Wall clock time and date at job start Tue Mar 31 2020 02:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86794 * 119.99766 * 2 1 4 4 H 1.48497 * 109.47118 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47522 * 299.99721 * 3 2 1 6 6 H 1.48506 * 109.47250 * 59.99933 * 3 2 1 7 7 C 1.38946 * 119.99896 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99614 * 180.02562 * 7 2 1 9 9 N 1.37093 * 120.00354 * 0.02562 * 7 2 1 10 10 C 1.34773 * 120.00195 * 180.02562 * 9 7 2 11 11 O 1.21293 * 120.00238 * 359.97438 * 10 9 7 12 12 C 1.50703 * 120.00020 * 179.97438 * 10 9 7 13 13 H 1.09002 * 110.85716 * 59.29468 * 12 10 9 14 14 C 1.54625 * 110.97084 * 295.50392 * 12 10 9 15 15 C 1.51287 * 104.19667 * 266.64538 * 14 12 10 16 16 O 1.21283 * 124.93863 * 163.78239 * 15 14 12 17 17 N 1.34414 * 110.11346 * 343.74448 * 15 14 12 18 18 C 1.46504 * 124.34881 * 179.58811 * 17 15 14 19 19 C 1.53004 * 109.46652 * 59.97543 * 18 17 15 20 20 C 1.53004 * 109.46527 * 179.97438 * 19 18 17 21 21 C 1.53004 * 109.47234 * 60.00423 * 20 19 18 22 22 C 1.53002 * 109.46758 * 299.99764 * 21 20 19 23 23 C 1.52995 * 109.47140 * 299.97773 * 18 17 15 24 24 C 1.46825 * 111.31785 * 359.62446 * 17 15 14 25 25 H 0.97001 * 119.99814 * 0.02562 * 1 2 3 26 26 H 0.97001 * 119.99788 * 359.97438 * 9 7 2 27 27 H 1.09010 * 110.48568 * 25.32130 * 14 12 10 28 28 H 1.09003 * 110.49084 * 147.82878 * 14 12 10 29 29 H 1.09001 * 109.47082 * 179.97438 * 18 17 15 30 30 H 1.09001 * 109.47350 * 299.99802 * 19 18 17 31 31 H 1.08994 * 109.46992 * 60.00423 * 19 18 17 32 32 H 1.08989 * 109.47559 * 300.00292 * 20 19 18 33 33 H 1.09000 * 109.46876 * 179.97438 * 20 19 18 34 34 H 1.08991 * 109.47298 * 179.97438 * 21 20 19 35 35 H 1.08999 * 109.46883 * 59.99357 * 21 20 19 36 36 H 1.09001 * 109.47082 * 300.00006 * 22 21 20 37 37 H 1.09002 * 109.46532 * 179.97438 * 22 21 20 38 38 H 1.09000 * 109.46915 * 299.99735 * 23 18 17 39 39 H 1.09001 * 109.47349 * 59.99900 * 23 18 17 40 40 H 1.08998 * 110.23857 * 257.98198 * 24 17 15 41 41 H 1.09000 * 110.28306 * 135.96457 * 24 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8893 2.3965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3235 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0016 11 8 3.2103 -3.5578 0.0021 12 6 1.2438 -4.8629 0.0022 13 1 0.5997 -4.9395 -0.8738 14 6 0.4283 -5.0305 1.3051 15 6 1.3482 -5.8070 2.2214 16 8 1.2093 -5.9080 3.4220 17 7 2.3411 -6.3693 1.5111 18 6 3.4127 -7.1839 2.0896 19 6 2.8061 -8.4019 2.7893 20 6 3.9252 -9.2529 3.3930 21 6 4.7088 -8.4190 4.4087 22 6 5.3152 -7.2009 3.7090 23 6 4.1956 -6.3496 3.1054 24 6 2.2148 -6.0618 0.0810 25 1 -0.4850 0.8401 -0.0004 26 1 0.3535 -2.3906 0.0005 27 1 0.1934 -4.0571 1.7360 28 1 -0.4859 -5.5923 1.1134 29 1 4.0840 -7.5165 1.2980 30 1 2.1347 -8.0693 3.5810 31 1 2.2483 -8.9962 2.0656 32 1 4.5963 -9.5854 2.6011 33 1 3.4932 -10.1204 3.8918 34 1 5.5057 -9.0253 4.8390 35 1 4.0377 -8.0864 5.2006 36 1 5.9862 -7.5335 2.9171 37 1 5.8730 -6.6066 4.4328 38 1 4.6277 -5.4819 2.6070 39 1 3.5243 -6.0170 3.8971 40 1 1.8021 -6.9173 -0.4536 41 1 3.1852 -5.7892 -0.3340 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000006613439.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:27:58 Heat of formation + Delta-G solvation = -114.778392 kcal Electronic energy + Delta-G solvation = -22748.779281 eV Core-core repulsion = 19433.446385 eV Total energy + Delta-G solvation = -3315.332896 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.92682 -40.00414 -38.76424 -37.13126 -35.95224 -33.89651 -33.05984 -31.71771 -29.91001 -28.61992 -27.12938 -24.15653 -23.68411 -23.53958 -21.25014 -20.68856 -19.96599 -19.89030 -18.20456 -17.86573 -16.88702 -16.42535 -16.22410 -15.93405 -15.66456 -15.41391 -15.18526 -14.88759 -14.84685 -14.61256 -14.16663 -13.76640 -13.60051 -13.25403 -13.16944 -13.11241 -12.90745 -12.78301 -12.52394 -12.42583 -12.24694 -12.12713 -12.04790 -11.58058 -11.53507 -11.27160 -11.20535 -10.62762 -10.35164 -10.03678 -9.60665 -8.49467 -5.97951 1.33980 1.40275 1.53516 1.56051 1.98367 2.07758 2.27484 3.08730 3.14561 3.36083 3.51478 3.76905 3.79342 3.92859 4.01176 4.19771 4.27191 4.27942 4.35376 4.51993 4.54516 4.55807 4.62299 4.63397 4.73056 4.86540 4.93263 4.96926 5.03214 5.09091 5.18780 5.22799 5.27257 5.36442 5.39400 5.47832 5.73676 5.96765 6.18088 6.55368 7.09415 7.18385 7.52826 8.07186 8.67774 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.026856 B = 0.004281 C = 0.004047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.354976 B = 6538.421711 C = 6916.205883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.010 4.010 3 Si 0.989 3.011 4 H -0.275 1.275 5 H -0.267 1.267 6 H -0.274 1.274 7 C -0.335 4.335 8 H 0.077 0.923 9 N -0.566 5.566 10 C 0.442 3.558 11 O -0.628 6.628 12 C -0.105 4.105 13 H 0.153 0.847 14 C -0.141 4.141 15 C 0.509 3.491 16 O -0.575 6.575 17 N -0.608 5.608 18 C 0.158 3.842 19 C -0.125 4.125 20 C -0.108 4.108 21 C -0.119 4.119 22 C -0.109 4.109 23 C -0.133 4.133 24 C 0.121 3.879 25 H 0.278 0.722 26 H 0.398 0.602 27 H 0.082 0.918 28 H 0.149 0.851 29 H 0.106 0.894 30 H 0.048 0.952 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.045 0.955 36 H 0.079 0.921 37 H 0.062 0.938 38 H 0.037 0.963 39 H 0.042 0.958 40 H 0.121 0.879 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.897 -17.716 1.010 17.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.210 4.210 3 Si 0.813 3.187 4 H -0.199 1.199 5 H -0.192 1.192 6 H -0.199 1.199 7 C -0.464 4.464 8 H 0.095 0.905 9 N -0.202 5.202 10 C 0.229 3.771 11 O -0.516 6.516 12 C -0.127 4.127 13 H 0.170 0.830 14 C -0.182 4.182 15 C 0.298 3.702 16 O -0.456 6.456 17 N -0.340 5.340 18 C 0.056 3.944 19 C -0.163 4.163 20 C -0.146 4.146 21 C -0.157 4.157 22 C -0.147 4.147 23 C -0.172 4.172 24 C -0.001 4.001 25 H 0.088 0.912 26 H 0.232 0.768 27 H 0.101 0.899 28 H 0.167 0.833 29 H 0.124 0.876 30 H 0.066 0.934 31 H 0.095 0.905 32 H 0.100 0.900 33 H 0.096 0.904 34 H 0.102 0.898 35 H 0.064 0.936 36 H 0.098 0.902 37 H 0.081 0.919 38 H 0.056 0.944 39 H 0.061 0.939 40 H 0.139 0.861 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.551 -17.642 1.627 18.070 hybrid contribution -0.211 1.581 0.170 1.604 sum 3.340 -16.062 1.797 16.503 Atomic orbital electron populations 1.69666 1.06728 1.29296 1.49981 1.25996 0.96518 1.02309 0.96168 0.84923 0.78039 0.77340 0.78371 1.19923 1.19213 1.19924 1.19680 0.92641 0.84099 1.50027 0.90463 1.41895 1.09410 1.04641 1.64224 1.20631 0.88000 0.86137 0.82305 1.90493 1.15862 1.87888 1.57328 1.22212 0.97823 0.91798 1.00853 0.82984 1.22412 0.99726 1.02045 0.93985 1.21201 0.82599 0.78819 0.87551 1.90625 1.75901 1.63771 1.15332 1.48502 1.26010 1.50556 1.08942 1.21132 0.87415 0.90059 0.95764 1.21862 0.98982 0.95372 1.00123 1.21481 0.96655 0.97547 0.98913 1.21563 0.99822 0.96345 0.97961 1.21480 0.96427 0.96497 1.00257 1.21873 0.98191 0.98431 0.98661 1.22176 1.00830 0.96456 0.80685 0.91225 0.76783 0.89902 0.83280 0.87591 0.93352 0.90547 0.90005 0.90420 0.89750 0.93598 0.90210 0.91934 0.94393 0.93887 0.86080 0.90317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.96 13.05 21.66 0.28 -48.68 16 2 C -0.01 -0.51 5.50 84.92 0.47 -0.04 16 3 Si 0.99 42.97 29.55 68.60 2.03 44.99 16 4 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 5 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 6 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 7 C -0.33 -18.87 9.68 84.04 0.81 -18.05 16 8 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 9 N -0.57 -28.29 5.10 -306.99 -1.57 -29.86 16 10 C 0.44 20.02 7.07 87.66 0.62 20.64 16 11 O -0.63 -33.46 15.09 -3.07 -0.05 -33.51 16 12 C -0.11 -3.20 3.54 -10.48 -0.04 -3.24 16 13 H 0.15 3.39 8.14 -2.39 -0.02 3.37 16 14 C -0.14 -4.28 6.40 30.59 0.20 -4.08 16 15 C 0.51 18.15 7.41 87.90 0.65 18.80 16 16 O -0.58 -24.36 15.12 -3.04 -0.05 -24.41 16 17 N -0.61 -18.55 2.83 -793.87 -2.25 -20.80 16 18 C 0.16 4.23 2.74 44.99 0.12 4.36 16 19 C -0.13 -2.87 5.21 30.60 0.16 -2.71 16 20 C -0.11 -1.85 5.92 30.60 0.18 -1.67 16 21 C -0.12 -2.29 5.92 30.60 0.18 -2.11 16 22 C -0.11 -2.44 5.92 30.61 0.18 -2.26 16 23 C -0.13 -4.12 5.21 30.61 0.16 -3.96 16 24 C 0.12 3.21 6.66 86.82 0.58 3.79 16 25 H 0.28 13.91 8.31 -92.71 -0.77 13.14 16 26 H 0.40 18.82 7.90 -92.71 -0.73 18.09 16 27 H 0.08 2.96 7.75 -2.38 -0.02 2.94 16 28 H 0.15 3.19 8.14 -2.39 -0.02 3.17 16 29 H 0.11 2.37 8.07 -2.39 -0.02 2.35 16 30 H 0.05 1.43 6.77 -2.39 -0.02 1.41 16 31 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.04 1.61 6.80 -2.39 -0.02 1.59 16 40 H 0.12 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.08 2.43 6.98 -2.39 -0.02 2.42 16 Total: -1.00 -72.92 328.55 2.98 -69.94 By element: Atomic # 1 Polarization: 32.55 SS G_CDS: 0.30 Total: 32.85 kcal Atomic # 6 Polarization: 5.20 SS G_CDS: 4.27 Total: 9.47 kcal Atomic # 7 Polarization: -95.81 SS G_CDS: -3.53 Total: -99.34 kcal Atomic # 8 Polarization: -57.82 SS G_CDS: -0.09 Total: -57.92 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 44.99 kcal Total: -72.92 2.98 -69.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006613439.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.838 kcal (2) G-P(sol) polarization free energy of solvation -72.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds