Wall clock time and date at job start Tue Mar 31 2020 02:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.28722 * 125.31634 * 2 1 4 4 N 1.28988 * 108.98530 * 179.72746 * 3 2 1 5 5 C 1.34190 * 107.24911 * 0.43421 * 4 3 2 6 6 C 1.48011 * 126.69632 * 179.83440 * 5 4 3 7 7 O 1.21532 * 120.00065 * 179.68470 * 6 5 4 8 8 N 1.34777 * 119.99707 * 359.96589 * 6 5 4 9 9 C 1.46500 * 119.99593 * 179.72664 * 8 6 5 10 10 C 1.53005 * 109.47068 * 180.02562 * 9 8 6 11 11 N 1.46500 * 109.47068 * 180.02562 * 10 9 8 12 12 C 1.36939 * 119.99686 * 269.99527 * 11 10 9 13 13 H 1.07992 * 119.99946 * 141.42749 * 12 11 10 14 14 C 1.38813 * 119.99874 * 321.42725 * 12 11 10 15 15 N 1.31620 * 120.00180 * 157.76915 * 14 12 11 16 16 Si 1.86804 * 120.00181 * 337.76237 * 14 12 11 17 17 H 1.48497 * 109.46909 * 95.68219 * 16 14 12 18 18 H 1.48500 * 109.47340 * 215.68381 * 16 14 12 19 19 H 1.48500 * 109.47213 * 335.68555 * 16 14 12 20 20 C 1.46497 * 120.00159 * 89.99768 * 11 10 9 21 21 C 1.53001 * 117.49835 * 183.18727 * 20 11 10 22 22 C 1.53001 * 117.50025 * 114.53053 * 20 11 10 23 23 N 1.28866 * 125.32115 * 180.02562 * 2 1 3 24 24 H 1.09003 * 109.46626 * 269.99514 * 1 2 3 25 25 H 1.08994 * 109.47073 * 29.99498 * 1 2 3 26 26 H 1.09001 * 109.47090 * 150.00081 * 1 2 3 27 27 H 0.96998 * 120.00327 * 359.71722 * 8 6 5 28 28 H 1.09001 * 109.47035 * 299.98972 * 9 8 6 29 29 H 1.09001 * 109.47393 * 59.99736 * 9 8 6 30 30 H 1.09006 * 109.46614 * 299.99719 * 10 9 8 31 31 H 1.08993 * 109.47531 * 59.99393 * 10 9 8 32 32 H 0.96994 * 119.99839 * 179.97438 * 15 14 12 33 33 H 1.09001 * 115.54916 * 328.86078 * 20 11 10 34 34 H 1.09003 * 117.49690 * 0.02562 * 21 20 11 35 35 H 1.08996 * 117.50041 * 145.01809 * 21 20 11 36 36 H 1.09003 * 117.49576 * 214.97962 * 22 20 11 37 37 H 1.09006 * 117.49870 * 359.97160 * 22 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2092 1.0503 0.0000 4 7 3.4470 0.6876 0.0058 5 6 3.4685 -0.6541 -0.0001 6 6 4.6693 -1.5194 -0.0003 7 8 4.5470 -2.7285 -0.0003 8 7 5.8984 -0.9664 0.0054 9 6 7.0869 -1.8229 0.0113 10 6 8.3441 -0.9507 0.0176 11 7 9.5326 -1.8073 0.0229 12 6 10.0824 -2.2079 1.2113 13 1 10.4738 -3.2091 1.3149 14 6 10.1368 -1.3271 2.2828 15 7 10.2412 -1.7898 3.5105 16 14 10.0619 0.5151 1.9824 17 1 8.6627 0.9862 2.1422 18 1 10.9338 1.2123 2.9616 19 1 10.5294 0.8114 0.6044 20 6 10.1328 -2.2351 -1.2431 21 6 11.3270 -3.1889 -1.1720 22 6 11.5387 -1.7252 -1.5664 23 7 2.2101 -1.0515 -0.0005 24 1 -0.3633 -0.0001 1.0277 25 1 -0.3633 0.8900 -0.5137 26 1 -0.3633 -0.8900 -0.5138 27 1 5.9961 -0.0013 0.0053 28 1 7.0771 -2.4517 0.9016 29 1 7.0855 -2.4525 -0.8785 30 1 8.3541 -0.3215 -0.8725 31 1 8.3453 -0.3214 0.9074 32 1 10.2796 -1.1743 4.2592 33 1 9.4387 -2.3586 -2.0745 34 1 11.6657 -3.4985 -0.1833 35 1 11.4188 -3.9398 -1.9567 36 1 11.7695 -1.5136 -2.6105 37 1 12.0168 -1.0709 -0.8373 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731878809.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:53:57 Heat of formation + Delta-G solvation = 157.391332 kcal Electronic energy + Delta-G solvation = -21409.298255 eV Core-core repulsion = 18034.519932 eV Total energy + Delta-G solvation = -3374.778323 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.139 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.59823 -39.42402 -37.37029 -35.48586 -35.04796 -33.35354 -33.26428 -31.43033 -29.41260 -27.92600 -25.33867 -24.17340 -23.25656 -22.32062 -21.42519 -20.92406 -19.69324 -18.56611 -17.83522 -17.10307 -16.32117 -15.91198 -15.67469 -15.18494 -14.97018 -14.27528 -14.11184 -13.94629 -13.73604 -13.56971 -13.15294 -12.56945 -12.38027 -12.26187 -11.90900 -11.71191 -11.34744 -11.32229 -10.88232 -10.76180 -10.58140 -10.45064 -10.29174 -10.05241 -9.90717 -9.53067 -9.45199 -8.84514 -8.56105 -6.83675 -6.08036 -3.52875 0.80026 1.32733 1.51684 2.85719 3.15109 3.24480 3.42482 3.47652 3.84332 3.98549 4.41705 4.43930 4.60608 4.71975 4.77883 4.89220 5.09246 5.21008 5.39724 5.69062 5.71037 5.73130 5.77439 5.96478 6.04628 6.13703 6.38524 6.41794 6.51237 6.57884 6.75268 6.90840 7.10129 7.49997 7.94166 7.97332 8.18094 8.33511 8.88582 9.60687 9.98724 11.06227 Molecular weight = 280.14amu Principal moments of inertia in cm(-1) A = 0.022497 B = 0.004069 C = 0.003785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.288562 B = 6880.292495 C = 7394.995927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.138 5.138 3 N -0.058 5.058 4 N -0.253 5.253 5 C 0.136 3.864 6 C 0.610 3.390 7 O -0.509 6.509 8 N -0.698 5.698 9 C 0.100 3.900 10 C 0.130 3.870 11 N -0.567 5.567 12 C -0.276 4.276 13 H 0.086 0.914 14 C 0.042 3.958 15 N -0.891 5.891 16 Si 0.871 3.129 17 H -0.283 1.283 18 H -0.299 1.299 19 H -0.265 1.265 20 C 0.118 3.882 21 C -0.186 4.186 22 C -0.222 4.222 23 N -0.249 5.249 24 H 0.105 0.895 25 H 0.115 0.885 26 H 0.114 0.886 27 H 0.407 0.593 28 H 0.084 0.916 29 H 0.068 0.932 30 H 0.051 0.949 31 H 0.062 0.938 32 H 0.265 0.735 33 H 0.093 0.907 34 H 0.104 0.896 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.731 5.387 -9.077 19.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.051 5.051 3 N -0.052 5.052 4 N -0.128 5.128 5 C -0.148 4.148 6 C 0.389 3.611 7 O -0.381 6.381 8 N -0.350 5.350 9 C -0.025 4.025 10 C 0.004 3.996 11 N -0.286 5.286 12 C -0.405 4.405 13 H 0.103 0.897 14 C -0.160 4.160 15 N -0.531 5.531 16 Si 0.701 3.299 17 H -0.211 1.211 18 H -0.227 1.227 19 H -0.189 1.189 20 C 0.010 3.990 21 C -0.224 4.224 22 C -0.262 4.262 23 N -0.103 5.103 24 H 0.124 0.876 25 H 0.134 0.866 26 H 0.132 0.868 27 H 0.242 0.758 28 H 0.102 0.898 29 H 0.086 0.914 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.111 0.889 34 H 0.122 0.878 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -17.140 5.026 -8.853 19.935 hybrid contribution 0.148 1.185 0.093 1.197 sum -16.992 6.210 -8.760 20.101 Atomic orbital electron populations 1.22535 0.68556 1.07154 1.06426 1.50263 1.11112 1.00752 1.42963 1.78919 0.96436 1.14067 1.15764 1.76152 1.09997 1.10286 1.16378 1.25527 0.93336 0.90245 1.05731 1.16136 0.80729 0.85743 0.78517 1.90858 1.85453 1.12703 1.49051 1.45855 1.04862 1.11636 1.72641 1.22474 0.82327 0.94417 1.03264 1.21344 0.85296 0.92628 1.00358 1.43506 1.25277 1.58164 1.01608 1.18748 1.37870 0.97300 0.86537 0.89694 1.25503 0.97512 0.97783 0.95191 1.69861 1.50337 1.34898 0.97977 0.87012 0.77006 0.87528 0.78375 1.21079 1.22701 1.18897 1.21189 0.87322 1.01085 0.89452 1.23078 1.04529 0.92160 1.02677 1.23380 1.05492 0.97475 0.99900 1.75101 1.02516 1.14214 1.18492 0.87650 0.86630 0.86771 0.75801 0.89816 0.91372 0.93080 0.92011 0.92497 0.88895 0.87796 0.90377 0.90741 0.89250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.34 11.62 59.85 0.70 1.04 16 2 N -0.14 -1.46 4.39 -16.65 -0.07 -1.53 16 3 N -0.06 -0.73 13.23 60.35 0.80 0.07 16 4 N -0.25 -3.73 12.26 32.10 0.39 -3.34 16 5 C 0.14 2.13 8.14 -156.24 -1.27 0.86 16 6 C 0.61 10.70 7.84 -12.25 -0.10 10.61 16 7 O -0.51 -10.44 17.10 5.34 0.09 -10.35 16 8 N -0.70 -11.62 5.55 -61.19 -0.34 -11.95 16 9 C 0.10 1.88 6.00 -4.04 -0.02 1.85 16 10 C 0.13 2.62 4.66 -4.04 -0.02 2.60 16 11 N -0.57 -12.80 2.39 -165.66 -0.40 -13.20 16 12 C -0.28 -7.36 8.96 -15.06 -0.13 -7.49 16 13 H 0.09 2.46 6.86 -52.49 -0.36 2.10 16 14 C 0.04 1.16 5.30 -17.43 -0.09 1.07 16 15 N -0.89 -26.43 13.97 55.49 0.78 -25.65 16 16 Si 0.87 21.27 25.08 -169.99 -4.26 17.00 16 17 H -0.28 -6.64 6.69 56.52 0.38 -6.26 16 18 H -0.30 -7.51 7.11 56.52 0.40 -7.11 16 19 H -0.26 -6.32 7.11 56.52 0.40 -5.92 16 20 C 0.12 2.30 6.56 -67.93 -0.45 1.85 16 21 C -0.19 -3.48 9.80 -26.70 -0.26 -3.74 16 22 C -0.22 -4.11 10.36 -26.70 -0.28 -4.39 16 23 N -0.25 -3.52 12.17 32.11 0.39 -3.13 16 24 H 0.11 0.21 8.14 -51.93 -0.42 -0.22 16 25 H 0.12 0.15 8.14 -51.93 -0.42 -0.28 16 26 H 0.11 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.41 6.01 8.22 -40.82 -0.34 5.68 16 28 H 0.08 1.82 8.14 -51.93 -0.42 1.40 16 29 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.05 0.90 8.07 -51.93 -0.42 0.48 16 31 H 0.06 1.36 3.40 -51.93 -0.18 1.18 16 32 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 33 H 0.09 1.59 8.14 -51.93 -0.42 1.16 16 34 H 0.10 2.20 6.44 -51.93 -0.33 1.86 16 35 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 36 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.09 1.86 8.14 -51.93 -0.42 1.44 16 LS Contribution 320.86 15.07 4.84 4.84 Total: -1.00 -33.80 320.86 -4.30 -38.10 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -4.59 Total: 4.88 kcal Atomic # 6 Polarization: 6.19 SS G_CDS: -1.93 Total: 4.26 kcal Atomic # 7 Polarization: -60.28 SS G_CDS: 1.55 Total: -58.73 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.09 Total: -10.35 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.26 Total: 17.00 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -33.80 -4.30 -38.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731878809.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.492 kcal (2) G-P(sol) polarization free energy of solvation -33.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 161.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 157.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds