Wall clock time and date at job start Tue Mar 31 2020 02:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46939 * 2 1 4 4 C 1.52996 * 109.47238 * 239.99819 * 2 1 3 5 5 N 1.46498 * 109.47059 * 64.99625 * 4 2 1 6 6 C 1.36943 * 119.99752 * 179.72430 * 5 4 2 7 7 H 1.08002 * 119.99793 * 0.27665 * 6 5 4 8 8 C 1.38811 * 120.00012 * 180.27737 * 6 5 4 9 9 N 1.31611 * 120.00081 * 180.02562 * 8 6 5 10 10 Si 1.86800 * 119.99814 * 0.02562 * 8 6 5 11 11 H 1.48501 * 109.47483 * 90.00178 * 10 8 6 12 12 H 1.48498 * 109.47011 * 210.00042 * 10 8 6 13 13 H 1.48502 * 109.47495 * 329.99664 * 10 8 6 14 14 C 1.53003 * 109.47108 * 119.99256 * 2 1 3 15 15 N 1.46490 * 109.47559 * 295.00069 * 14 2 1 16 16 C 1.34773 * 120.00384 * 179.97438 * 15 14 2 17 17 O 1.21556 * 119.99885 * 0.02562 * 16 15 14 18 18 C 1.47855 * 120.00556 * 180.02562 * 16 15 14 19 19 C 1.39594 * 120.12964 * 359.72493 * 18 16 15 20 20 C 1.37945 * 119.90252 * 179.76800 * 19 18 16 21 21 C 1.38334 * 120.17562 * 0.50976 * 20 19 18 22 22 C 1.38550 * 120.26667 * 359.74789 * 21 20 19 23 23 F 1.35108 * 119.95351 * 180.02562 * 22 21 20 24 24 C 1.38204 * 120.09297 * 359.97438 * 22 21 20 25 25 H 1.08995 * 109.46988 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46786 * 300.00471 * 1 2 3 27 27 H 1.09001 * 109.47309 * 60.00201 * 1 2 3 28 28 H 1.09004 * 109.47066 * 304.99893 * 4 2 1 29 29 H 1.08994 * 109.46974 * 185.00040 * 4 2 1 30 30 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 31 31 H 0.97008 * 120.00329 * 179.97438 * 9 8 6 32 32 H 1.08998 * 109.46886 * 55.00501 * 14 2 1 33 33 H 1.09002 * 109.46923 * 174.99751 * 14 2 1 34 34 H 0.97002 * 120.00315 * 0.02562 * 15 14 2 35 35 H 1.07999 * 120.04487 * 0.02576 * 19 18 16 36 36 H 1.08003 * 119.90985 * 180.23385 * 20 19 18 37 37 H 1.08001 * 119.86632 * 179.76754 * 21 20 19 38 38 H 1.08006 * 120.09210 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6524 0.0353 -2.4423 6 6 2.0064 -0.4178 -3.6852 7 1 2.5675 -1.3351 -3.7860 8 6 1.6441 0.3020 -4.8155 9 7 1.9838 -0.1336 -6.0100 10 14 0.6743 1.8890 -4.6410 11 1 1.6138 3.0324 -4.5180 12 1 -0.1830 2.0794 -5.8385 13 1 -0.1791 1.8169 -3.4278 14 6 2.0400 -0.7211 1.2494 15 7 1.6525 0.0355 2.4424 16 6 1.9956 -0.4133 3.6660 17 8 2.6271 -1.4457 3.7796 18 6 1.6040 0.3501 4.8702 19 6 0.8838 1.5391 4.7426 20 6 0.5168 2.2450 5.8695 21 6 0.8696 1.7833 7.1249 22 6 1.5890 0.6069 7.2595 23 9 1.9297 0.1615 8.4887 24 6 1.9575 -0.1122 6.1383 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.6054 -1.7199 -1.2950 29 1 3.1263 -0.7995 -1.2055 30 1 1.1488 0.8593 -2.3518 31 1 1.7304 0.3692 -6.7999 32 1 1.6054 -1.7197 1.2953 33 1 3.1263 -0.7993 1.2057 34 1 1.1483 0.8592 2.3518 35 1 0.6108 1.9035 3.7633 36 1 -0.0437 3.1630 5.7711 37 1 0.5828 2.3419 8.0035 38 1 2.5180 -1.0295 6.2433 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753614033.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:29:59 Heat of formation + Delta-G solvation = -72.817363 kcal Electronic energy + Delta-G solvation = -20640.162301 eV Core-core repulsion = 17203.188667 eV Total energy + Delta-G solvation = -3436.973634 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.97612 -41.32022 -39.32943 -38.27787 -36.12033 -34.28721 -32.74595 -32.12588 -31.39889 -27.91338 -27.36320 -25.05769 -23.83317 -23.54463 -21.78354 -21.43341 -19.86101 -19.15442 -17.73803 -17.25186 -17.18043 -16.84881 -16.74982 -16.51866 -16.39147 -15.77328 -15.52875 -15.08000 -14.85086 -14.76537 -14.23733 -14.20096 -13.89632 -13.64802 -13.27205 -13.16531 -12.97217 -12.85846 -12.41350 -12.17399 -12.11940 -12.00637 -11.75037 -11.68495 -11.15567 -10.97455 -10.34650 -10.07794 -9.83643 -9.29443 -8.01771 -5.36193 -0.36410 0.10365 1.38454 1.44265 1.51567 1.69573 1.97138 2.50235 2.66239 3.18063 3.29452 3.51717 3.55810 3.73636 3.93820 3.98097 3.99382 4.05141 4.13281 4.26242 4.52153 4.63007 4.68393 4.78661 4.92730 4.95541 5.01813 5.03254 5.10611 5.14489 5.21848 5.25837 5.33897 5.46690 5.75503 5.76348 6.21618 6.43461 7.08772 7.09159 7.83518 8.04793 9.19903 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.038250 B = 0.002809 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.855080 B = 9965.475895 C =10545.913900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.098 4.098 3 H 0.092 0.908 4 C 0.158 3.842 5 N -0.753 5.753 6 C -0.238 4.238 7 H 0.052 0.948 8 C -0.068 4.068 9 N -0.986 5.986 10 Si 0.960 3.040 11 H -0.276 1.276 12 H -0.298 1.298 13 H -0.243 1.243 14 C 0.135 3.865 15 N -0.702 5.702 16 C 0.554 3.446 17 O -0.581 6.581 18 C -0.120 4.120 19 C -0.087 4.087 20 C -0.086 4.086 21 C -0.121 4.121 22 C 0.074 3.926 23 F -0.147 7.147 24 C -0.116 4.116 25 H 0.052 0.948 26 H 0.082 0.918 27 H 0.048 0.952 28 H 0.024 0.976 29 H 0.024 0.976 30 H 0.369 0.631 31 H 0.258 0.742 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.416 0.584 35 H 0.163 0.837 36 H 0.180 0.820 37 H 0.166 0.834 38 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.870 9.546 29.234 31.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.117 4.117 3 H 0.110 0.890 4 C 0.031 3.969 5 N -0.400 5.400 6 C -0.369 4.369 7 H 0.070 0.930 8 C -0.260 4.260 9 N -0.637 5.637 10 Si 0.787 3.213 11 H -0.202 1.202 12 H -0.225 1.225 13 H -0.167 1.167 14 C 0.010 3.990 15 N -0.355 5.355 16 C 0.342 3.658 17 O -0.462 6.462 18 C -0.123 4.123 19 C -0.106 4.106 20 C -0.103 4.103 21 C -0.140 4.140 22 C 0.055 3.945 23 F -0.125 7.125 24 C -0.135 4.135 25 H 0.071 0.929 26 H 0.101 0.899 27 H 0.068 0.932 28 H 0.042 0.958 29 H 0.042 0.958 30 H 0.203 0.797 31 H 0.067 0.933 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.255 0.745 35 H 0.181 0.819 36 H 0.197 0.803 37 H 0.183 0.817 38 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -6.319 8.640 29.191 31.091 hybrid contribution -0.146 0.383 -0.480 0.631 sum -6.465 9.023 28.711 30.782 Atomic orbital electron populations 1.21828 0.93500 1.02405 1.02309 1.21405 0.97477 1.00588 0.92223 0.88983 1.20705 0.96974 0.94227 0.84950 1.42608 1.67523 1.27984 1.01840 1.19030 1.28075 1.05694 0.84123 0.93041 1.25612 1.02695 1.03140 0.94510 1.69905 1.53406 1.42334 0.98042 0.85335 0.78791 0.79408 0.77788 1.20244 1.22470 1.16716 1.21202 0.99893 0.95182 0.82689 1.45731 1.56980 1.28105 1.04665 1.18532 0.78831 0.84403 0.84050 1.90782 1.41951 1.26192 1.87278 1.19655 1.03150 0.97699 0.91779 1.21771 0.94988 0.92143 1.01678 1.21453 0.98155 1.00838 0.89903 1.21764 0.96916 0.94053 1.01218 1.17760 1.01355 0.96153 0.79269 1.91504 1.90828 1.89391 1.40802 1.21202 1.00345 1.00741 0.91260 0.92912 0.89928 0.93246 0.95823 0.95844 0.79673 0.93323 0.91624 0.91855 0.74470 0.81934 0.80257 0.81660 0.85323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 8.94 71.98 0.64 -2.51 16 2 C -0.10 -2.40 2.46 -10.79 -0.03 -2.43 16 3 H 0.09 2.05 8.14 -2.38 -0.02 2.03 16 4 C 0.16 5.70 5.65 86.38 0.49 6.18 16 5 N -0.75 -33.80 5.13 -343.46 -1.76 -35.57 16 6 C -0.24 -13.55 10.47 84.03 0.88 -12.67 16 7 H 0.05 3.25 8.06 -2.91 -0.02 3.23 16 8 C -0.07 -4.00 5.50 84.86 0.47 -3.54 16 9 N -0.99 -63.32 13.97 21.65 0.30 -63.01 16 10 Si 0.96 43.92 27.74 68.60 1.90 45.82 16 11 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 12 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 13 H -0.24 -9.62 6.52 99.48 0.65 -8.97 16 14 C 0.13 3.13 5.06 86.38 0.44 3.56 16 15 N -0.70 -12.89 5.23 -465.98 -2.44 -15.33 16 16 C 0.55 12.87 7.77 86.79 0.67 13.54 16 17 O -0.58 -18.91 16.35 -3.89 -0.06 -18.97 16 18 C -0.12 -2.11 5.87 -20.09 -0.12 -2.23 16 19 C -0.09 -0.82 9.54 22.53 0.21 -0.61 16 20 C -0.09 -0.53 10.03 22.22 0.22 -0.31 16 21 C -0.12 -1.14 10.02 22.37 0.22 -0.92 16 22 C 0.07 1.20 7.29 22.34 0.16 1.37 16 23 F -0.15 -2.76 17.26 44.97 0.78 -1.99 16 24 C -0.12 -2.27 9.57 22.57 0.22 -2.06 16 25 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.08 1.19 7.18 -2.39 -0.02 1.18 16 27 H 0.05 1.27 7.18 -2.39 -0.02 1.25 16 28 H 0.02 0.89 8.14 -2.38 -0.02 0.88 16 29 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.37 15.27 4.71 -92.71 -0.44 14.83 16 31 H 0.26 15.71 8.31 -92.70 -0.77 14.94 16 32 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.42 4.66 5.69 -92.71 -0.53 4.13 16 35 H 0.16 0.54 6.40 -2.91 -0.02 0.53 16 36 H 0.18 -0.20 8.06 -2.91 -0.02 -0.22 16 37 H 0.17 0.70 8.06 -2.91 -0.02 0.68 16 38 H 0.13 2.93 7.65 -2.91 -0.02 2.91 16 Total: -1.00 -76.95 324.75 3.27 -73.69 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: 0.07 Total: 17.98 kcal Atomic # 6 Polarization: -7.10 SS G_CDS: 4.49 Total: -2.61 kcal Atomic # 7 Polarization: -110.01 SS G_CDS: -3.90 Total: -113.91 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: -0.06 Total: -18.97 kcal Atomic # 9 Polarization: -2.76 SS G_CDS: 0.78 Total: -1.99 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 1.90 Total: 45.82 kcal Total: -76.95 3.27 -73.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753614033.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.868 kcal (2) G-P(sol) polarization free energy of solvation -76.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds