H 1.08995 * 109.47084 * 65.00455 * 11 9 8 30 30 H 1.09003 * 109.47102 * 185.00047 * 11 9 8 31 31 H 0.96997 * 120.00193 * 0.02562 * 12 11 9 32 32 H 0.96996 * 120.00274 * 180.02562 * 16 15 13 33 33 H 1.09002 * 115.54951 * 210.58245 * 21 9 8 34 34 H 1.09000 * 117.49996 * 215.00804 * 22 21 9 35 35 H 1.08999 * 117.49664 * 0.02562 * 22 21 9 36 36 H 1.09008 * 117.49673 * 359.97438 * 23 21 9 37 37 H 1.08999 * 117.49959 * 144.99502 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2092 1.0504 0.0000 4 7 3.4469 0.6876 0.0066 5 6 3.4686 -0.6540 0.0012 6 6 4.6693 -1.5193 0.0021 7 8 4.5470 -2.7285 0.0025 8 7 5.8985 -0.9663 0.0026 9 6 7.0870 -1.8228 0.0040 10 1 6.8900 -2.7186 -0.5850 11 6 8.2654 -1.0607 -0.6054 12 7 7.8968 -0.5754 -1.9376 13 6 8.7986 0.1395 -2.6797 14 1 9.7816 0.3458 -2.2827 15 6 8.4491 0.5998 -3.9418 16 7 7.2510 0.3487 -4.4254 17 14 9.6796 1.5743 -4.9544 18 1 10.9451 1.7188 -4.1909 19 1 9.9485 0.8601 -6.2283 20 1 9.1234 2.9195 -5.2490 21 6 7.4263 -2.2220 1.4415 22 6 6.5755 -1.6198 2.5614 23 6 6.4172 -3.0960 2.1889 24 7 2.2101 -1.0514 0.0005 25 1 -0.3633 0.0007 1.0276 26 1 -0.3633 0.8896 -0.5145 27 1 -0.3632 -0.8904 -0.5133 28 1 5.9961 -0.0013 0.0019 29 1 8.5194 -0.2141 0.0323 30 1 9.1254 -1.7256 -0.6861 31 1 7.0136 -0.7598 -2.2937 32 1 7.0069 0.6700 -5.3074 33 1 8.4841 -2.3871 1.6463 34 1 7.0735 -1.3886 3.5031 35 1 5.7737 -0.9396 2.2741 36 1 5.5113 -3.3863 1.6566 37 1 6.8111 -3.8362 2.8854 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001723321961.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:14 Heat of formation + Delta-G solvation = 118.755758 kcal Electronic energy + Delta-G solvation = -21958.231797 eV Core-core repulsion = 18581.778110 eV Total energy + Delta-G solvation = -3376.453687 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.139 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -45.55824 -41.34767 -38.49093 -36.57127 -36.33388 -34.89720 -34.34715 -33.07704 -30.37976 -29.35767 -26.57803 -25.78485 -24.10162 -23.44369 -22.99697 -22.52663 -21.02646 -19.73065 -19.08710 -18.73785 -17.83922 -17.41965 -17.23374 -16.65413 -15.85146 -15.38613 -15.25742 -15.22564 -15.06922 -14.54022 -14.23176 -14.13384 -13.70327 -13.18887 -13.13504 -12.87886 -12.76493 -12.67556 -12.37892 -12.34458 -12.24416 -12.02657 -11.82992 -11.62972 -11.45867 -11.14775 -10.97964 -10.82863 -10.15912 -8.99812 -7.92679 -5.22260 -0.19178 0.24498 0.81226 1.49690 1.50208 1.60395 1.72208 1.89506 2.57365 2.78085 2.93694 3.07446 3.42816 3.60719 3.91294 3.99175 4.04938 4.08163 4.18610 4.22507 4.38805 4.49050 4.50142 4.58240 4.61871 4.82216 4.87276 4.97480 5.06271 5.11507 5.25855 5.37499 5.41778 5.53773 6.22533 6.27785 6.82885 7.01649 7.35123 8.08334 8.31223 9.30977 Molecular weight = 280.14amu Principal moments of inertia in cm(-1) A = 0.013717 B = 0.005490 C = 0.004179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.820265 B = 5099.218339 C = 6699.028159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.115 5.115 3 N -0.063 5.063 4 N -0.269 5.269 5 C 0.115 3.885 6 C 0.617 3.383 7 O -0.535 6.535 8 N -0.679 5.679 9 C 0.176 3.824 10 H 0.075 0.925 11 C 0.149 3.851 12 N -0.745 5.745 13 C -0.239 4.239 14 H 0.083 0.917 15 C -0.076 4.076 16 N -0.971 5.971 17 Si 0.973 3.027 18 H -0.262 1.262 19 H -0.297 1.297 20 H -0.296 1.296 21 C -0.162 4.162 22 C -0.168 4.168 23 C -0.185 4.185 24 N -0.260 5.260 25 H 0.135 0.865 26 H 0.141 0.859 27 H 0.131 0.869 28 H 0.415 0.585 29 H 0.043 0.957 30 H 0.050 0.950 31 H 0.372 0.628 32 H 0.248 0.752 33 H 0.136 0.864 34 H 0.114 0.886 35 H 0.076 0.924 36 H 0.089 0.911 37 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.907 -1.828 14.945 19.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.030 5.030 3 N -0.056 5.056 4 N -0.143 5.143 5 C -0.169 4.169 6 C 0.398 3.602 7 O -0.409 6.409 8 N -0.329 5.329 9 C 0.072 3.928 10 H 0.093 0.907 11 C 0.023 3.977 12 N -0.388 5.388 13 C -0.371 4.371 14 H 0.101 0.899 15 C -0.268 4.268 16 N -0.623 5.623 17 Si 0.803 3.197 18 H -0.186 1.186 19 H -0.224 1.224 20 H -0.224 1.224 21 C -0.181 4.181 22 C -0.206 4.206 23 C -0.222 4.222 24 N -0.115 5.115 25 H 0.153 0.847 26 H 0.159 0.841 27 H 0.149 0.851 28 H 0.251 0.749 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.204 0.796 32 H 0.057 0.943 33 H 0.154 0.846 34 H 0.132 0.868 35 H 0.094 0.906 36 H 0.108 0.892 37 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -12.168 -2.087 14.932 19.375 hybrid contribution 0.280 0.510 -1.184 1.319 sum -11.889 -1.577 13.748 18.244 Atomic orbital electron populations 1.23282 0.64866 1.09412 1.08880 1.50852 1.12763 0.99476 1.39957 1.78849 0.96092 1.14541 1.16162 1.76148 1.11171 1.10151 1.16819 1.25182 0.93509 0.90491 1.07718 1.16176 0.81299 0.85557 0.77165 1.90742 1.85964 1.13567 1.50645 1.45704 1.03959 1.11721 1.71549 1.20773 0.83319 0.93036 0.95647 0.90706 1.21091 0.94410 0.96452 0.85754 1.42553 1.15583 1.65220 1.15464 1.19698 0.95668 1.24733 0.96994 0.89902 1.25565 0.98571 1.03408 0.99248 1.69849 1.21223 1.52765 1.18416 0.85069 0.78761 0.77499 0.78385 1.18587 1.22439 1.22350 1.22655 0.98798 1.05897 0.90787 1.22955 1.02368 0.96065 0.99164 1.23283 1.01450 0.94031 1.03431 1.75008 1.02180 1.15426 1.18907 0.84720 0.84096 0.85074 0.74851 0.93947 0.93256 0.79570 0.94278 0.84590 0.86763 0.90557 0.89235 0.87153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.55 11.62 127.77 1.49 2.04 16 2 N -0.11 -2.66 4.39 -206.58 -0.91 -3.57 16 3 N -0.06 -1.80 13.23 37.02 0.49 -1.31 16 4 N -0.27 -9.23 12.26 -52.37 -0.64 -9.87 16 5 C 0.11 4.00 8.14 137.15 1.12 5.12 16 6 C 0.62 22.74 6.52 86.83 0.57 23.31 16 7 O -0.53 -21.49 14.08 -3.82 -0.05 -21.54 16 8 N -0.68 -23.68 3.17 -445.27 -1.41 -25.10 16 9 C 0.18 5.95 2.57 44.99 0.12 6.07 16 10 H 0.07 2.86 7.58 -2.39 -0.02 2.84 16 11 C 0.15 5.66 5.78 86.38 0.50 6.16 16 12 N -0.75 -37.32 5.43 -343.46 -1.87 -39.19 16 13 C -0.24 -13.16 9.99 84.03 0.84 -12.32 16 14 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 15 C -0.08 -4.38 5.50 84.86 0.47 -3.91 16 16 N -0.97 -60.62 13.06 21.65 0.28 -60.34 16 17 Si 0.97 46.38 29.55 68.60 2.03 48.41 16 18 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 19 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 20 H -0.30 -14.19 7.11 99.48 0.71 -13.49 16 21 C -0.16 -4.30 5.73 -10.79 -0.06 -4.36 16 22 C -0.17 -4.16 9.69 30.62 0.30 -3.86 16 23 C -0.19 -4.86 9.85 30.62 0.30 -4.56 16 24 N -0.26 -7.91 12.17 -52.32 -0.64 -8.55 16 25 H 0.13 0.31 8.14 -2.39 -0.02 0.29 16 26 H 0.14 0.43 8.14 -2.39 -0.02 0.41 16 27 H 0.13 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.41 14.71 8.35 -92.71 -0.77 13.93 16 29 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.37 20.48 7.33 -92.71 -0.68 19.81 16 32 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 33 H 0.14 3.03 8.08 -2.39 -0.02 3.01 16 34 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 35 H 0.08 2.12 6.41 -2.39 -0.02 2.10 16 36 H 0.09 2.88 5.25 -2.38 -0.01 2.87 16 37 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 Total: -1.00 -75.48 320.18 2.58 -72.91 By element: Atomic # 1 Polarization: 34.80 SS G_CDS: -0.33 Total: 34.47 kcal Atomic # 6 Polarization: 8.05 SS G_CDS: 5.62 Total: 13.67 kcal Atomic # 7 Polarization: -143.22 SS G_CDS: -4.69 Total: -147.92 kcal Atomic # 8 Polarization: -21.49 SS G_CDS: -0.05 Total: -21.54 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.41 kcal Total: -75.48 2.58 -72.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723321961.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.662 kcal (2) G-P(sol) polarization free energy of solvation -75.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds