Wall clock time and date at job start Tue Mar 31 2020 02:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.46887 * 2 1 4 4 C 1.52999 * 109.47200 * 239.99680 * 2 1 3 5 5 N 1.46497 * 109.46992 * 184.99961 * 4 2 1 6 6 C 1.34777 * 119.99525 * 179.97438 * 5 4 2 7 7 O 1.21283 * 120.00463 * 0.02562 * 6 5 4 8 8 C 1.50700 * 119.99675 * 179.72583 * 6 5 4 9 9 C 1.50703 * 109.47148 * 180.28037 * 8 6 5 10 10 C 1.38273 * 119.98395 * 269.72400 * 9 8 6 11 11 C 1.38223 * 120.05046 * 179.72566 * 10 9 8 12 12 C 1.38226 * 120.02222 * 0.54640 * 11 10 9 13 13 C 1.38434 * 119.97337 * 359.72872 * 12 11 10 14 14 F 1.35105 * 120.02256 * 180.02562 * 13 12 11 15 15 C 1.38172 * 119.99155 * 89.99616 * 9 8 6 16 16 N 1.46501 * 109.47053 * 119.99665 * 2 1 3 17 17 C 1.36938 * 120.00226 * 275.00057 * 16 2 1 18 18 H 1.08003 * 119.99566 * 359.97438 * 17 16 2 19 19 C 1.38807 * 120.00578 * 180.02562 * 17 16 2 20 20 N 1.31630 * 119.99516 * 359.97438 * 19 17 16 21 21 Si 1.86792 * 120.00700 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47139 * 89.99661 * 21 19 17 23 23 H 1.48497 * 109.47830 * 210.00357 * 21 19 17 24 24 H 1.48509 * 109.46944 * 330.00365 * 21 19 17 25 25 H 1.09001 * 109.46990 * 300.00107 * 1 2 3 26 26 H 1.08994 * 109.47308 * 60.00286 * 1 2 3 27 27 H 1.09003 * 109.47254 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.46838 * 64.99849 * 4 2 1 29 29 H 1.09001 * 109.46617 * 305.00184 * 4 2 1 30 30 H 0.97000 * 120.00580 * 0.02562 * 5 4 2 31 31 H 1.09009 * 109.47352 * 300.27556 * 8 6 5 32 32 H 1.08998 * 109.47585 * 60.27844 * 8 6 5 33 33 H 1.08005 * 119.97167 * 359.97438 * 10 9 8 34 34 H 1.07993 * 119.98949 * 180.27564 * 11 10 9 35 35 H 1.08005 * 120.01185 * 179.75037 * 12 11 10 36 36 H 1.08008 * 120.01077 * 359.97438 * 15 9 8 37 37 H 0.96996 * 119.99960 * 95.00040 * 16 2 1 38 38 H 0.97001 * 119.99721 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8264 -1.1905 6 6 4.1729 -1.4293 -2.1906 7 8 3.5699 -1.8843 -3.1394 8 6 5.6753 -1.5319 -2.1332 9 6 6.1781 -2.2380 -3.3660 10 6 6.3206 -3.6134 -3.3649 11 6 6.7762 -4.2630 -4.4967 12 6 7.1006 -3.5370 -5.6273 13 6 6.9638 -2.1595 -5.6277 14 9 7.2801 -1.4490 -6.7324 15 6 6.5018 -1.5103 -4.4951 16 7 2.0183 -0.6905 1.1962 17 6 2.1491 -0.0074 2.3758 18 1 1.8926 1.0406 2.4241 19 6 2.6123 -0.6615 3.5091 20 7 2.9253 -1.9386 3.4500 21 14 2.7914 0.2705 5.1180 22 1 1.5240 0.1795 5.8865 23 1 3.8963 -0.3224 5.9134 24 1 3.0961 1.6958 4.8331 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.7516 -0.1584 -2.1369 29 1 1.6053 -1.7198 -1.2950 30 1 3.9824 -0.4628 -0.4315 31 1 6.1064 -0.5318 -2.0862 32 1 5.9675 -2.0955 -1.2471 33 1 6.0719 -4.1809 -2.4802 34 1 6.8829 -5.3376 -4.4962 35 1 7.4605 -4.0444 -6.5103 36 1 6.3942 -0.4356 -4.4944 37 1 2.2490 -1.6317 1.1527 38 1 3.2494 -2.3957 4.2419 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752918962.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:32:25 Heat of formation + Delta-G solvation = -75.818735 kcal Electronic energy + Delta-G solvation = -20956.448910 eV Core-core repulsion = 17519.345127 eV Total energy + Delta-G solvation = -3437.103783 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.89719 -41.00691 -39.62359 -37.85945 -35.14295 -33.96273 -33.43186 -31.49714 -30.59833 -29.08930 -26.75074 -25.56358 -23.70481 -22.97024 -21.70453 -21.12892 -19.34457 -18.35505 -17.89916 -17.44885 -17.14061 -16.98165 -16.72437 -16.57187 -16.15816 -15.52268 -15.27951 -14.92046 -14.60000 -14.35395 -14.18090 -13.84521 -13.63133 -13.48784 -13.09875 -13.04627 -12.87977 -12.77719 -12.53951 -12.47304 -12.16877 -11.99791 -11.69154 -11.62897 -11.01445 -10.89368 -9.97693 -9.91058 -9.62908 -9.00501 -7.89828 -5.18621 0.17966 0.26137 1.51650 1.53098 1.60413 1.69824 2.27865 2.59439 2.74799 3.24351 3.44637 3.62712 3.83243 3.89545 3.98497 4.07330 4.12373 4.26722 4.34638 4.41918 4.49960 4.63406 4.65947 4.75290 4.86590 4.95794 5.07308 5.10225 5.15269 5.27112 5.35728 5.44152 5.52679 5.58603 5.62705 5.95236 6.31106 6.65076 7.30467 7.38820 8.10754 8.35728 9.32744 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.024169 B = 0.003351 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.233755 B = 8354.068404 C = 8917.068048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.160 3.840 3 H 0.060 0.940 4 C 0.124 3.876 5 N -0.712 5.712 6 C 0.511 3.489 7 O -0.583 6.583 8 C -0.100 4.100 9 C -0.044 4.044 10 C -0.127 4.127 11 C -0.089 4.089 12 C -0.158 4.158 13 C 0.076 3.924 14 F -0.150 7.150 15 C -0.153 4.153 16 N -0.731 5.731 17 C -0.234 4.234 18 H 0.077 0.923 19 C -0.069 4.069 20 N -0.966 5.966 21 Si 0.966 3.034 22 H -0.295 1.295 23 H -0.299 1.299 24 H -0.269 1.269 25 H 0.044 0.956 26 H 0.072 0.928 27 H 0.041 0.959 28 H 0.077 0.923 29 H 0.048 0.952 30 H 0.412 0.588 31 H 0.129 0.871 32 H 0.124 0.876 33 H 0.138 0.862 34 H 0.161 0.839 35 H 0.154 0.846 36 H 0.138 0.862 37 H 0.373 0.627 38 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.262 -0.269 -14.792 16.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.051 3.949 3 H 0.078 0.922 4 C -0.001 4.001 5 N -0.363 5.363 6 C 0.299 3.701 7 O -0.464 6.464 8 C -0.140 4.140 9 C -0.045 4.045 10 C -0.145 4.145 11 C -0.107 4.107 12 C -0.177 4.177 13 C 0.057 3.943 14 F -0.128 7.128 15 C -0.171 4.171 16 N -0.372 5.372 17 C -0.366 4.366 18 H 0.095 0.905 19 C -0.262 4.262 20 N -0.616 5.616 21 Si 0.796 3.204 22 H -0.223 1.223 23 H -0.226 1.226 24 H -0.193 1.193 25 H 0.063 0.937 26 H 0.091 0.909 27 H 0.060 0.940 28 H 0.095 0.905 29 H 0.067 0.933 30 H 0.249 0.751 31 H 0.147 0.853 32 H 0.142 0.858 33 H 0.156 0.844 34 H 0.179 0.821 35 H 0.172 0.828 36 H 0.156 0.844 37 H 0.206 0.794 38 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 7.840 -0.382 -15.379 17.266 hybrid contribution 0.131 0.266 1.247 1.281 sum 7.970 -0.116 -14.132 16.225 Atomic orbital electron populations 1.22251 0.97034 1.01090 1.01302 1.20668 0.93432 0.95681 0.85096 0.92179 1.21522 0.80186 1.00209 0.98150 1.45991 1.07940 1.58801 1.23556 1.20936 0.90674 0.76894 0.81618 1.90677 1.71357 1.49473 1.34897 1.20742 0.90510 1.04745 0.97967 1.19291 0.96904 0.94104 0.94177 1.21418 0.99342 0.93741 1.00011 1.21316 0.96486 1.01529 0.91335 1.21421 1.03365 0.91644 1.01259 1.17888 1.02347 0.90666 0.83446 1.91465 1.90857 1.78882 1.51634 1.21110 1.02215 1.01416 0.92399 1.42597 1.78311 1.10343 1.05985 1.19561 1.34715 0.94168 0.88146 0.90496 1.25420 1.03094 0.96694 1.00950 1.69810 1.52527 1.10061 1.29222 0.85258 0.76489 0.78266 0.80402 1.22282 1.22576 1.19336 0.93670 0.90940 0.93991 0.90451 0.93342 0.75120 0.85331 0.85796 0.84385 0.82148 0.82809 0.84407 0.79444 0.94211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.08 9.49 71.98 0.68 -4.39 16 2 C 0.16 5.61 3.05 44.99 0.14 5.75 16 3 H 0.06 2.06 8.08 -2.39 -0.02 2.04 16 4 C 0.12 3.99 5.23 86.38 0.45 4.44 16 5 N -0.71 -21.74 5.39 -463.07 -2.49 -24.23 16 6 C 0.51 15.40 7.82 87.66 0.69 16.09 16 7 O -0.58 -21.77 16.03 -3.04 -0.05 -21.82 16 8 C -0.10 -2.21 5.83 29.10 0.17 -2.05 16 9 C -0.04 -1.04 4.37 -19.87 -0.09 -1.13 16 10 C -0.13 -2.76 9.70 22.27 0.22 -2.55 16 11 C -0.09 -1.64 10.04 22.26 0.22 -1.42 16 12 C -0.16 -3.12 10.03 22.31 0.22 -2.89 16 13 C 0.08 1.79 7.30 22.37 0.16 1.96 16 14 F -0.15 -3.70 17.27 44.97 0.78 -2.93 16 15 C -0.15 -3.65 9.68 22.31 0.22 -3.44 16 16 N -0.73 -32.96 4.56 -322.94 -1.47 -34.44 16 17 C -0.23 -11.81 9.93 84.03 0.83 -10.97 16 18 H 0.08 3.73 7.83 -2.91 -0.02 3.71 16 19 C -0.07 -3.68 5.50 84.86 0.47 -3.21 16 20 N -0.97 -55.47 13.06 21.65 0.28 -55.19 16 21 Si 0.97 43.57 29.55 68.60 2.03 45.60 16 22 H -0.30 -13.44 7.11 99.48 0.71 -12.73 16 23 H -0.30 -13.73 7.11 99.48 0.71 -13.03 16 24 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 25 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.41 12.51 8.14 -92.71 -0.75 11.75 16 31 H 0.13 2.19 8.09 -2.38 -0.02 2.17 16 32 H 0.12 2.41 8.08 -2.39 -0.02 2.39 16 33 H 0.14 2.68 8.06 -2.91 -0.02 2.66 16 34 H 0.16 1.96 8.06 -2.91 -0.02 1.93 16 35 H 0.15 2.24 8.06 -2.91 -0.02 2.22 16 36 H 0.14 2.98 8.06 -2.91 -0.02 2.95 16 37 H 0.37 18.55 7.80 -92.71 -0.72 17.83 16 38 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 Total: -1.00 -64.61 334.43 3.06 -61.55 By element: Atomic # 1 Polarization: 35.67 SS G_CDS: -0.40 Total: 35.28 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: 4.38 Total: -3.82 kcal Atomic # 7 Polarization: -110.17 SS G_CDS: -3.69 Total: -113.86 kcal Atomic # 8 Polarization: -21.77 SS G_CDS: -0.05 Total: -21.82 kcal Atomic # 9 Polarization: -3.70 SS G_CDS: 0.78 Total: -2.93 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -64.61 3.06 -61.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752918962.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.269 kcal (2) G-P(sol) polarization free energy of solvation -64.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds