Wall clock time and date at job start Tue Mar 31 2020 02:30:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.46390 * 2 1 4 4 C 1.53002 * 109.46895 * 119.99648 * 2 1 3 5 5 N 1.46504 * 109.46791 * 175.00149 * 4 2 1 6 6 C 1.36937 * 120.00103 * 180.02562 * 5 4 2 7 7 H 1.07994 * 119.99781 * 0.02562 * 6 5 4 8 8 C 1.38813 * 120.00112 * 179.97438 * 6 5 4 9 9 N 1.31618 * 119.99863 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 119.99971 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47209 * 60.00080 * 10 8 6 12 12 H 1.48501 * 109.46888 * 180.02562 * 10 8 6 13 13 H 1.48495 * 109.46874 * 299.99921 * 10 8 6 14 14 N 1.46500 * 109.46812 * 239.99878 * 2 1 3 15 15 C 1.34771 * 119.99705 * 85.00050 * 14 2 1 16 16 O 1.21282 * 120.00536 * 359.97438 * 15 14 2 17 17 C 1.50706 * 119.99799 * 179.97438 * 15 14 2 18 18 C 1.50698 * 109.47083 * 179.97438 * 17 15 14 19 19 C 1.38249 * 119.97530 * 270.28058 * 18 17 15 20 20 C 1.38194 * 120.02368 * 180.23999 * 19 18 17 21 21 C 1.38460 * 119.97497 * 359.45988 * 20 19 18 22 22 F 1.35105 * 120.02800 * 180.30394 * 21 20 19 23 23 C 1.38467 * 119.94896 * 0.28520 * 21 20 19 24 24 C 1.38197 * 119.97188 * 359.97438 * 23 21 20 25 25 H 1.09007 * 109.47196 * 299.99825 * 1 2 3 26 26 H 1.08993 * 109.47279 * 60.00523 * 1 2 3 27 27 H 1.09001 * 109.47228 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47422 * 295.00127 * 4 2 1 29 29 H 1.08999 * 109.47393 * 55.00601 * 4 2 1 30 30 H 0.97004 * 120.00070 * 0.02562 * 5 4 2 31 31 H 0.96999 * 120.00402 * 179.97438 * 9 8 6 32 32 H 0.96999 * 119.99655 * 264.99647 * 14 2 1 33 33 H 1.09006 * 109.46579 * 60.00135 * 17 15 14 34 34 H 1.08994 * 109.47339 * 300.00648 * 17 15 14 35 35 H 1.07998 * 119.98587 * 0.02562 * 19 18 17 36 36 H 1.08002 * 120.01531 * 179.74540 * 20 19 18 37 37 H 1.07998 * 120.01314 * 180.02562 * 23 21 20 38 38 H 1.07994 * 119.98607 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5001 -0.8263 1.1906 6 6 4.1839 -1.4387 2.2068 7 1 3.6468 -1.8445 3.0512 8 6 5.5673 -1.5387 2.1510 9 7 6.2218 -1.0445 1.1215 10 14 6.4999 -2.3747 3.5368 11 1 6.0433 -3.7821 3.6623 12 1 7.9547 -2.3504 3.2395 13 1 6.2433 -1.6556 4.8104 14 7 2.0183 -0.6906 -1.1962 15 6 2.1470 -0.0183 -2.3571 16 8 1.8581 1.1584 -2.4117 17 6 2.6498 -0.7286 -3.5875 18 6 2.6997 0.2395 -4.7412 19 6 1.5961 0.3975 -5.5587 20 6 1.6425 1.2813 -6.6200 21 6 2.7910 2.0171 -6.8578 22 9 2.8354 2.8861 -7.8914 23 6 3.8940 1.8620 -6.0352 24 6 3.8471 0.9736 -4.9777 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.7516 -0.1583 2.1370 29 1 1.6055 -1.7198 1.2953 30 1 3.9825 -0.4621 0.4319 31 1 7.1885 -1.1141 1.0826 32 1 2.2490 -1.6318 -1.1525 33 1 1.9775 -1.5509 -3.8325 34 1 3.6490 -1.1205 -3.3979 35 1 0.6985 -0.1727 -5.3699 36 1 0.7816 1.4016 -7.2610 37 1 4.7903 2.4357 -6.2195 38 1 4.7071 0.8527 -4.3358 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733021247.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:30:58 Heat of formation + Delta-G solvation = -75.898448 kcal Electronic energy + Delta-G solvation = -21085.134202 eV Core-core repulsion = 17648.026963 eV Total energy + Delta-G solvation = -3437.107240 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -49.89623 -41.06067 -39.68557 -37.61529 -35.40726 -33.74485 -32.84679 -32.07645 -31.43441 -28.14577 -27.38119 -24.54630 -24.01351 -23.27528 -21.92343 -21.23720 -19.21475 -18.64917 -18.02910 -17.44627 -17.34014 -16.64328 -16.57226 -16.31932 -15.91309 -15.38627 -15.22991 -15.06919 -14.69458 -14.47801 -14.32313 -13.97457 -13.62717 -13.55243 -13.16800 -13.01097 -12.81133 -12.73689 -12.64974 -12.53897 -12.18158 -11.91494 -11.87012 -11.67876 -10.98556 -10.82361 -10.04123 -9.96630 -9.53070 -8.99418 -7.93081 -5.22272 0.13362 0.30613 1.49990 1.52153 1.58198 1.75214 2.26918 2.57544 2.74054 3.29404 3.41296 3.68315 3.77203 3.81145 3.98133 4.04383 4.17291 4.25781 4.34134 4.34442 4.55554 4.64290 4.67355 4.83097 4.90193 4.96440 4.98628 5.05199 5.16101 5.16972 5.26554 5.33859 5.52176 5.55649 5.65747 5.94008 6.27885 6.68207 7.35513 7.36835 8.09234 8.33243 9.29652 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.021442 B = 0.003597 C = 0.003195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.527588 B = 7781.737180 C = 8761.329143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.140 3.860 3 H 0.055 0.945 4 C 0.145 3.855 5 N -0.743 5.743 6 C -0.247 4.247 7 H 0.078 0.922 8 C -0.071 4.071 9 N -0.967 5.967 10 Si 0.972 3.028 11 H -0.275 1.275 12 H -0.298 1.298 13 H -0.282 1.282 14 N -0.708 5.708 15 C 0.513 3.487 16 O -0.582 6.582 17 C -0.097 4.097 18 C -0.080 4.080 19 C -0.080 4.080 20 C -0.155 4.155 21 C 0.074 3.926 22 F -0.149 7.149 23 C -0.160 4.160 24 C -0.091 4.091 25 H 0.075 0.925 26 H 0.052 0.948 27 H 0.074 0.926 28 H 0.033 0.967 29 H 0.042 0.958 30 H 0.375 0.625 31 H 0.250 0.750 32 H 0.411 0.589 33 H 0.139 0.861 34 H 0.115 0.885 35 H 0.155 0.845 36 H 0.155 0.845 37 H 0.144 0.856 38 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.251 -0.917 -13.793 17.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.035 3.965 3 H 0.073 0.927 4 C 0.019 3.981 5 N -0.386 5.386 6 C -0.378 4.378 7 H 0.096 0.904 8 C -0.264 4.264 9 N -0.617 5.617 10 Si 0.801 3.199 11 H -0.201 1.201 12 H -0.225 1.225 13 H -0.208 1.208 14 N -0.359 5.359 15 C 0.301 3.699 16 O -0.462 6.462 17 C -0.137 4.137 18 C -0.081 4.081 19 C -0.097 4.097 20 C -0.173 4.173 21 C 0.055 3.945 22 F -0.128 7.128 23 C -0.179 4.179 24 C -0.109 4.109 25 H 0.094 0.906 26 H 0.071 0.929 27 H 0.093 0.907 28 H 0.051 0.949 29 H 0.060 0.940 30 H 0.207 0.793 31 H 0.059 0.941 32 H 0.247 0.753 33 H 0.156 0.844 34 H 0.133 0.867 35 H 0.172 0.828 36 H 0.173 0.827 37 H 0.162 0.838 38 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -11.453 -0.145 -13.683 17.844 hybrid contribution 1.284 -0.142 0.423 1.360 sum -10.168 -0.287 -13.259 16.712 Atomic orbital electron populations 1.21988 0.92770 1.03137 1.02460 1.21040 0.95272 0.95989 0.84216 0.92710 1.21126 0.84043 0.98024 0.94947 1.42521 1.01844 1.69938 1.24345 1.19594 0.89914 1.28521 0.99794 0.90436 1.25516 0.97472 1.02962 1.00426 1.69805 1.07036 1.52640 1.32227 0.85242 0.77083 0.78677 0.78904 1.20080 1.22454 1.20837 1.45970 1.66403 1.14654 1.08912 1.21002 0.76770 0.86939 0.85226 1.90682 1.52053 1.17664 1.85819 1.20723 1.05743 0.98118 0.89083 1.19593 0.94299 0.98025 0.96142 1.21140 0.98252 0.97315 0.93041 1.21347 0.97701 0.97846 1.00420 1.17947 0.96552 0.92413 0.87588 1.91464 1.97071 1.67717 1.56543 1.21276 0.98873 1.01325 0.96415 1.21106 0.98807 0.94724 0.96293 0.90616 0.92909 0.90681 0.94865 0.94022 0.79298 0.94093 0.75317 0.84360 0.86677 0.82758 0.82732 0.83792 0.84893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.55 9.48 71.98 0.68 -2.87 16 2 C 0.14 4.45 2.73 44.99 0.12 4.58 16 3 H 0.05 2.10 7.58 -2.39 -0.02 2.08 16 4 C 0.15 5.31 5.82 86.38 0.50 5.82 16 5 N -0.74 -35.67 5.43 -343.45 -1.87 -37.54 16 6 C -0.25 -13.15 9.99 84.03 0.84 -12.31 16 7 H 0.08 3.94 7.83 -2.91 -0.02 3.91 16 8 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 9 N -0.97 -57.37 13.06 21.65 0.28 -57.08 16 10 Si 0.97 44.70 29.55 68.60 2.03 46.73 16 11 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 12 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 13 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 14 N -0.71 -20.52 4.52 -442.52 -2.00 -22.52 16 15 C 0.51 15.19 7.79 87.66 0.68 15.88 16 16 O -0.58 -21.89 15.70 -3.04 -0.05 -21.94 16 17 C -0.10 -2.06 5.83 29.10 0.17 -1.89 16 18 C -0.08 -1.87 4.37 -19.86 -0.09 -1.96 16 19 C -0.08 -1.63 9.70 22.26 0.22 -1.41 16 20 C -0.15 -3.21 10.03 22.31 0.22 -2.99 16 21 C 0.07 1.79 7.30 22.38 0.16 1.95 16 22 F -0.15 -3.70 17.27 44.97 0.78 -2.93 16 23 C -0.16 -3.87 10.03 22.31 0.22 -3.65 16 24 C -0.09 -2.29 9.70 22.26 0.22 -2.07 16 25 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 26 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.04 1.41 8.14 -2.39 -0.02 1.40 16 30 H 0.37 19.47 7.33 -92.71 -0.68 18.79 16 31 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 32 H 0.41 10.79 8.60 -92.71 -0.80 10.00 16 33 H 0.14 1.90 8.09 -2.38 -0.02 1.88 16 34 H 0.12 2.34 8.09 -2.39 -0.02 2.32 16 35 H 0.15 2.29 8.06 -2.91 -0.02 2.27 16 36 H 0.15 2.42 8.06 -2.91 -0.02 2.40 16 37 H 0.14 3.01 8.06 -2.91 -0.02 2.98 16 38 H 0.13 3.25 8.06 -2.91 -0.02 3.22 16 Total: -1.00 -68.66 333.88 3.20 -65.46 By element: Atomic # 1 Polarization: 34.64 SS G_CDS: -0.40 Total: 34.24 kcal Atomic # 6 Polarization: -8.84 SS G_CDS: 4.42 Total: -4.42 kcal Atomic # 7 Polarization: -113.57 SS G_CDS: -3.58 Total: -117.15 kcal Atomic # 8 Polarization: -21.89 SS G_CDS: -0.05 Total: -21.94 kcal Atomic # 9 Polarization: -3.70 SS G_CDS: 0.78 Total: -2.93 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -68.66 3.20 -65.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733021247.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.440 kcal (2) G-P(sol) polarization free energy of solvation -68.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds