Wall clock time and date at job start Tue Mar 31 2020 02:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47515 * 2 1 4 4 N 1.46500 * 109.47087 * 120.00308 * 2 1 3 5 5 C 1.34783 * 119.99869 * 274.99848 * 4 2 1 6 6 O 1.21282 * 119.99476 * 359.97438 * 5 4 2 7 7 C 1.50694 * 119.99858 * 180.02562 * 5 4 2 8 8 N 1.46503 * 109.46969 * 180.02562 * 7 5 4 9 9 N 1.28878 * 125.44999 * 89.99560 * 8 7 5 10 10 C 1.31050 * 107.91265 * 180.02562 * 9 8 7 11 11 N 1.33317 * 106.90146 * 359.97438 * 10 9 8 12 12 N 1.28781 * 125.44371 * 269.69359 * 8 7 5 13 13 C 1.53003 * 109.46711 * 240.00085 * 2 1 3 14 14 C 1.53486 * 114.20850 * 60.00280 * 13 2 1 15 15 N 1.47064 * 87.98715 * 87.51930 * 14 13 2 16 16 C 1.36944 * 136.05968 * 207.08932 * 15 14 13 17 17 H 1.08003 * 119.99220 * 7.55219 * 16 15 14 18 18 C 1.38804 * 120.00270 * 187.55676 * 16 15 14 19 19 N 1.31616 * 120.00491 * 174.37770 * 18 16 15 20 20 Si 1.86810 * 119.99801 * 354.37977 * 18 16 15 21 21 H 1.48499 * 109.46858 * 174.95062 * 20 18 16 22 22 H 1.48498 * 109.46907 * 294.94544 * 20 18 16 23 23 H 1.48495 * 109.47036 * 54.94600 * 20 18 16 24 24 C 1.47066 * 87.88390 * 27.34185 * 15 14 13 25 25 H 1.08994 * 109.47561 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46986 * 300.00218 * 1 2 3 27 27 H 1.09004 * 109.47074 * 59.99832 * 1 2 3 28 28 H 0.96997 * 120.00381 * 94.99496 * 4 2 1 29 29 H 1.09000 * 109.46987 * 299.99215 * 7 5 4 30 30 H 1.08998 * 109.47490 * 59.99631 * 7 5 4 31 31 H 1.08003 * 126.54570 * 180.02562 * 10 9 8 32 32 H 1.08998 * 113.41116 * 286.79710 * 13 2 1 33 33 H 1.09003 * 113.46770 * 332.73878 * 14 13 2 34 34 H 1.09004 * 113.52153 * 202.31032 * 14 13 2 35 35 H 0.97003 * 119.99848 * 354.81683 * 19 18 16 36 36 H 1.08996 * 113.46631 * 87.44126 * 24 15 14 37 37 H 1.09001 * 113.46561 * 217.88042 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1471 -0.0183 2.3572 6 8 1.8590 1.1586 2.4114 7 6 2.6499 -0.7286 3.5874 8 7 2.6985 0.2125 4.7091 9 7 1.7374 0.4385 5.5375 10 6 2.1495 1.3373 6.3975 11 7 3.4010 1.6505 6.0612 12 7 3.7104 0.9424 5.0283 13 6 2.0399 -0.7213 -1.2493 14 6 1.5898 -0.0846 -2.5714 15 7 2.7723 0.7864 -2.4946 16 6 3.1105 2.0324 -2.9511 17 1 2.3637 2.6574 -3.4180 18 6 4.4131 2.4918 -2.8140 19 7 4.7655 3.6412 -3.3498 20 14 5.6662 1.4788 -1.8688 21 1 7.0008 2.1220 -1.9706 22 1 5.2629 1.3987 -0.4418 23 1 5.7308 0.1107 -2.4425 24 6 3.4340 -0.2723 -1.7172 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 2.2490 -1.6318 1.1526 29 1 1.9776 -1.5509 3.8325 30 1 3.6492 -1.1205 3.3978 31 1 1.5837 1.7456 7.2219 32 1 1.9117 -1.8029 -1.2076 33 1 0.6466 0.4562 -2.4938 34 1 1.6122 -0.7736 -3.4158 35 1 4.1374 4.1310 -3.9035 36 1 3.9431 -1.0113 -2.3358 37 1 4.0620 0.1087 -0.9119 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725251451.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:18:31 Heat of formation + Delta-G solvation = 166.456260 kcal Electronic energy + Delta-G solvation = -22032.557770 eV Core-core repulsion = 18658.172531 eV Total energy + Delta-G solvation = -3374.385238 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.139 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -44.43198 -40.22065 -38.76736 -35.31761 -34.89945 -33.19216 -32.46795 -31.12367 -29.05042 -27.87806 -25.51336 -24.17985 -24.06694 -23.20139 -21.61523 -20.76558 -19.34453 -18.10614 -17.98853 -17.42255 -16.45778 -16.33927 -16.03102 -15.22126 -15.13438 -14.55036 -14.00497 -13.92973 -13.65325 -13.37216 -13.25752 -13.00203 -12.31823 -12.17451 -12.02412 -11.55775 -11.36135 -11.26646 -11.09013 -11.05006 -10.77213 -10.68246 -10.35331 -10.29597 -9.93727 -9.32071 -9.15753 -9.08899 -8.89732 -7.18056 -6.28658 -3.23535 1.05095 1.60325 2.15454 2.28418 2.91309 3.38004 3.44081 3.64059 3.88850 4.22484 4.25811 4.39852 4.59984 4.68938 4.73286 4.82820 4.95332 5.41089 5.49566 5.54873 5.56817 5.61178 5.75359 5.79965 5.89933 5.97360 6.12185 6.16955 6.22020 6.28574 6.39832 6.46706 6.79776 7.09718 7.25857 7.94416 8.24362 8.24567 8.97703 9.50032 10.34961 11.21207 Molecular weight = 280.14amu Principal moments of inertia in cm(-1) A = 0.018968 B = 0.005012 C = 0.004363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.854911 B = 5584.715810 C = 6416.787652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.167 3.833 3 H 0.105 0.895 4 N -0.712 5.712 5 C 0.501 3.499 6 O -0.513 6.513 7 C 0.109 3.891 8 N -0.126 5.126 9 N -0.304 5.304 10 C 0.144 3.856 11 N -0.285 5.285 12 N -0.045 5.045 13 C -0.142 4.142 14 C 0.131 3.869 15 N -0.626 5.626 16 C -0.305 4.305 17 H 0.083 0.917 18 C -0.023 4.023 19 N -0.933 5.933 20 Si 1.069 2.931 21 H -0.295 1.295 22 H -0.293 1.293 23 H -0.288 1.288 24 C 0.099 3.901 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.072 0.928 28 H 0.400 0.600 29 H 0.145 0.855 30 H 0.148 0.852 31 H 0.236 0.764 32 H 0.079 0.921 33 H 0.049 0.951 34 H 0.041 0.959 35 H 0.261 0.739 36 H 0.047 0.953 37 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.697 -15.931 14.931 23.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.063 3.937 3 H 0.123 0.877 4 N -0.364 5.364 5 C 0.283 3.717 6 O -0.387 6.387 7 C -0.015 4.015 8 N -0.037 5.037 9 N -0.153 5.153 10 C -0.159 4.159 11 N -0.156 5.156 12 N -0.039 5.039 13 C -0.162 4.162 14 C 0.004 3.996 15 N -0.355 5.355 16 C -0.432 4.432 17 H 0.100 0.900 18 C -0.222 4.222 19 N -0.575 5.575 20 Si 0.901 3.099 21 H -0.222 1.222 22 H -0.221 1.221 23 H -0.215 1.215 24 C -0.026 4.026 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.091 0.909 28 H 0.235 0.765 29 H 0.163 0.837 30 H 0.165 0.835 31 H 0.252 0.748 32 H 0.098 0.902 33 H 0.068 0.932 34 H 0.059 0.941 35 H 0.071 0.929 36 H 0.064 0.936 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.785 -14.894 14.996 21.913 hybrid contribution -1.954 -0.431 -0.449 2.051 sum -7.739 -15.325 14.547 22.503 Atomic orbital electron populations 1.22110 0.95047 1.01624 1.02744 1.20739 0.93613 0.98236 0.81075 0.87730 1.45935 1.67075 1.13968 1.09395 1.20158 0.79277 0.87795 0.84495 1.90859 1.48437 1.15171 1.84265 1.22031 1.07883 0.89926 0.81703 1.49480 1.06133 1.27784 1.20326 1.74673 1.17041 1.20051 1.03562 1.27335 0.92168 0.95567 1.00876 1.75899 1.13916 1.18710 1.07096 1.79059 1.13404 1.02215 1.09259 1.23208 0.99643 0.98267 0.95098 1.22356 0.92785 0.91915 0.92583 1.46032 1.13168 1.12600 1.63707 1.20139 0.96435 0.88586 1.38000 0.89953 1.25679 0.96085 0.99132 1.01281 1.70909 1.37617 1.15047 1.33951 0.83740 0.76073 0.74509 0.75544 1.22179 1.22114 1.21505 1.22834 0.93921 0.91332 0.94559 0.92690 0.92530 0.90904 0.76532 0.83708 0.83459 0.74818 0.90245 0.93238 0.94131 0.92899 0.93591 0.92926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.03 9.29 37.16 0.35 -1.69 16 2 C 0.17 2.49 2.43 -67.93 -0.16 2.32 16 3 H 0.10 2.15 7.36 -51.93 -0.38 1.77 16 4 N -0.71 -7.94 5.08 -53.80 -0.27 -8.21 16 5 C 0.50 6.52 7.86 -10.99 -0.09 6.43 16 6 O -0.51 -9.73 16.09 5.56 0.09 -9.64 16 7 C 0.11 0.93 7.08 -5.19 -0.04 0.89 16 8 N -0.13 -1.60 3.49 -11.72 -0.04 -1.64 16 9 N -0.30 -3.79 12.13 29.34 0.36 -3.43 16 10 C 0.14 1.64 13.26 -91.58 -1.21 0.42 16 11 N -0.29 -4.13 12.50 29.34 0.37 -3.77 16 12 N -0.05 -0.68 13.25 60.35 0.80 0.12 16 13 C -0.14 -2.11 3.73 -89.97 -0.34 -2.45 16 14 C 0.13 2.36 8.08 -8.52 -0.07 2.29 16 15 N -0.63 -14.94 3.49 -184.63 -0.64 -15.58 16 16 C -0.31 -8.83 11.08 -15.06 -0.17 -9.00 16 17 H 0.08 2.52 8.06 -52.48 -0.42 2.09 16 18 C -0.02 -0.69 5.50 -17.43 -0.10 -0.78 16 19 N -0.93 -30.06 13.70 55.49 0.76 -29.30 16 20 Si 1.07 27.27 25.16 -169.99 -4.28 23.00 16 21 H -0.29 -7.70 7.11 56.52 0.40 -7.29 16 22 H -0.29 -7.23 6.51 56.52 0.37 -6.87 16 23 H -0.29 -6.69 6.20 56.52 0.35 -6.34 16 24 C 0.10 1.96 5.24 -8.38 -0.04 1.91 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.07 0.99 6.50 -51.93 -0.34 0.65 16 28 H 0.40 2.66 8.60 -40.82 -0.35 2.31 16 29 H 0.15 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.15 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.24 1.48 8.06 -52.48 -0.42 1.06 16 32 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.05 0.87 6.43 -51.93 -0.33 0.54 16 34 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.26 8.29 8.73 -40.82 -0.36 7.93 16 36 H 0.05 0.88 7.66 -51.93 -0.40 0.48 16 37 H 0.05 1.11 4.71 -51.93 -0.24 0.87 16 LS Contribution 313.22 15.07 4.72 4.72 Total: -1.00 -39.76 313.22 -4.68 -44.44 By element: Atomic # 1 Polarization: 3.63 SS G_CDS: -4.67 Total: -1.04 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: -1.87 Total: 0.35 kcal Atomic # 7 Polarization: -63.15 SS G_CDS: 1.32 Total: -61.82 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: 0.09 Total: -9.64 kcal Atomic # 14 Polarization: 27.27 SS G_CDS: -4.28 Total: 23.00 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -39.76 -4.68 -44.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725251451.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 210.895 kcal (2) G-P(sol) polarization free energy of solvation -39.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 171.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 166.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds