Wall clock time and date at job start Tue Mar 31 2020 02:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46493 * 109.47073 * 2 1 4 4 C 1.36939 * 120.00447 * 275.31022 * 3 2 1 5 5 H 1.08004 * 119.99560 * 37.56681 * 4 3 2 6 6 C 1.38811 * 120.00369 * 217.58156 * 4 3 2 7 7 N 1.31618 * 120.00243 * 21.42701 * 6 4 3 8 8 Si 1.86802 * 119.99890 * 201.42848 * 6 4 3 9 9 H 1.48494 * 109.47077 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.46858 * 119.99702 * 8 6 4 11 11 H 1.48495 * 109.47016 * 239.99686 * 8 6 4 12 12 C 1.46504 * 120.00364 * 95.31056 * 3 2 1 13 13 C 1.53003 * 109.47120 * 270.00154 * 12 3 2 14 14 N 1.46502 * 109.47027 * 179.97438 * 13 12 3 15 15 C 1.34770 * 119.99728 * 179.97438 * 14 13 12 16 16 O 1.21573 * 120.00193 * 359.97438 * 15 14 13 17 17 C 1.47693 * 119.99866 * 180.02562 * 15 14 13 18 18 C 1.39660 * 120.16669 * 359.97438 * 17 15 14 19 19 C 1.37853 * 119.87644 * 179.97438 * 18 17 15 20 20 C 1.38458 * 120.22185 * 0.02562 * 19 18 17 21 21 C 1.38205 * 120.34063 * 0.02562 * 20 19 18 22 22 C 1.38320 * 120.11163 * 359.95181 * 21 20 19 23 23 F 1.35103 * 120.10751 * 180.02562 * 22 21 20 24 24 H 1.08998 * 109.47277 * 59.99754 * 1 2 3 25 25 H 1.09004 * 109.46893 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47339 * 300.00027 * 1 2 3 27 27 H 1.08997 * 109.47339 * 239.99973 * 2 1 3 28 28 H 1.09004 * 109.47243 * 119.99841 * 2 1 3 29 29 H 0.96994 * 120.00272 * 180.02562 * 7 6 4 30 30 H 1.08998 * 109.47686 * 149.99598 * 12 3 2 31 31 H 1.09005 * 109.46938 * 29.99870 * 12 3 2 32 32 H 1.09006 * 109.47003 * 59.99431 * 13 12 3 33 33 H 1.08994 * 109.46538 * 299.99744 * 13 12 3 34 34 H 0.97000 * 119.99783 * 359.97438 * 14 13 12 35 35 H 1.07999 * 120.05845 * 0.25931 * 18 17 15 36 36 H 1.08006 * 119.88979 * 180.02562 * 19 18 17 37 37 H 1.07999 * 119.83443 * 179.97438 * 20 19 18 38 38 H 1.07995 * 119.94476 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1431 2.0634 -1.1808 5 1 1.4105 1.9277 -1.9628 6 6 3.2111 2.9289 -1.3728 7 7 4.3027 2.7980 -0.6491 8 14 3.0992 4.2796 -2.6584 9 1 1.7775 4.2135 -3.3320 10 1 3.2549 5.6023 -2.0014 11 1 4.1765 4.0964 -3.6638 12 6 2.3732 2.0327 1.2633 13 6 1.1425 2.7383 1.8366 14 7 1.4973 3.3893 3.1001 15 6 0.5649 4.0767 3.7890 16 8 -0.5704 4.1569 3.3616 17 6 0.9227 4.7335 5.0625 18 6 2.2260 4.6441 5.5564 19 6 2.5535 5.2599 6.7455 20 6 1.5946 5.9661 7.4518 21 6 0.3019 6.0596 6.9720 22 6 -0.0418 5.4475 5.7801 23 9 -1.3054 5.5393 5.3109 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 5.0488 3.4031 -0.7831 30 1 3.1617 2.7641 1.0860 31 1 2.7255 1.2833 1.9722 32 1 0.3540 2.0068 2.0139 33 1 0.7903 3.4876 1.1277 34 1 2.4032 3.3256 3.4409 35 1 2.9769 4.0973 5.0055 36 1 3.5614 5.1912 7.1274 37 1 1.8580 6.4458 8.3829 38 1 -0.4410 6.6117 7.5283 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731798763.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:43:49 Heat of formation + Delta-G solvation = -37.409853 kcal Electronic energy + Delta-G solvation = -21527.016617 eV Core-core repulsion = 18091.578368 eV Total energy + Delta-G solvation = -3435.438249 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -48.84720 -39.86535 -38.23430 -36.30642 -34.17135 -31.90715 -31.71102 -30.66196 -29.50486 -27.50969 -24.58599 -23.83132 -22.81628 -21.67315 -20.50811 -20.14004 -18.20834 -17.17080 -16.51545 -16.47794 -15.74594 -15.30189 -15.11349 -14.98851 -14.60874 -14.50669 -13.85022 -13.68609 -13.31889 -13.20527 -12.77374 -12.40340 -12.37063 -12.21804 -12.03276 -11.57730 -11.48425 -11.14085 -10.79225 -10.65401 -10.50102 -10.10154 -9.88979 -9.86247 -9.57581 -9.37212 -8.94911 -8.58972 -8.46350 -6.64774 -5.85810 -3.44392 0.58190 0.94836 2.88392 3.32404 3.42028 3.43257 3.47157 3.67884 4.06117 4.44061 4.46270 4.59451 4.74003 5.00329 5.03595 5.26484 5.46364 5.52524 5.76018 5.81139 5.91810 5.98552 6.07340 6.10653 6.15023 6.37812 6.40862 6.49202 6.57666 6.67799 6.82577 6.90888 6.99614 7.16046 7.50547 7.79098 7.85020 8.45592 8.50888 9.12602 9.74463 10.32335 11.14388 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.018729 B = 0.004306 C = 0.004019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.630994 B = 6500.748301 C = 6965.864700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.141 3.859 3 N -0.580 5.580 4 C -0.260 4.260 5 H 0.062 0.938 6 C 0.014 3.986 7 N -0.888 5.888 8 Si 0.896 3.104 9 H -0.275 1.275 10 H -0.287 1.287 11 H -0.289 1.289 12 C 0.137 3.863 13 C 0.097 3.903 14 N -0.712 5.712 15 C 0.547 3.453 16 O -0.532 6.532 17 C -0.166 4.166 18 C -0.058 4.058 19 C -0.140 4.140 20 C -0.071 4.071 21 C -0.168 4.168 22 C 0.155 3.845 23 F -0.116 7.116 24 H 0.050 0.950 25 H 0.037 0.963 26 H 0.044 0.956 27 H 0.046 0.954 28 H 0.034 0.966 29 H 0.254 0.746 30 H 0.099 0.901 31 H 0.029 0.971 32 H 0.054 0.946 33 H 0.066 0.934 34 H 0.396 0.604 35 H 0.139 0.861 36 H 0.135 0.865 37 H 0.135 0.865 38 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.630 3.839 16.615 17.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.015 3.985 3 N -0.300 5.300 4 C -0.390 4.390 5 H 0.080 0.920 6 C -0.186 4.186 7 N -0.530 5.530 8 Si 0.725 3.275 9 H -0.199 1.199 10 H -0.214 1.214 11 H -0.216 1.216 12 C 0.010 3.990 13 C -0.028 4.028 14 N -0.363 5.363 15 C 0.333 3.667 16 O -0.410 6.410 17 C -0.170 4.170 18 C -0.077 4.077 19 C -0.158 4.158 20 C -0.089 4.089 21 C -0.187 4.187 22 C 0.135 3.865 23 F -0.094 7.094 24 H 0.069 0.931 25 H 0.056 0.944 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.053 0.947 29 H 0.064 0.936 30 H 0.116 0.884 31 H 0.047 0.953 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.230 0.770 35 H 0.156 0.844 36 H 0.153 0.847 37 H 0.153 0.847 38 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -2.326 3.927 16.198 16.829 hybrid contribution 0.171 0.814 -0.518 0.980 sum -2.156 4.742 15.680 16.523 Atomic orbital electron populations 1.22392 0.99883 0.99110 1.01438 1.20881 0.91781 0.86922 0.98907 1.43618 1.76037 1.08325 1.02063 1.19076 1.04774 1.21194 0.93944 0.91999 1.25174 0.94130 1.01201 0.98130 1.69998 1.03193 1.37275 1.42568 0.86340 0.77818 0.82153 0.81200 1.19932 1.21374 1.21555 1.21061 0.94507 0.96962 0.86484 1.22527 1.01247 0.96611 0.82408 1.46036 1.12861 1.52886 1.24541 1.18024 0.85589 0.79428 0.83695 1.90824 1.19977 1.60801 1.69361 1.20298 0.94824 1.03998 0.97912 1.21327 0.94271 0.96651 0.95436 1.21169 1.00309 0.98930 0.95401 1.21182 0.91918 0.96467 0.99337 1.21159 0.98521 1.03144 0.95840 1.17766 0.79574 0.96411 0.92771 1.91599 1.36015 1.93732 1.88011 0.93085 0.94425 0.93658 0.93542 0.94721 0.93568 0.88367 0.95256 0.92774 0.91549 0.76952 0.84354 0.84666 0.84677 0.84216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.16 10.21 37.16 0.38 -2.78 16 2 C 0.14 2.96 6.44 -4.05 -0.03 2.93 16 3 N -0.58 -14.07 2.43 -173.24 -0.42 -14.50 16 4 C -0.26 -6.99 9.45 -15.06 -0.14 -7.13 16 5 H 0.06 1.68 7.92 -52.48 -0.42 1.27 16 6 C 0.01 0.37 4.95 -17.43 -0.09 0.29 16 7 N -0.89 -24.58 11.47 55.49 0.64 -23.94 16 8 Si 0.90 21.40 29.61 -169.99 -5.03 16.37 16 9 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 12 C 0.14 3.04 5.45 -4.04 -0.02 3.01 16 13 C 0.10 2.00 6.00 -4.04 -0.02 1.97 16 14 N -0.71 -12.25 5.51 -61.30 -0.34 -12.58 16 15 C 0.55 9.93 7.77 -12.40 -0.10 9.83 16 16 O -0.53 -11.81 15.34 5.30 0.08 -11.73 16 17 C -0.17 -2.38 5.88 -104.91 -0.62 -3.00 16 18 C -0.06 -0.62 9.54 -39.19 -0.37 -0.99 16 19 C -0.14 -1.16 10.03 -39.64 -0.40 -1.55 16 20 C -0.07 -0.56 10.03 -39.51 -0.40 -0.95 16 21 C -0.17 -1.67 10.01 -39.56 -0.40 -2.06 16 22 C 0.16 2.16 7.29 -38.96 -0.28 1.88 16 23 F -0.12 -1.92 15.55 2.25 0.04 -1.88 16 24 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 25 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.04 0.86 6.64 -51.93 -0.34 0.51 16 27 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 28 H 0.03 0.67 7.83 -51.93 -0.41 0.26 16 29 H 0.25 6.77 8.31 -40.82 -0.34 6.43 16 30 H 0.10 2.42 5.52 -51.93 -0.29 2.14 16 31 H 0.03 0.60 7.86 -51.93 -0.41 0.19 16 32 H 0.05 1.14 6.64 -51.93 -0.34 0.79 16 33 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 34 H 0.40 5.59 6.51 -40.82 -0.27 5.32 16 35 H 0.14 1.22 6.41 -52.49 -0.34 0.89 16 36 H 0.14 0.75 8.06 -52.48 -0.42 0.32 16 37 H 0.14 0.64 8.06 -52.49 -0.42 0.21 16 38 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 LS Contribution 324.59 15.07 4.89 4.89 Total: -1.00 -32.07 324.59 -7.53 -39.60 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -4.90 Total: 2.33 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: -2.48 Total: 1.44 kcal Atomic # 7 Polarization: -50.90 SS G_CDS: -0.12 Total: -51.02 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: 0.08 Total: -11.73 kcal Atomic # 9 Polarization: -1.92 SS G_CDS: 0.04 Total: -1.88 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.03 Total: 16.37 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -32.07 -7.53 -39.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731798763.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.186 kcal (2) G-P(sol) polarization free energy of solvation -32.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds