Wall clock time and date at job start Tue Mar 31 2020 02:23:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86801 * 120.00589 * 2 1 4 4 H 1.48501 * 109.46837 * 270.00151 * 3 2 1 5 5 H 1.48497 * 109.46996 * 29.99507 * 3 2 1 6 6 H 1.48497 * 109.47665 * 150.00064 * 3 2 1 7 7 C 1.37881 * 119.99751 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99831 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00131 * 179.97438 * 7 2 1 10 10 N 1.46497 * 109.47291 * 180.02562 * 9 7 2 11 11 C 1.33914 * 124.19987 * 270.02555 * 10 9 7 12 12 O 1.21539 * 123.79493 * 359.97438 * 11 10 9 13 13 N 1.34771 * 112.40558 * 179.97438 * 11 10 9 14 14 C 1.46603 * 106.36680 * 359.97438 * 13 11 10 15 15 C 1.52653 * 110.88266 * 241.16485 * 14 13 11 16 16 C 1.53046 * 109.49431 * 281.29247 * 15 14 13 17 17 C 1.52947 * 109.27557 * 247.30805 * 16 15 14 18 18 C 1.53102 * 109.49092 * 75.53245 * 17 16 15 19 19 C 1.53057 * 109.52495 * 284.05262 * 18 17 16 20 20 C 1.53008 * 109.48977 * 113.18844 * 19 18 17 21 21 C 1.52813 * 110.76560 * 118.65694 * 14 13 11 22 22 C 1.34955 * 124.20161 * 89.99880 * 10 9 7 23 23 O 1.21226 * 127.29877 * 0.02562 * 22 10 9 24 24 H 0.97007 * 119.99713 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47133 * 60.00060 * 9 7 2 26 26 H 1.08998 * 109.47258 * 300.00237 * 9 7 2 27 27 H 0.96996 * 126.81175 * 180.02562 * 13 11 10 28 28 H 1.08998 * 109.46781 * 161.28351 * 15 14 13 29 29 H 1.09005 * 109.46303 * 41.29952 * 15 14 13 30 30 H 1.08993 * 109.50677 * 7.24894 * 16 15 14 31 31 H 1.09007 * 109.49932 * 127.33012 * 16 15 14 32 32 H 1.09003 * 109.46486 * 195.53630 * 17 16 15 33 33 H 1.09003 * 109.46837 * 315.52564 * 17 16 15 34 34 H 1.09005 * 109.46017 * 44.06329 * 18 17 16 35 35 H 1.08990 * 109.46146 * 164.03648 * 18 17 16 36 36 H 1.09001 * 109.46398 * 233.18798 * 19 18 17 37 37 H 1.08996 * 109.47078 * 353.18208 * 19 18 17 38 38 H 1.08996 * 109.47606 * 76.07773 * 20 19 18 39 39 H 1.09005 * 109.46752 * 196.08345 * 20 19 18 40 40 H 1.09000 * 109.54439 * 78.81172 * 21 14 13 41 41 H 1.09002 * 109.54183 * 318.55081 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5114 -1.1942 0.0000 10 7 3.9997 -2.5754 0.0001 11 6 4.2505 -3.2850 1.1077 12 8 4.0991 -2.8554 2.2345 13 7 4.6897 -4.5290 0.8323 14 6 4.7277 -4.6397 -0.6290 15 6 3.7922 -5.7434 -1.1157 16 6 4.4601 -7.1054 -0.9130 17 6 4.7685 -7.7245 -2.2771 18 6 5.9847 -7.0265 -2.8918 19 6 5.5698 -5.6548 -3.4292 20 6 6.2456 -4.5575 -2.6043 21 6 6.1516 -4.9070 -1.1152 22 6 4.2521 -3.2909 -1.1160 23 8 4.1238 -2.9284 -2.2657 24 1 -0.4850 0.8401 0.0004 25 1 3.8751 -0.6798 0.8895 26 1 3.8745 -0.6810 -0.8905 27 1 4.9318 -5.2152 1.4738 28 1 3.5782 -5.5976 -2.1745 29 1 2.8618 -5.7070 -0.5488 30 1 5.3869 -6.9767 -0.3540 31 1 3.7887 -7.7610 -0.3585 32 1 4.9826 -8.7862 -2.1542 33 1 3.9080 -7.6013 -2.9349 34 1 6.7544 -6.9005 -2.1302 35 1 6.3773 -7.6328 -3.7080 36 1 5.8752 -5.5656 -4.4718 37 1 4.4874 -5.5486 -3.3574 38 1 7.2935 -4.4787 -2.8936 39 1 5.7457 -3.6061 -2.7865 40 1 6.3941 -5.9600 -0.9719 41 1 6.8513 -4.2903 -0.5512 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019483345.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:23:35 Heat of formation + Delta-G solvation = -35.746794 kcal Electronic energy + Delta-G solvation = -23671.600519 eV Core-core repulsion = 20359.694691 eV Total energy + Delta-G solvation = -3311.905828 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.29093 -39.01190 -37.79785 -35.59215 -34.56956 -32.98941 -32.50874 -30.98561 -28.51612 -26.92422 -26.01460 -23.59605 -22.77606 -21.82686 -20.72389 -19.75612 -19.46867 -17.47908 -17.25457 -16.41250 -16.05493 -15.66405 -15.14232 -14.91905 -14.55817 -14.21700 -13.92095 -13.77133 -13.69048 -13.29891 -13.13386 -12.50540 -12.42638 -12.13577 -11.96009 -11.58793 -11.45240 -11.31323 -11.10539 -10.93084 -10.69931 -10.66828 -10.53993 -10.28351 -10.15092 -9.87942 -9.65349 -9.26149 -9.11664 -8.66366 -8.61581 -6.15825 -4.17302 2.14847 2.87380 3.26438 3.33105 3.34154 3.56509 3.69492 4.27206 4.33719 4.49707 4.62191 4.83662 4.88172 4.90962 4.99496 5.06327 5.14363 5.16749 5.47771 5.50727 5.65013 5.68736 5.75678 5.78416 5.85543 5.92642 5.96648 6.02835 6.11731 6.19935 6.29225 6.32662 6.48728 6.54456 6.64986 6.77058 7.15851 7.42300 7.80892 7.99929 8.33887 8.73509 8.84105 9.40835 10.97103 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.026007 B = 0.005459 C = 0.005202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.377448 B = 5127.681943 C = 5381.182273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.079 3.921 3 Si 0.874 3.126 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.263 1.263 7 C -0.537 4.537 8 H 0.076 0.924 9 C 0.219 3.781 10 N -0.553 5.553 11 C 0.702 3.298 12 O -0.541 6.541 13 N -0.730 5.730 14 C 0.123 3.877 15 C -0.125 4.125 16 C -0.122 4.122 17 C -0.121 4.121 18 C -0.129 4.129 19 C -0.125 4.125 20 C -0.145 4.145 21 C -0.129 4.129 22 C 0.530 3.470 23 O -0.463 6.463 24 H 0.267 0.733 25 H 0.051 0.949 26 H 0.045 0.955 27 H 0.431 0.569 28 H 0.098 0.902 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.057 0.943 36 H 0.059 0.941 37 H 0.076 0.924 38 H 0.062 0.938 39 H 0.100 0.900 40 H 0.100 0.900 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.673 -15.150 -4.630 20.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.125 4.125 3 Si 0.701 3.299 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.188 1.188 7 C -0.575 4.575 8 H 0.094 0.906 9 C 0.100 3.900 10 N -0.296 5.296 11 C 0.403 3.597 12 O -0.414 6.414 13 N -0.395 5.395 14 C 0.032 3.968 15 C -0.163 4.163 16 C -0.159 4.159 17 C -0.158 4.158 18 C -0.166 4.166 19 C -0.162 4.162 20 C -0.183 4.183 21 C -0.167 4.167 22 C 0.317 3.683 23 O -0.334 6.334 24 H 0.077 0.923 25 H 0.069 0.931 26 H 0.063 0.937 27 H 0.274 0.726 28 H 0.116 0.884 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.094 0.906 38 H 0.081 0.919 39 H 0.118 0.882 40 H 0.117 0.883 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 13.293 -14.429 -4.646 20.161 hybrid contribution 0.301 0.585 0.366 0.753 sum 13.594 -13.844 -4.280 19.869 Atomic orbital electron populations 1.69876 1.06176 1.27269 1.49441 1.24779 0.94823 0.98919 0.93986 0.86867 0.80540 0.83639 0.78900 1.19680 1.20605 1.18756 1.21110 0.88230 0.95324 1.52842 0.90555 1.19935 0.96762 0.74479 0.98807 1.46550 1.59238 1.17205 1.06636 1.16020 0.77629 0.81306 0.84778 1.90958 1.56747 1.72951 1.20737 1.45536 1.72349 1.14844 1.06748 1.21114 0.98472 0.95577 0.81668 1.22102 0.97842 0.92640 1.03744 1.21769 1.00918 0.95555 0.97682 1.21743 0.98563 0.99005 0.96498 1.21890 0.97982 0.96420 1.00307 1.21826 1.01810 0.93652 0.98948 1.22078 1.01227 1.01974 0.93003 1.22265 0.92817 1.04065 0.97516 1.20434 0.76287 0.86271 0.85354 1.90633 1.49437 1.75567 1.17795 0.92277 0.93107 0.93737 0.72574 0.88394 0.90592 0.90955 0.91622 0.92217 0.91530 0.91124 0.92457 0.92249 0.90584 0.91947 0.88238 0.88251 0.91162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.44 13.96 55.43 0.77 -26.66 16 2 C 0.08 2.30 5.47 -17.82 -0.10 2.20 16 3 Si 0.87 21.42 27.47 -169.99 -4.67 16.75 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 6 H -0.26 -6.17 6.54 56.52 0.37 -5.81 16 7 C -0.54 -15.70 9.94 -34.44 -0.34 -16.04 16 8 H 0.08 2.45 8.06 -52.49 -0.42 2.02 16 9 C 0.22 5.51 4.53 -5.20 -0.02 5.48 16 10 N -0.55 -12.08 2.60 -122.07 -0.32 -12.40 16 11 C 0.70 14.29 8.63 -87.69 -0.76 13.54 16 12 O -0.54 -12.92 17.49 5.33 0.09 -12.83 16 13 N -0.73 -10.56 5.91 -53.76 -0.32 -10.88 16 14 C 0.12 1.70 0.72 -133.00 -0.10 1.61 16 15 C -0.13 -1.52 4.50 -26.89 -0.12 -1.64 16 16 C -0.12 -1.06 5.49 -26.73 -0.15 -1.21 16 17 C -0.12 -0.96 5.59 -26.71 -0.15 -1.11 16 18 C -0.13 -1.04 5.47 -26.65 -0.15 -1.19 16 19 C -0.13 -1.28 5.48 -26.70 -0.15 -1.43 16 20 C -0.15 -1.67 5.42 -26.60 -0.14 -1.81 16 21 C -0.13 -1.41 4.74 -26.70 -0.13 -1.54 16 22 C 0.53 10.09 6.43 -10.72 -0.07 10.02 16 23 O -0.46 -9.57 14.95 5.60 0.08 -9.48 16 24 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 25 H 0.05 1.29 6.92 -51.93 -0.36 0.94 16 26 H 0.04 1.09 7.44 -51.93 -0.39 0.70 16 27 H 0.43 4.81 8.96 -40.82 -0.37 4.44 16 28 H 0.10 1.24 4.59 -51.93 -0.24 1.01 16 29 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 30 H 0.07 0.56 5.52 -51.93 -0.29 0.27 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.56 7.48 -51.93 -0.39 0.17 16 34 H 0.07 0.54 5.45 -51.93 -0.28 0.25 16 35 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.08 0.89 4.67 -51.93 -0.24 0.64 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.10 1.47 4.58 -51.93 -0.24 1.23 16 40 H 0.10 0.86 2.90 -51.93 -0.15 0.71 16 41 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 307.40 15.07 4.63 4.63 Total: -1.00 -33.55 307.40 -7.57 -41.12 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -5.49 Total: 2.87 kcal Atomic # 6 Polarization: 9.25 SS G_CDS: -2.36 Total: 6.88 kcal Atomic # 7 Polarization: -50.08 SS G_CDS: 0.14 Total: -49.94 kcal Atomic # 8 Polarization: -22.49 SS G_CDS: 0.18 Total: -22.31 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.67 Total: 16.75 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -33.55 -7.57 -41.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019483345.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.376 kcal (2) G-P(sol) polarization free energy of solvation -33.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds