Wall clock time and date at job start Tue Mar 31 2020 02:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47086 * 2 1 4 4 C 1.52998 * 109.47350 * 239.99545 * 2 1 3 5 5 N 1.46491 * 109.47310 * 185.00083 * 4 2 1 6 6 C 1.46500 * 120.00225 * 270.00484 * 5 4 2 7 7 C 1.34776 * 120.00430 * 89.99968 * 5 4 2 8 8 O 1.21572 * 119.99600 * 4.61714 * 7 5 4 9 9 C 1.47725 * 120.00445 * 184.62062 * 7 5 4 10 10 C 1.39653 * 120.11432 * 328.04063 * 9 7 5 11 11 C 1.37833 * 119.87666 * 179.78998 * 10 9 7 12 12 C 1.38659 * 120.12162 * 0.49303 * 11 10 9 13 13 F 1.35094 * 119.88260 * 179.71545 * 12 11 10 14 14 C 1.38661 * 120.23637 * 359.74212 * 12 11 10 15 15 C 1.37835 * 120.11567 * 0.02562 * 14 12 11 16 16 N 1.46500 * 109.46814 * 119.99704 * 2 1 3 17 17 C 1.36938 * 120.00134 * 274.99995 * 16 2 1 18 18 H 1.08002 * 119.99845 * 0.02562 * 17 16 2 19 19 C 1.38808 * 120.00205 * 179.97438 * 17 16 2 20 20 N 1.31624 * 120.00110 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00218 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47067 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47361 * 120.00157 * 21 19 17 24 24 H 1.48496 * 109.47167 * 240.00334 * 21 19 17 25 25 H 1.09000 * 109.47342 * 300.00276 * 1 2 3 26 26 H 1.09004 * 109.47058 * 60.00391 * 1 2 3 27 27 H 1.09003 * 109.46988 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46898 * 65.00043 * 4 2 1 29 29 H 1.09003 * 109.46936 * 305.00484 * 4 2 1 30 30 H 1.09005 * 109.47326 * 274.24981 * 6 5 4 31 31 H 1.09005 * 109.47266 * 34.24962 * 6 5 4 32 32 H 1.08996 * 109.47884 * 154.24897 * 6 5 4 33 33 H 1.08001 * 120.05764 * 0.02965 * 10 9 7 34 34 H 1.07996 * 119.94299 * 180.20790 * 11 10 9 35 35 H 1.07996 * 119.93796 * 179.97438 * 14 12 11 36 36 H 1.08001 * 120.05783 * 179.97438 * 15 14 12 37 37 H 0.97001 * 119.99954 * 95.00195 * 16 2 1 38 38 H 0.96995 * 119.99647 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 3.5000 -0.8265 -1.1905 6 6 4.3344 0.2340 -1.7611 7 6 4.0758 -1.8987 -0.6114 8 8 3.3867 -2.8176 -0.2130 9 6 5.5442 -1.9573 -0.4606 10 6 6.3707 -1.3503 -1.4086 11 6 7.7400 -1.4043 -1.2609 12 6 8.2974 -2.0686 -0.1789 13 9 9.6403 -2.1234 -0.0419 14 6 7.4815 -2.6772 0.7626 15 6 6.1109 -2.6252 0.6270 16 7 2.0183 -0.6906 1.1962 17 6 2.1490 -0.0074 2.3758 18 1 1.8918 1.0404 2.4243 19 6 2.6112 -0.6618 3.5094 20 7 2.9242 -1.9389 3.4504 21 14 2.7889 0.2699 5.1186 22 1 2.3740 1.6822 4.9214 23 1 1.9277 -0.3586 6.1523 24 1 4.2055 0.2270 5.5617 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 1.7517 -0.1584 -2.1369 29 1 1.6054 -1.7199 -1.2950 30 1 4.4800 0.0487 -2.8254 31 1 3.8424 1.1969 -1.6239 32 1 5.3016 0.2454 -1.2587 33 1 5.9375 -0.8361 -2.2539 34 1 8.3800 -0.9323 -1.9915 35 1 7.9209 -3.1937 1.6032 36 1 5.4763 -3.0999 1.3607 37 1 2.2490 -1.6317 1.1527 38 1 3.2474 -2.3961 4.2424 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734313028.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:28:25 Heat of formation + Delta-G solvation = -20.518986 kcal Electronic energy + Delta-G solvation = -22382.168595 eV Core-core repulsion = 18947.462789 eV Total energy + Delta-G solvation = -3434.705806 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -48.90952 -40.12395 -37.99941 -35.94331 -34.52158 -32.10600 -31.08112 -30.50468 -28.58894 -27.12151 -25.77248 -23.65128 -22.86491 -22.76051 -20.16526 -19.27627 -17.55530 -17.42670 -16.85634 -16.37880 -15.63978 -15.43169 -15.07292 -14.77943 -14.41442 -13.99172 -13.70931 -13.49260 -13.19025 -13.12834 -12.69958 -12.47110 -12.19339 -12.11165 -11.93620 -11.68910 -11.39126 -11.20865 -10.82288 -10.76652 -10.64342 -10.36353 -9.98931 -9.56298 -9.36964 -9.02064 -8.84340 -8.57977 -8.12459 -6.82551 -5.63664 -2.92801 0.92347 1.31037 3.11382 3.36296 3.46184 3.51735 3.53827 3.96560 4.23522 4.65223 4.69014 4.84241 4.87491 5.19146 5.36303 5.38779 5.43363 5.48268 5.63165 5.74539 5.85180 5.87980 5.97146 6.02655 6.06543 6.11633 6.28276 6.35359 6.39556 6.48494 6.66590 6.80871 6.89529 6.95295 7.15503 7.77007 7.80501 8.53043 8.70873 9.65783 10.27582 10.65574 11.56949 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.014032 B = 0.006746 C = 0.005085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.904400 B = 4149.638018 C = 5505.540513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.153 3.847 3 H 0.044 0.956 4 C 0.110 3.890 5 N -0.602 5.602 6 C 0.065 3.935 7 C 0.568 3.432 8 O -0.513 6.513 9 C -0.128 4.128 10 C -0.080 4.080 11 C -0.170 4.170 12 C 0.110 3.890 13 F -0.142 7.142 14 C -0.162 4.162 15 C -0.019 4.019 16 N -0.721 5.721 17 C -0.236 4.236 18 H 0.065 0.935 19 C -0.012 4.012 20 N -0.921 5.921 21 Si 0.898 3.102 22 H -0.282 1.282 23 H -0.293 1.293 24 H -0.293 1.293 25 H 0.055 0.945 26 H 0.035 0.965 27 H 0.048 0.952 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.053 0.947 31 H 0.068 0.932 32 H 0.086 0.914 33 H 0.150 0.850 34 H 0.136 0.864 35 H 0.139 0.861 36 H 0.153 0.847 37 H 0.396 0.604 38 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.507 2.713 -13.361 15.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.042 3.958 3 H 0.062 0.938 4 C -0.013 4.013 5 N -0.335 5.335 6 C -0.078 4.078 7 C 0.356 3.644 8 O -0.388 6.388 9 C -0.131 4.131 10 C -0.099 4.099 11 C -0.188 4.188 12 C 0.091 3.909 13 F -0.120 7.120 14 C -0.180 4.180 15 C -0.038 4.038 16 N -0.366 5.366 17 C -0.368 4.368 18 H 0.083 0.917 19 C -0.209 4.209 20 N -0.569 5.569 21 Si 0.730 3.270 22 H -0.208 1.208 23 H -0.220 1.220 24 H -0.221 1.221 25 H 0.074 0.926 26 H 0.054 0.946 27 H 0.067 0.933 28 H 0.090 0.910 29 H 0.100 0.900 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.104 0.896 33 H 0.167 0.833 34 H 0.154 0.846 35 H 0.157 0.843 36 H 0.170 0.830 37 H 0.234 0.766 38 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 7.193 2.319 -13.013 15.048 hybrid contribution 0.429 0.445 1.136 1.294 sum 7.622 2.765 -11.876 14.380 Atomic orbital electron populations 1.22406 0.99017 1.01033 0.99957 1.20648 0.92071 0.95583 0.87502 0.93839 1.21868 0.78831 1.02327 0.98315 1.47407 1.06819 1.20646 1.58579 1.22340 0.96923 0.91419 0.97153 1.17965 0.86908 0.82283 0.77212 1.90794 1.63836 1.37021 1.47192 1.20063 0.93900 1.01701 0.97432 1.21762 0.92457 0.96476 0.99162 1.20988 0.95766 1.03364 0.98727 1.17960 0.76821 0.99587 0.96533 1.91484 1.30098 1.94696 1.95753 1.21146 0.93754 1.03053 1.00094 1.21318 0.93756 0.93020 0.95697 1.42664 1.77659 1.11585 1.04721 1.19238 1.36310 0.93652 0.87600 0.91659 1.24712 1.02576 0.95919 0.97666 1.69740 1.50708 1.08308 1.28182 0.86249 0.77200 0.78803 0.84743 1.20787 1.22014 1.22075 0.92634 0.94582 0.93321 0.90955 0.89993 0.92823 0.91328 0.89613 0.83260 0.84577 0.84293 0.82953 0.76582 0.93856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.96 9.49 37.16 0.35 -2.61 16 2 C 0.15 3.07 3.20 -67.93 -0.22 2.85 16 3 H 0.04 0.87 8.08 -51.93 -0.42 0.45 16 4 C 0.11 1.83 5.17 -4.05 -0.02 1.81 16 5 N -0.60 -9.97 2.77 -182.74 -0.51 -10.48 16 6 C 0.06 0.77 8.80 59.85 0.53 1.30 16 7 C 0.57 11.07 6.61 -12.38 -0.08 10.99 16 8 O -0.51 -12.09 14.33 5.30 0.08 -12.02 16 9 C -0.13 -2.15 5.48 -104.97 -0.57 -2.72 16 10 C -0.08 -1.02 7.43 -39.20 -0.29 -1.31 16 11 C -0.17 -2.01 10.01 -39.57 -0.40 -2.41 16 12 C 0.11 1.50 7.31 -39.27 -0.29 1.21 16 13 F -0.14 -1.90 17.26 2.25 0.04 -1.86 16 14 C -0.16 -2.37 10.01 -39.57 -0.40 -2.77 16 15 C -0.02 -0.33 9.60 -39.20 -0.38 -0.71 16 16 N -0.72 -18.55 4.52 -53.43 -0.24 -18.79 16 17 C -0.24 -6.67 9.93 -15.06 -0.15 -6.81 16 18 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 19 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 20 N -0.92 -28.21 13.06 55.49 0.72 -27.49 16 21 Si 0.90 22.77 29.55 -169.99 -5.02 17.74 16 22 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 23 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 24 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 25 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 26 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.07 0.92 8.07 -51.93 -0.42 0.50 16 29 H 0.08 1.50 7.36 -51.93 -0.38 1.11 16 30 H 0.05 0.47 7.44 -51.93 -0.39 0.08 16 31 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 32 H 0.09 1.02 4.71 -51.93 -0.24 0.78 16 33 H 0.15 1.47 4.78 -52.49 -0.25 1.22 16 34 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 35 H 0.14 1.79 8.06 -52.49 -0.42 1.37 16 36 H 0.15 3.03 7.95 -52.49 -0.42 2.61 16 37 H 0.40 11.14 5.22 -40.82 -0.21 10.93 16 38 H 0.25 7.46 8.31 -40.82 -0.34 7.13 16 LS Contribution 319.76 15.07 4.82 4.82 Total: -1.00 -33.56 319.76 -6.94 -40.49 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -4.81 Total: 9.23 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: -2.01 Total: -1.65 kcal Atomic # 7 Polarization: -56.74 SS G_CDS: -0.02 Total: -56.76 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: 0.08 Total: -12.02 kcal Atomic # 9 Polarization: -1.90 SS G_CDS: 0.04 Total: -1.86 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.74 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -33.56 -6.94 -40.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734313028.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.975 kcal (2) G-P(sol) polarization free energy of solvation -33.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds