Wall clock time and date at job start Tue Mar 31 2020 02:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86794 * 119.99766 * 2 1 4 4 H 1.48497 * 109.47118 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47522 * 299.99721 * 3 2 1 6 6 H 1.48506 * 109.47250 * 59.99933 * 3 2 1 7 7 C 1.38946 * 119.99896 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99614 * 180.02562 * 7 2 1 9 9 N 1.37093 * 120.00354 * 0.02562 * 7 2 1 10 10 C 1.34773 * 120.00195 * 180.02562 * 9 7 2 11 11 O 1.21293 * 120.00238 * 359.97438 * 10 9 7 12 12 C 1.50703 * 120.00020 * 179.97438 * 10 9 7 13 13 H 1.09002 * 110.85716 * 59.29468 * 12 10 9 14 14 C 1.54625 * 110.97084 * 295.50392 * 12 10 9 15 15 C 1.51287 * 104.19667 * 266.64538 * 14 12 10 16 16 O 1.21283 * 124.93863 * 163.78239 * 15 14 12 17 17 N 1.34414 * 110.11346 * 343.74448 * 15 14 12 18 18 C 1.46504 * 124.34881 * 179.58811 * 17 15 14 19 19 C 1.53004 * 109.46652 * 59.97543 * 18 17 15 20 20 C 1.53004 * 109.46527 * 179.97438 * 19 18 17 21 21 C 1.53004 * 109.47234 * 60.00423 * 20 19 18 22 22 C 1.53002 * 109.46758 * 299.99764 * 21 20 19 23 23 C 1.52995 * 109.47140 * 299.97773 * 18 17 15 24 24 C 1.46825 * 111.31785 * 359.62446 * 17 15 14 25 25 H 0.97001 * 119.99814 * 0.02562 * 1 2 3 26 26 H 0.97001 * 119.99788 * 359.97438 * 9 7 2 27 27 H 1.09010 * 110.48568 * 25.32130 * 14 12 10 28 28 H 1.09003 * 110.49084 * 147.82878 * 14 12 10 29 29 H 1.09001 * 109.47082 * 179.97438 * 18 17 15 30 30 H 1.09001 * 109.47350 * 299.99802 * 19 18 17 31 31 H 1.08994 * 109.46992 * 60.00423 * 19 18 17 32 32 H 1.08989 * 109.47559 * 300.00292 * 20 19 18 33 33 H 1.09000 * 109.46876 * 179.97438 * 20 19 18 34 34 H 1.08991 * 109.47298 * 179.97438 * 21 20 19 35 35 H 1.08999 * 109.46883 * 59.99357 * 21 20 19 36 36 H 1.09001 * 109.47082 * 300.00006 * 22 21 20 37 37 H 1.09002 * 109.46532 * 179.97438 * 22 21 20 38 38 H 1.09000 * 109.46915 * 299.99735 * 23 18 17 39 39 H 1.09001 * 109.47349 * 59.99900 * 23 18 17 40 40 H 1.08998 * 110.23857 * 257.98198 * 24 17 15 41 41 H 1.09000 * 110.28306 * 135.96457 * 24 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8893 2.3965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3235 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0016 11 8 3.2103 -3.5578 0.0021 12 6 1.2438 -4.8629 0.0022 13 1 0.5997 -4.9395 -0.8738 14 6 0.4283 -5.0305 1.3051 15 6 1.3482 -5.8070 2.2214 16 8 1.2093 -5.9080 3.4220 17 7 2.3411 -6.3693 1.5111 18 6 3.4127 -7.1839 2.0896 19 6 2.8061 -8.4019 2.7893 20 6 3.9252 -9.2529 3.3930 21 6 4.7088 -8.4190 4.4087 22 6 5.3152 -7.2009 3.7090 23 6 4.1956 -6.3496 3.1054 24 6 2.2148 -6.0618 0.0810 25 1 -0.4850 0.8401 -0.0004 26 1 0.3535 -2.3906 0.0005 27 1 0.1934 -4.0571 1.7360 28 1 -0.4859 -5.5923 1.1134 29 1 4.0840 -7.5165 1.2980 30 1 2.1347 -8.0693 3.5810 31 1 2.2483 -8.9962 2.0656 32 1 4.5963 -9.5854 2.6011 33 1 3.4932 -10.1204 3.8918 34 1 5.5057 -9.0253 4.8390 35 1 4.0377 -8.0864 5.2006 36 1 5.9862 -7.5335 2.9171 37 1 5.8730 -6.6066 4.4328 38 1 4.6277 -5.4819 2.6070 39 1 3.5243 -6.0170 3.8971 40 1 1.8021 -6.9173 -0.4536 41 1 3.1852 -5.7892 -0.3340 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006613439.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:27:59 Heat of formation + Delta-G solvation = -94.148783 kcal Electronic energy + Delta-G solvation = -22747.884714 eV Core-core repulsion = 19433.446385 eV Total energy + Delta-G solvation = -3314.438329 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.59436 -38.41403 -37.52398 -35.68055 -33.98618 -32.58743 -31.19615 -30.73224 -28.72622 -27.30630 -25.23766 -22.87317 -22.57207 -22.33504 -20.14913 -19.06173 -18.70294 -17.96588 -16.68528 -16.57288 -15.25364 -15.09313 -14.75881 -14.41797 -14.21019 -14.06042 -13.85537 -13.71683 -13.60205 -13.01435 -12.85412 -12.53579 -12.25275 -12.15589 -11.78509 -11.61348 -11.44313 -11.31639 -11.12843 -11.05621 -10.97603 -10.65549 -10.38011 -10.31396 -10.25837 -10.19108 -9.58954 -9.27183 -8.48648 -8.36916 -8.04121 -6.47875 -3.88934 2.92453 3.12601 3.24485 3.25333 3.31428 3.75544 4.11513 4.56693 4.66085 4.76376 4.78396 4.86254 4.91773 5.13742 5.25261 5.27054 5.31811 5.39313 5.49819 5.52704 5.59413 5.65043 5.69928 5.75427 5.85808 5.98609 6.02431 6.08414 6.10632 6.19843 6.23194 6.25615 6.33359 6.41227 6.49062 6.92402 7.44843 7.50062 7.98312 8.51371 8.52749 9.10551 9.45773 9.95571 10.69441 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.026856 B = 0.004281 C = 0.004047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.354976 B = 6538.421711 C = 6916.205883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.025 3.975 3 Si 0.930 3.070 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.302 4.302 8 H 0.104 0.896 9 N -0.555 5.555 10 C 0.444 3.556 11 O -0.589 6.589 12 C -0.115 4.115 13 H 0.109 0.891 14 C -0.149 4.149 15 C 0.524 3.476 16 O -0.538 6.538 17 N -0.609 5.609 18 C 0.166 3.834 19 C -0.134 4.134 20 C -0.113 4.113 21 C -0.121 4.121 22 C -0.113 4.113 23 C -0.136 4.136 24 C 0.119 3.881 25 H 0.272 0.728 26 H 0.393 0.607 27 H 0.107 0.893 28 H 0.105 0.895 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.070 0.930 39 H 0.077 0.923 40 H 0.068 0.932 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.036 -15.734 2.104 16.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.177 4.177 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.431 4.431 8 H 0.122 0.878 9 N -0.189 5.189 10 C 0.229 3.771 11 O -0.474 6.474 12 C -0.137 4.137 13 H 0.127 0.873 14 C -0.189 4.189 15 C 0.312 3.688 16 O -0.416 6.416 17 N -0.342 5.342 18 C 0.063 3.937 19 C -0.172 4.172 20 C -0.151 4.151 21 C -0.159 4.159 22 C -0.151 4.151 23 C -0.175 4.175 24 C -0.004 4.004 25 H 0.082 0.918 26 H 0.227 0.773 27 H 0.125 0.875 28 H 0.123 0.877 29 H 0.102 0.898 30 H 0.097 0.903 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.096 0.904 40 H 0.087 0.913 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 3.697 -15.643 2.745 16.307 hybrid contribution -0.300 0.979 -0.179 1.039 sum 3.398 -14.664 2.567 15.270 Atomic orbital electron populations 1.69616 1.05953 1.28253 1.50002 1.25278 0.95640 0.99805 0.97019 0.85799 0.79722 0.81049 0.77785 1.19201 1.20662 1.20663 1.19763 0.93420 0.82152 1.47796 0.87815 1.41836 1.09280 1.04555 1.63262 1.19475 0.88062 0.84551 0.84963 1.90517 1.13692 1.86873 1.56361 1.22187 0.97469 0.95187 0.98902 0.87303 1.22404 0.98446 1.02928 0.95153 1.20775 0.81737 0.78550 0.87690 1.90647 1.74813 1.62351 1.13769 1.48307 1.26380 1.51108 1.08382 1.20876 0.87472 0.89902 0.95409 1.21944 0.98578 0.95832 1.00847 1.21468 0.97245 0.97813 0.98557 1.21567 0.99382 0.96664 0.98274 1.21486 0.97477 0.96428 0.99749 1.21942 0.97599 0.98522 0.99393 1.21989 1.01775 0.95434 0.81168 0.91772 0.77294 0.87489 0.87685 0.89812 0.90267 0.92113 0.92070 0.91958 0.92210 0.91806 0.92071 0.91828 0.91154 0.90436 0.91347 0.88590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.95 13.05 55.50 0.72 -23.23 16 2 C 0.02 0.65 5.50 -17.47 -0.10 0.56 16 3 Si 0.93 20.80 29.55 -169.99 -5.02 15.78 16 4 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 5 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 6 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.30 -8.24 9.68 -14.94 -0.14 -8.39 16 8 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 9 N -0.55 -13.57 5.10 -10.96 -0.06 -13.63 16 10 C 0.44 9.96 7.07 -10.99 -0.08 9.89 16 11 O -0.59 -15.23 15.09 5.55 0.08 -15.15 16 12 C -0.12 -1.87 3.54 -90.14 -0.32 -2.18 16 13 H 0.11 1.44 8.14 -51.93 -0.42 1.02 16 14 C -0.15 -2.35 6.40 -26.74 -0.17 -2.52 16 15 C 0.52 9.35 7.41 -10.86 -0.08 9.27 16 16 O -0.54 -11.00 15.12 5.55 0.08 -10.91 16 17 N -0.61 -9.58 2.83 -164.79 -0.47 -10.05 16 18 C 0.17 2.30 2.74 -67.93 -0.19 2.11 16 19 C -0.13 -1.64 5.21 -26.73 -0.14 -1.78 16 20 C -0.11 -1.12 5.92 -26.73 -0.16 -1.28 16 21 C -0.12 -1.26 5.92 -26.73 -0.16 -1.42 16 22 C -0.11 -1.31 5.92 -26.71 -0.16 -1.47 16 23 C -0.14 -2.03 5.21 -26.71 -0.14 -2.17 16 24 C 0.12 1.74 6.66 -3.09 -0.02 1.72 16 25 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 26 H 0.39 9.19 7.90 -40.82 -0.32 8.87 16 27 H 0.11 1.90 7.75 -51.92 -0.40 1.49 16 28 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 29 H 0.08 1.04 8.07 -51.93 -0.42 0.62 16 30 H 0.08 1.17 6.77 -51.93 -0.35 0.82 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.08 1.35 6.80 -51.93 -0.35 1.00 16 40 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.10 1.56 6.98 -51.93 -0.36 1.19 16 LS Contribution 328.55 15.07 4.95 4.95 Total: -1.00 -31.59 328.55 -7.92 -39.51 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: -6.37 Total: 10.40 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: -1.85 Total: 2.32 kcal Atomic # 7 Polarization: -47.11 SS G_CDS: 0.20 Total: -46.91 kcal Atomic # 8 Polarization: -26.23 SS G_CDS: 0.17 Total: -26.06 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.59 -7.92 -39.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006613439.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.638 kcal (2) G-P(sol) polarization free energy of solvation -31.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds