Wall clock time and date at job start Tue Mar 31 2020 02:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47515 * 2 1 4 4 N 1.46500 * 109.47087 * 120.00308 * 2 1 3 5 5 C 1.34783 * 119.99869 * 274.99848 * 4 2 1 6 6 O 1.21282 * 119.99476 * 359.97438 * 5 4 2 7 7 C 1.50694 * 119.99858 * 180.02562 * 5 4 2 8 8 N 1.46503 * 109.46969 * 180.02562 * 7 5 4 9 9 N 1.28878 * 125.44999 * 89.99560 * 8 7 5 10 10 C 1.31050 * 107.91265 * 180.02562 * 9 8 7 11 11 N 1.33317 * 106.90146 * 359.97438 * 10 9 8 12 12 N 1.28781 * 125.44371 * 269.69359 * 8 7 5 13 13 C 1.53003 * 109.46711 * 240.00085 * 2 1 3 14 14 C 1.53486 * 114.20850 * 60.00280 * 13 2 1 15 15 N 1.47064 * 87.98715 * 87.51930 * 14 13 2 16 16 C 1.36944 * 136.05968 * 207.08932 * 15 14 13 17 17 H 1.08003 * 119.99220 * 7.55219 * 16 15 14 18 18 C 1.38804 * 120.00270 * 187.55676 * 16 15 14 19 19 N 1.31616 * 120.00491 * 174.37770 * 18 16 15 20 20 Si 1.86810 * 119.99801 * 354.37977 * 18 16 15 21 21 H 1.48499 * 109.46858 * 174.95062 * 20 18 16 22 22 H 1.48498 * 109.46907 * 294.94544 * 20 18 16 23 23 H 1.48495 * 109.47036 * 54.94600 * 20 18 16 24 24 C 1.47066 * 87.88390 * 27.34185 * 15 14 13 25 25 H 1.08994 * 109.47561 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46986 * 300.00218 * 1 2 3 27 27 H 1.09004 * 109.47074 * 59.99832 * 1 2 3 28 28 H 0.96997 * 120.00381 * 94.99496 * 4 2 1 29 29 H 1.09000 * 109.46987 * 299.99215 * 7 5 4 30 30 H 1.08998 * 109.47490 * 59.99631 * 7 5 4 31 31 H 1.08003 * 126.54570 * 180.02562 * 10 9 8 32 32 H 1.08998 * 113.41116 * 286.79710 * 13 2 1 33 33 H 1.09003 * 113.46770 * 332.73878 * 14 13 2 34 34 H 1.09004 * 113.52153 * 202.31032 * 14 13 2 35 35 H 0.97003 * 119.99848 * 354.81683 * 19 18 16 36 36 H 1.08996 * 113.46631 * 87.44126 * 24 15 14 37 37 H 1.09001 * 113.46561 * 217.88042 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1471 -0.0183 2.3572 6 8 1.8590 1.1586 2.4114 7 6 2.6499 -0.7286 3.5874 8 7 2.6985 0.2125 4.7091 9 7 1.7374 0.4385 5.5375 10 6 2.1495 1.3373 6.3975 11 7 3.4010 1.6505 6.0612 12 7 3.7104 0.9424 5.0283 13 6 2.0399 -0.7213 -1.2493 14 6 1.5898 -0.0846 -2.5714 15 7 2.7723 0.7864 -2.4946 16 6 3.1105 2.0324 -2.9511 17 1 2.3637 2.6574 -3.4180 18 6 4.4131 2.4918 -2.8140 19 7 4.7655 3.6412 -3.3498 20 14 5.6662 1.4788 -1.8688 21 1 7.0008 2.1220 -1.9706 22 1 5.2629 1.3987 -0.4418 23 1 5.7308 0.1107 -2.4425 24 6 3.4340 -0.2723 -1.7172 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 2.2490 -1.6318 1.1526 29 1 1.9776 -1.5509 3.8325 30 1 3.6492 -1.1205 3.3978 31 1 1.5837 1.7456 7.2219 32 1 1.9117 -1.8029 -1.2076 33 1 0.6466 0.4562 -2.4938 34 1 1.6122 -0.7736 -3.4158 35 1 4.1374 4.1310 -3.9035 36 1 3.9431 -1.0113 -2.3358 37 1 4.0620 0.1087 -0.9119 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725251451.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:18:30 Heat of formation + Delta-G solvation = 132.789407 kcal Electronic energy + Delta-G solvation = -22034.017674 eV Core-core repulsion = 18658.172531 eV Total energy + Delta-G solvation = -3375.845143 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.139 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -45.35275 -41.37825 -40.15017 -36.44795 -35.94896 -34.57318 -34.11473 -32.33805 -30.07547 -29.53331 -27.01814 -25.49610 -24.98677 -24.43513 -23.12609 -21.81438 -20.79868 -19.59406 -18.97860 -18.89089 -17.58283 -17.44892 -16.93678 -16.86500 -16.09894 -15.93843 -15.63455 -15.20551 -14.96690 -14.82933 -14.62854 -13.96254 -13.56077 -13.42830 -13.16972 -12.94998 -12.83868 -12.71294 -12.30452 -12.23098 -12.07323 -12.05710 -11.74543 -11.67719 -11.31555 -11.07496 -11.00942 -10.85842 -10.25393 -9.20470 -8.63117 -5.47511 0.08950 0.84920 1.25447 1.30297 1.33478 1.43711 1.61832 1.99245 2.51769 3.03241 3.17480 3.19974 3.31938 3.48881 3.54573 3.75833 3.91360 4.04414 4.32078 4.36287 4.53167 4.61407 4.67929 4.70953 4.73156 4.77628 4.78406 4.85192 5.03825 5.09056 5.19049 5.25451 5.32830 5.54690 5.94835 6.37480 6.69631 7.09476 7.30199 7.32963 8.27940 8.88863 Molecular weight = 280.14amu Principal moments of inertia in cm(-1) A = 0.018968 B = 0.005012 C = 0.004363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.854911 B = 5584.715810 C = 6416.787652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.169 3.831 3 H 0.038 0.962 4 N -0.691 5.691 5 C 0.497 3.503 6 O -0.584 6.584 7 C 0.108 3.892 8 N -0.123 5.123 9 N -0.312 5.312 10 C 0.146 3.854 11 N -0.316 5.316 12 N -0.078 5.078 13 C -0.103 4.103 14 C 0.123 3.877 15 N -0.666 5.666 16 C -0.285 4.285 17 H 0.045 0.955 18 C -0.091 4.091 19 N -0.977 5.977 20 Si 1.111 2.889 21 H -0.309 1.309 22 H -0.287 1.287 23 H -0.244 1.244 24 C 0.087 3.913 25 H 0.097 0.903 26 H 0.039 0.961 27 H 0.059 0.941 28 H 0.428 0.572 29 H 0.197 0.803 30 H 0.185 0.815 31 H 0.276 0.724 32 H 0.146 0.854 33 H 0.047 0.953 34 H 0.067 0.933 35 H 0.245 0.755 36 H 0.069 0.931 37 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.534 -20.897 16.414 27.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.064 3.936 3 H 0.056 0.944 4 N -0.345 5.345 5 C 0.281 3.719 6 O -0.463 6.463 7 C -0.015 4.015 8 N -0.036 5.036 9 N -0.162 5.162 10 C -0.156 4.156 11 N -0.187 5.187 12 N -0.072 5.072 13 C -0.122 4.122 14 C -0.002 4.002 15 N -0.395 5.395 16 C -0.413 4.413 17 H 0.063 0.937 18 C -0.282 4.282 19 N -0.623 5.623 20 Si 0.938 3.062 21 H -0.238 1.238 22 H -0.215 1.215 23 H -0.169 1.169 24 C -0.037 4.037 25 H 0.115 0.885 26 H 0.058 0.942 27 H 0.078 0.922 28 H 0.268 0.732 29 H 0.214 0.786 30 H 0.202 0.798 31 H 0.291 0.709 32 H 0.164 0.836 33 H 0.066 0.934 34 H 0.085 0.915 35 H 0.054 0.946 36 H 0.086 0.914 37 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -6.658 -19.986 16.473 26.741 hybrid contribution -1.893 1.101 -0.937 2.383 sum -8.551 -18.884 15.535 25.905 Atomic orbital electron populations 1.22013 0.93353 1.03839 1.01358 1.20415 0.94867 0.95450 0.82883 0.94358 1.45635 1.66057 1.15053 1.07754 1.20943 0.77946 0.87080 0.85924 1.90845 1.51533 1.18440 1.85468 1.22543 1.11089 0.89355 0.78495 1.49846 1.05539 1.27513 1.20725 1.74657 1.17115 1.20560 1.03871 1.28198 0.91427 0.94699 1.01296 1.75849 1.15631 1.19526 1.07665 1.78981 1.14785 1.03363 1.10058 1.23003 0.95001 1.01461 0.92781 1.22682 0.90766 0.91331 0.95395 1.46156 1.16513 1.12368 1.64506 1.19986 0.95272 0.90940 1.35095 0.93708 1.27049 0.98755 0.99706 1.02709 1.71011 1.37811 1.16944 1.36538 0.83258 0.72923 0.75225 0.74843 1.23777 1.21501 1.16858 1.23142 0.96444 0.90200 0.93929 0.88463 0.94210 0.92177 0.73197 0.78604 0.79817 0.70870 0.83627 0.93447 0.91535 0.94649 0.91373 0.94442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.44 9.29 71.98 0.67 -2.78 16 2 C 0.17 4.63 2.43 44.99 0.11 4.74 16 3 H 0.04 1.60 7.36 -2.39 -0.02 1.58 16 4 N -0.69 -12.74 5.08 -442.52 -2.25 -14.98 16 5 C 0.50 11.81 7.86 87.65 0.69 12.50 16 6 O -0.58 -22.37 16.09 -3.04 -0.05 -22.42 16 7 C 0.11 1.42 7.08 85.63 0.61 2.02 16 8 N -0.12 -2.89 3.49 -190.99 -0.67 -3.56 16 9 N -0.31 -7.19 12.13 -61.09 -0.74 -7.93 16 10 C 0.15 3.13 13.26 180.68 2.40 5.53 16 11 N -0.32 -9.03 12.50 -61.10 -0.76 -9.79 16 12 N -0.08 -2.30 13.25 37.02 0.49 -1.81 16 13 C -0.10 -2.58 3.73 -10.37 -0.04 -2.62 16 14 C 0.12 4.10 8.08 83.17 0.67 4.77 16 15 N -0.67 -31.22 3.49 -738.03 -2.58 -33.80 16 16 C -0.28 -17.06 11.08 84.03 0.93 -16.13 16 17 H 0.04 2.92 8.06 -2.91 -0.02 2.90 16 18 C -0.09 -5.69 5.50 84.86 0.47 -5.22 16 19 N -0.98 -66.25 13.70 21.65 0.30 -65.95 16 20 Si 1.11 55.67 25.16 68.60 1.73 57.40 16 21 H -0.31 -16.09 7.11 99.48 0.71 -15.38 16 22 H -0.29 -13.90 6.51 99.48 0.65 -13.25 16 23 H -0.24 -10.35 6.20 99.48 0.62 -9.73 16 24 C 0.09 3.13 5.24 83.26 0.44 3.57 16 25 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.04 1.06 8.14 -2.39 -0.02 1.05 16 27 H 0.06 1.55 6.50 -2.39 -0.02 1.53 16 28 H 0.43 2.99 8.60 -92.71 -0.80 2.19 16 29 H 0.20 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.18 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.28 2.83 8.06 -2.91 -0.02 2.81 16 32 H 0.15 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.05 1.59 6.43 -2.39 -0.02 1.57 16 34 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.24 16.64 8.73 -92.71 -0.81 15.83 16 36 H 0.07 2.22 7.66 -2.39 -0.02 2.20 16 37 H 0.04 1.48 4.71 -2.39 -0.01 1.47 16 Total: -1.00 -97.42 313.22 2.53 -94.89 By element: Atomic # 1 Polarization: 1.45 SS G_CDS: 0.12 Total: 1.57 kcal Atomic # 6 Polarization: -0.55 SS G_CDS: 6.94 Total: 6.39 kcal Atomic # 7 Polarization: -131.61 SS G_CDS: -6.21 Total: -137.82 kcal Atomic # 8 Polarization: -22.37 SS G_CDS: -0.05 Total: -22.42 kcal Atomic # 14 Polarization: 55.67 SS G_CDS: 1.73 Total: 57.40 kcal Total: -97.42 2.53 -94.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725251451.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 227.677 kcal (2) G-P(sol) polarization free energy of solvation -97.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds