Wall clock time and date at job start Tue Mar 31 2020 02:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86796 * 120.00342 * 2 1 4 4 H 1.48501 * 109.47438 * 240.00428 * 3 2 1 5 5 H 1.48504 * 109.46883 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46866 * 120.00308 * 3 2 1 7 7 C 1.38958 * 119.99347 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99408 * 179.97438 * 7 2 1 9 9 N 1.37092 * 120.00096 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99729 * 179.72242 * 9 7 2 11 11 O 1.21293 * 120.00229 * 0.27992 * 10 9 7 12 12 C 1.50703 * 120.00290 * 180.27555 * 10 9 7 13 13 H 1.08999 * 110.85293 * 300.70552 * 12 10 9 14 14 C 1.54626 * 110.96750 * 64.49224 * 12 10 9 15 15 C 1.51379 * 104.14909 * 93.33627 * 14 12 10 16 16 O 1.21284 * 124.93403 * 196.29351 * 15 14 12 17 17 N 1.34416 * 110.12269 * 16.25690 * 15 14 12 18 18 C 1.46503 * 124.35010 * 180.42696 * 17 15 14 19 19 C 1.52996 * 109.47232 * 59.97247 * 18 17 15 20 20 C 1.53001 * 109.47318 * 180.02562 * 19 18 17 21 21 C 1.53006 * 109.46762 * 60.00082 * 20 19 18 22 22 C 1.52996 * 109.47137 * 300.00029 * 21 20 19 23 23 C 1.52994 * 109.47215 * 60.00068 * 22 21 20 24 24 C 1.46757 * 111.30259 * 0.40225 * 17 15 14 25 25 H 0.97004 * 119.99790 * 359.97438 * 1 2 3 26 26 H 0.97001 * 120.00484 * 0.02562 * 9 7 2 27 27 H 1.08999 * 110.48784 * 212.00514 * 14 12 10 28 28 H 1.09008 * 110.48893 * 334.64546 * 14 12 10 29 29 H 1.08996 * 109.47432 * 179.97438 * 18 17 15 30 30 H 1.09003 * 109.47276 * 300.00106 * 19 18 17 31 31 H 1.09002 * 109.47133 * 60.00370 * 19 18 17 32 32 H 1.08996 * 109.47346 * 300.00164 * 20 19 18 33 33 H 1.08998 * 109.47142 * 179.97438 * 20 19 18 34 34 H 1.09000 * 109.46909 * 180.02562 * 21 20 19 35 35 H 1.09003 * 109.47248 * 60.00304 * 21 20 19 36 36 H 1.09003 * 109.47276 * 300.00257 * 22 21 20 37 37 H 1.09002 * 109.47133 * 179.97438 * 22 21 20 38 38 H 1.09004 * 109.47357 * 179.97438 * 23 22 21 39 39 H 1.09003 * 109.46844 * 59.99924 * 23 22 21 40 40 H 1.09006 * 110.24959 * 223.98511 * 24 17 15 41 41 H 1.08999 * 110.25006 * 101.98369 * 24 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2832 2.7464 0.0006 6 1 3.1020 1.6962 1.2125 7 6 2.0088 -1.2035 -0.0005 8 1 3.0888 -1.2035 -0.0010 9 7 1.3232 -2.3907 -0.0005 10 6 1.9970 -3.5579 -0.0067 11 8 3.2100 -3.5580 -0.0071 12 6 1.2435 -4.8630 -0.0130 13 1 0.5994 -4.9434 0.8627 14 6 0.4278 -5.0247 -1.3166 15 6 1.3492 -5.7973 -2.2362 16 8 1.2118 -5.8921 -3.4375 17 7 2.3422 -6.3623 -1.5279 18 6 3.4145 -7.1735 -2.1095 19 6 4.1969 -6.3345 -3.1219 20 6 5.3164 -7.1819 -3.7298 21 6 4.7106 -8.3974 -4.4345 22 6 3.9283 -9.2364 -3.4221 23 6 2.8088 -8.3890 -2.8142 24 6 2.2144 -6.0616 -0.0972 25 1 -0.4850 0.8401 0.0004 26 1 0.3532 -2.3907 -0.0005 27 1 -0.4849 -5.5899 -1.1279 28 1 0.1924 -4.0494 -1.7429 29 1 4.0861 -7.5086 -1.3192 30 1 3.5253 -5.9994 -3.9124 31 1 4.6281 -5.4683 -2.6200 32 1 5.9881 -7.5174 -2.9397 33 1 5.8735 -6.5843 -4.4513 34 1 5.5082 -9.0014 -4.8672 35 1 4.0389 -8.0620 -5.2247 36 1 4.6000 -9.5719 -2.6319 37 1 3.4963 -10.1021 -3.9242 38 1 2.2511 -8.9869 -2.0933 39 1 2.1372 -8.0535 -3.6045 40 1 3.1846 -5.7911 0.3196 41 1 1.8012 -6.9196 0.4332 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000006613440.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:28:00 Heat of formation + Delta-G solvation = -114.652271 kcal Electronic energy + Delta-G solvation = -22750.401306 eV Core-core repulsion = 19435.073879 eV Total energy + Delta-G solvation = -3315.327427 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.92717 -40.00235 -38.76466 -37.13296 -35.94929 -33.89619 -33.05900 -31.72063 -29.91097 -28.61524 -27.12453 -24.15551 -23.68494 -23.53890 -21.24931 -20.68583 -19.96646 -19.88749 -18.20295 -17.86563 -16.88073 -16.42457 -16.22064 -15.94365 -15.66396 -15.41328 -15.18570 -14.88708 -14.84717 -14.60651 -14.16643 -13.76585 -13.58971 -13.25176 -13.16897 -13.11330 -12.90351 -12.78096 -12.52530 -12.44538 -12.25617 -12.12697 -12.04638 -11.57971 -11.52356 -11.27200 -11.20549 -10.62646 -10.34956 -10.03823 -9.60622 -8.49020 -5.97630 1.37108 1.40125 1.50417 1.55957 1.98719 2.07844 2.27650 3.08869 3.14881 3.35998 3.51567 3.76840 3.79277 3.92902 4.01220 4.19766 4.27184 4.27927 4.35345 4.52027 4.54626 4.55875 4.62240 4.63391 4.73058 4.86565 4.93273 4.96915 5.03207 5.09050 5.18736 5.22766 5.27239 5.36413 5.39047 5.47799 5.73723 5.96627 6.18149 6.55615 7.09344 7.18372 7.52950 8.07369 8.67766 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.026805 B = 0.004286 C = 0.004051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.348895 B = 6531.533744 C = 6909.901583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.009 4.009 3 Si 0.989 3.011 4 H -0.277 1.277 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.337 4.337 8 H 0.078 0.922 9 N -0.566 5.566 10 C 0.441 3.559 11 O -0.628 6.628 12 C -0.105 4.105 13 H 0.153 0.847 14 C -0.141 4.141 15 C 0.509 3.491 16 O -0.576 6.576 17 N -0.608 5.608 18 C 0.158 3.842 19 C -0.133 4.133 20 C -0.109 4.109 21 C -0.119 4.119 22 C -0.108 4.108 23 C -0.125 4.125 24 C 0.121 3.879 25 H 0.278 0.722 26 H 0.398 0.602 27 H 0.149 0.851 28 H 0.083 0.917 29 H 0.106 0.894 30 H 0.042 0.958 31 H 0.037 0.963 32 H 0.079 0.921 33 H 0.062 0.938 34 H 0.084 0.916 35 H 0.045 0.955 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.048 0.952 40 H 0.078 0.922 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.899 -17.690 -1.069 17.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.209 4.209 3 Si 0.813 3.187 4 H -0.202 1.202 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.466 4.466 8 H 0.096 0.904 9 N -0.201 5.201 10 C 0.229 3.771 11 O -0.516 6.516 12 C -0.127 4.127 13 H 0.170 0.830 14 C -0.181 4.181 15 C 0.298 3.702 16 O -0.456 6.456 17 N -0.340 5.340 18 C 0.056 3.944 19 C -0.172 4.172 20 C -0.147 4.147 21 C -0.157 4.157 22 C -0.146 4.146 23 C -0.163 4.163 24 C -0.002 4.002 25 H 0.088 0.912 26 H 0.232 0.768 27 H 0.167 0.833 28 H 0.101 0.899 29 H 0.124 0.876 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.098 0.902 33 H 0.081 0.919 34 H 0.103 0.897 35 H 0.064 0.936 36 H 0.100 0.900 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.066 0.934 40 H 0.097 0.903 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 3.545 -17.609 -1.683 18.041 hybrid contribution -0.196 1.574 -0.170 1.595 sum 3.349 -16.035 -1.853 16.485 Atomic orbital electron populations 1.69654 1.06734 1.29437 1.49814 1.25998 0.96517 1.02307 0.96125 0.85046 0.77865 0.76909 0.78885 1.20211 1.19374 1.19365 1.19616 0.92660 0.84117 1.50248 0.90435 1.41884 1.09402 1.04628 1.64205 1.20629 0.88006 0.86134 0.82342 1.90492 1.15853 1.87884 1.57353 1.22211 0.97823 0.91813 1.00842 0.82991 1.22430 0.99704 1.02068 0.93934 1.21235 0.82609 0.78775 0.87588 1.90625 1.75930 1.63766 1.15311 1.48483 1.25965 1.50668 1.08876 1.21130 0.87395 0.90103 0.95727 1.21865 0.98201 0.98430 0.98663 1.21471 0.96431 0.96540 1.00220 1.21565 0.99825 0.96341 0.97959 1.21480 0.96657 0.97546 0.98913 1.21863 0.98985 0.95408 1.00090 1.22163 1.00828 0.96509 0.80652 0.91203 0.76784 0.83290 0.89895 0.87584 0.93895 0.94391 0.90209 0.91935 0.89747 0.93597 0.90002 0.90418 0.90539 0.93364 0.90320 0.86090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.99 13.05 21.67 0.28 -48.70 16 2 C -0.01 -0.48 5.50 84.93 0.47 -0.01 16 3 Si 0.99 42.94 29.55 68.60 2.03 44.96 16 4 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 5 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 6 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 7 C -0.34 -18.97 9.68 84.04 0.81 -18.16 16 8 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 9 N -0.57 -28.28 5.10 -306.98 -1.57 -29.85 16 10 C 0.44 20.01 7.07 87.66 0.62 20.63 16 11 O -0.63 -33.44 15.09 -3.07 -0.05 -33.49 16 12 C -0.11 -3.20 3.54 -10.48 -0.04 -3.24 16 13 H 0.15 3.39 8.14 -2.39 -0.02 3.37 16 14 C -0.14 -4.27 6.40 30.62 0.20 -4.07 16 15 C 0.51 18.15 7.41 87.93 0.65 18.80 16 16 O -0.58 -24.39 15.11 -3.04 -0.05 -24.44 16 17 N -0.61 -18.56 2.83 -793.92 -2.25 -20.81 16 18 C 0.16 4.24 2.75 44.99 0.12 4.36 16 19 C -0.13 -4.13 5.21 30.59 0.16 -3.97 16 20 C -0.11 -2.45 5.92 30.60 0.18 -2.26 16 21 C -0.12 -2.29 5.92 30.59 0.18 -2.11 16 22 C -0.11 -1.85 5.92 30.59 0.18 -1.67 16 23 C -0.13 -2.87 5.21 30.59 0.16 -2.71 16 24 C 0.12 3.22 6.66 86.83 0.58 3.79 16 25 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 26 H 0.40 18.83 7.90 -92.71 -0.73 18.10 16 27 H 0.15 3.19 8.14 -2.39 -0.02 3.17 16 28 H 0.08 2.96 7.75 -2.38 -0.02 2.95 16 29 H 0.11 2.37 8.07 -2.39 -0.02 2.36 16 30 H 0.04 1.61 6.80 -2.39 -0.02 1.59 16 31 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.05 1.43 6.77 -2.39 -0.02 1.41 16 40 H 0.08 2.43 6.98 -2.38 -0.02 2.42 16 41 H 0.12 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -72.81 328.55 2.98 -69.84 By element: Atomic # 1 Polarization: 32.81 SS G_CDS: 0.30 Total: 33.10 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: 4.28 Total: 9.38 kcal Atomic # 7 Polarization: -95.83 SS G_CDS: -3.53 Total: -99.36 kcal Atomic # 8 Polarization: -57.83 SS G_CDS: -0.09 Total: -57.92 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.96 kcal Total: -72.81 2.98 -69.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006613440.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.817 kcal (2) G-P(sol) polarization free energy of solvation -72.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds