Wall clock time and date at job start Tue Mar 31 2020 02:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50699 * 109.46847 * 2 1 4 4 O 1.21277 * 120.00620 * 359.97438 * 3 2 1 5 5 N 1.34780 * 119.99786 * 180.02562 * 3 2 1 6 6 C 1.46496 * 120.00061 * 179.97438 * 5 3 2 7 7 C 1.50700 * 109.47151 * 180.02562 * 6 5 3 8 8 C 1.38221 * 120.01073 * 260.01872 * 7 6 5 9 9 C 1.38220 * 120.02576 * 179.72487 * 8 7 6 10 10 C 1.38277 * 120.04953 * 0.51339 * 9 8 7 11 11 C 1.50700 * 119.98580 * 179.77046 * 10 9 8 12 12 N 1.46498 * 109.46769 * 269.71637 * 11 10 9 13 13 C 1.36943 * 119.99752 * 179.72432 * 12 11 10 14 14 H 1.08002 * 119.99793 * 0.27665 * 13 12 11 15 15 C 1.38811 * 120.00012 * 180.27737 * 13 12 11 16 16 N 1.31611 * 120.00081 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 119.99814 * 0.02562 * 15 13 12 18 18 H 1.48501 * 109.47483 * 90.00178 * 17 15 13 19 19 H 1.48498 * 109.47011 * 210.00042 * 17 15 13 20 20 H 1.48502 * 109.47495 * 329.99664 * 17 15 13 21 21 C 1.38170 * 120.02576 * 359.48562 * 10 9 8 22 22 C 1.38441 * 120.01389 * 80.00236 * 7 6 5 23 23 F 1.35100 * 120.02602 * 359.97438 * 22 7 6 24 24 H 1.09000 * 109.47258 * 300.00101 * 1 2 3 25 25 H 1.08995 * 109.47366 * 60.00317 * 1 2 3 26 26 H 1.08996 * 109.46846 * 180.02562 * 1 2 3 27 27 H 1.08991 * 109.47422 * 239.99712 * 2 1 3 28 28 H 1.09002 * 109.47232 * 119.99322 * 2 1 3 29 29 H 0.97003 * 120.00316 * 359.97438 * 5 3 2 30 30 H 1.09000 * 109.47450 * 60.00120 * 6 5 3 31 31 H 1.09004 * 109.47141 * 299.99581 * 6 5 3 32 32 H 1.07997 * 119.98840 * 359.97438 * 8 7 6 33 33 H 1.07998 * 119.98077 * 180.25523 * 9 8 7 34 34 H 1.09004 * 109.47210 * 149.71995 * 11 10 9 35 35 H 1.08994 * 109.47121 * 29.71965 * 11 10 9 36 36 H 0.97001 * 120.00384 * 0.02562 * 12 11 10 37 37 H 0.97008 * 120.00329 * 179.97438 * 16 15 13 38 38 H 1.07998 * 120.01636 * 180.23671 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2443 2.3427 -0.0005 5 7 3.3574 1.6671 -0.0005 6 6 3.8457 3.0483 -0.0011 7 6 5.3527 3.0483 -0.0022 8 6 6.0449 3.2559 1.1760 9 6 7.4271 3.2503 1.1763 10 6 8.1190 3.0477 -0.0037 11 6 9.6260 3.0470 -0.0025 12 7 10.1150 4.4070 -0.2423 13 6 11.4615 4.6538 -0.2792 14 1 12.1629 3.8451 -0.1360 15 6 11.9249 5.9434 -0.5007 16 7 13.2190 6.1806 -0.5367 17 14 10.7117 7.3422 -0.7477 18 1 10.3848 7.9519 0.5664 19 1 11.3149 8.3700 -1.6337 20 1 9.4710 6.8170 -1.3721 21 6 7.4292 2.8399 -1.1827 22 6 6.0443 2.8400 -1.1833 23 9 5.3687 2.6361 -2.3354 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5137 0.8901 29 1 3.9878 0.9299 -0.0005 30 1 3.4827 3.5624 0.8889 31 1 3.4821 3.5619 -0.8912 32 1 5.5056 3.4186 2.0974 33 1 7.9672 3.4085 2.0980 34 1 9.9897 2.3861 -0.7894 35 1 9.9885 2.6955 0.9634 36 1 9.4851 5.1334 -0.3706 37 1 13.5428 7.0818 -0.6918 38 1 7.9697 2.6778 -2.1035 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734639252.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:45 Heat of formation + Delta-G solvation = -55.463764 kcal Electronic energy + Delta-G solvation = -20825.327728 eV Core-core repulsion = 17389.106603 eV Total energy + Delta-G solvation = -3436.221125 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.95693 -40.08078 -39.21606 -35.79462 -34.54050 -33.15548 -32.16355 -30.79617 -30.47363 -27.67600 -25.23875 -23.75910 -22.93237 -22.14390 -20.92443 -20.58431 -18.04799 -17.61616 -16.77647 -16.71302 -16.36603 -15.88962 -15.62595 -15.26508 -14.66475 -14.27621 -14.11411 -14.06985 -13.76382 -13.45383 -13.07217 -12.84515 -12.69119 -12.37413 -12.23039 -12.08379 -12.05079 -11.64158 -11.50574 -11.41509 -10.92049 -10.75970 -10.23756 -10.16760 -9.67193 -9.36551 -9.00391 -8.97255 -8.67650 -7.34479 -5.84149 -3.21515 0.96352 1.16818 2.39308 2.95702 3.33922 3.37714 3.41957 3.57549 4.14717 4.31365 4.47217 4.53307 4.63105 4.73947 4.74872 4.93594 5.03062 5.18108 5.31028 5.41237 5.43904 5.45596 5.49767 5.59292 5.60487 5.78647 5.87731 5.93114 6.00003 6.09831 6.20961 6.24418 6.37831 6.74519 6.84513 7.21074 7.89398 7.95522 8.33923 9.11582 9.83739 10.02378 11.33638 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.038038 B = 0.003127 C = 0.003084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.919799 B = 8952.281340 C = 9077.873012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.144 4.144 3 C 0.510 3.490 4 O -0.543 6.543 5 N -0.726 5.726 6 C 0.166 3.834 7 C -0.157 4.157 8 C -0.076 4.076 9 C -0.117 4.117 10 C -0.043 4.043 11 C 0.189 3.811 12 N -0.750 5.750 13 C -0.250 4.250 14 H 0.092 0.908 15 C 0.008 3.992 16 N -0.931 5.931 17 Si 0.883 3.117 18 H -0.283 1.283 19 H -0.289 1.289 20 H -0.277 1.277 21 C -0.141 4.141 22 C 0.110 3.890 23 F -0.138 7.138 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.402 0.598 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.132 0.868 33 H 0.135 0.865 34 H 0.040 0.960 35 H 0.042 0.958 36 H 0.363 0.637 37 H 0.261 0.739 38 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.531 -13.286 2.651 25.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.184 4.184 3 C 0.297 3.703 4 O -0.420 6.420 5 N -0.378 5.378 6 C 0.044 3.956 7 C -0.158 4.158 8 C -0.094 4.094 9 C -0.135 4.135 10 C -0.044 4.044 11 C 0.063 3.937 12 N -0.396 5.396 13 C -0.379 4.379 14 H 0.110 0.890 15 C -0.188 4.188 16 N -0.578 5.578 17 Si 0.713 3.287 18 H -0.209 1.209 19 H -0.216 1.216 20 H -0.203 1.203 21 C -0.160 4.160 22 C 0.090 3.910 23 F -0.117 7.117 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.112 0.888 28 H 0.111 0.889 29 H 0.236 0.764 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.150 0.850 33 H 0.153 0.847 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.196 0.804 37 H 0.071 0.929 38 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -21.867 -12.647 2.604 25.395 hybrid contribution -0.369 0.794 -0.477 0.997 sum -22.237 -11.853 2.127 25.288 Atomic orbital electron populations 1.21527 0.92964 1.01590 1.03392 1.21638 0.98716 0.93648 1.04444 1.20835 0.81890 0.91989 0.75592 1.90708 1.55275 1.46622 1.49365 1.46139 1.07239 1.08688 1.75774 1.20032 0.88633 0.83585 1.03397 1.19776 0.95181 1.07822 0.93028 1.20939 0.94150 0.97675 0.96664 1.21258 0.93633 0.99854 0.98776 1.20308 0.97670 0.94477 0.91950 1.19696 0.85339 0.88966 0.99739 1.42668 1.04836 1.03553 1.88553 1.19032 0.81404 0.95129 1.42353 0.88996 1.24661 0.95550 0.97071 1.01524 1.69694 1.11420 1.20729 1.55949 0.86571 0.80991 0.83126 0.78012 1.20918 1.21569 1.20270 1.21179 0.91683 1.03015 1.00129 1.17548 0.90015 1.02058 0.81339 1.91493 1.80288 1.92354 1.47536 0.91984 0.91967 0.92053 0.88845 0.88858 0.76359 0.90172 0.90488 0.84989 0.84718 0.94223 0.93972 0.80388 0.92907 0.84278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.96 9.20 37.16 0.34 -0.62 16 2 C -0.14 -0.94 6.42 -27.88 -0.18 -1.12 16 3 C 0.51 5.23 7.83 -10.98 -0.09 5.15 16 4 O -0.54 -7.79 15.98 5.56 0.09 -7.70 16 5 N -0.73 -6.70 5.55 -61.47 -0.34 -7.04 16 6 C 0.17 1.79 5.52 -5.20 -0.03 1.76 16 7 C -0.16 -1.78 5.25 -104.55 -0.55 -2.33 16 8 C -0.08 -0.82 9.67 -39.59 -0.38 -1.20 16 9 C -0.12 -1.48 9.70 -39.57 -0.38 -1.87 16 10 C -0.04 -0.64 5.25 -104.63 -0.55 -1.19 16 11 C 0.19 3.41 6.38 -5.19 -0.03 3.38 16 12 N -0.75 -17.27 5.40 -61.09 -0.33 -17.60 16 13 C -0.25 -6.90 10.47 -15.06 -0.16 -7.05 16 14 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 15 C 0.01 0.24 5.50 -17.43 -0.10 0.14 16 16 N -0.93 -28.80 13.97 55.49 0.78 -28.03 16 17 Si 0.88 21.93 27.74 -169.99 -4.71 17.21 16 18 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 19 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 20 H -0.28 -6.54 6.52 56.52 0.37 -6.17 16 21 C -0.14 -1.99 9.68 -39.51 -0.38 -2.38 16 22 C 0.11 1.44 7.25 -39.41 -0.29 1.15 16 23 F -0.14 -1.87 16.66 2.25 0.04 -1.83 16 24 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 25 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 26 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.40 2.89 8.46 -40.82 -0.35 2.54 16 30 H 0.08 0.83 8.01 -51.93 -0.42 0.42 16 31 H 0.08 0.94 7.95 -51.93 -0.41 0.52 16 32 H 0.13 1.12 8.04 -52.49 -0.42 0.70 16 33 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 34 H 0.04 0.71 8.09 -51.93 -0.42 0.29 16 35 H 0.04 0.74 8.08 -51.93 -0.42 0.32 16 36 H 0.36 8.34 5.52 -40.82 -0.23 8.11 16 37 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 38 H 0.14 1.94 8.06 -52.49 -0.42 1.52 16 LS Contribution 331.41 15.07 4.99 4.99 Total: -1.00 -33.01 331.41 -7.47 -40.48 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -5.21 Total: 5.69 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: -2.77 Total: -6.18 kcal Atomic # 7 Polarization: -52.77 SS G_CDS: 0.10 Total: -52.67 kcal Atomic # 8 Polarization: -7.79 SS G_CDS: 0.09 Total: -7.70 kcal Atomic # 9 Polarization: -1.87 SS G_CDS: 0.04 Total: -1.83 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.71 Total: 17.21 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.01 -7.47 -40.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734639252.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.984 kcal (2) G-P(sol) polarization free energy of solvation -33.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds