Wall clock time and date at job start Tue Mar 31 2020 02:23:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86801 * 120.00589 * 2 1 4 4 H 1.48501 * 109.46837 * 270.00151 * 3 2 1 5 5 H 1.48497 * 109.46996 * 29.99507 * 3 2 1 6 6 H 1.48497 * 109.47665 * 150.00064 * 3 2 1 7 7 C 1.37881 * 119.99751 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99831 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00131 * 179.97438 * 7 2 1 10 10 N 1.46497 * 109.47291 * 180.02562 * 9 7 2 11 11 C 1.33914 * 124.19987 * 270.02555 * 10 9 7 12 12 O 1.21539 * 123.79493 * 359.97438 * 11 10 9 13 13 N 1.34771 * 112.40558 * 179.97438 * 11 10 9 14 14 C 1.46603 * 106.36680 * 359.97438 * 13 11 10 15 15 C 1.52653 * 110.88266 * 241.16485 * 14 13 11 16 16 C 1.53046 * 109.49431 * 281.29247 * 15 14 13 17 17 C 1.52947 * 109.27557 * 247.30805 * 16 15 14 18 18 C 1.53102 * 109.49092 * 75.53245 * 17 16 15 19 19 C 1.53057 * 109.52495 * 284.05262 * 18 17 16 20 20 C 1.53008 * 109.48977 * 113.18844 * 19 18 17 21 21 C 1.52813 * 110.76560 * 118.65694 * 14 13 11 22 22 C 1.34955 * 124.20161 * 89.99880 * 10 9 7 23 23 O 1.21226 * 127.29877 * 0.02562 * 22 10 9 24 24 H 0.97007 * 119.99713 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47133 * 60.00060 * 9 7 2 26 26 H 1.08998 * 109.47258 * 300.00237 * 9 7 2 27 27 H 0.96996 * 126.81175 * 180.02562 * 13 11 10 28 28 H 1.08998 * 109.46781 * 161.28351 * 15 14 13 29 29 H 1.09005 * 109.46303 * 41.29952 * 15 14 13 30 30 H 1.08993 * 109.50677 * 7.24894 * 16 15 14 31 31 H 1.09007 * 109.49932 * 127.33012 * 16 15 14 32 32 H 1.09003 * 109.46486 * 195.53630 * 17 16 15 33 33 H 1.09003 * 109.46837 * 315.52564 * 17 16 15 34 34 H 1.09005 * 109.46017 * 44.06329 * 18 17 16 35 35 H 1.08990 * 109.46146 * 164.03648 * 18 17 16 36 36 H 1.09001 * 109.46398 * 233.18798 * 19 18 17 37 37 H 1.08996 * 109.47078 * 353.18208 * 19 18 17 38 38 H 1.08996 * 109.47606 * 76.07773 * 20 19 18 39 39 H 1.09005 * 109.46752 * 196.08345 * 20 19 18 40 40 H 1.09000 * 109.54439 * 78.81172 * 21 14 13 41 41 H 1.09002 * 109.54183 * 318.55081 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5114 -1.1942 0.0000 10 7 3.9997 -2.5754 0.0001 11 6 4.2505 -3.2850 1.1077 12 8 4.0991 -2.8554 2.2345 13 7 4.6897 -4.5290 0.8323 14 6 4.7277 -4.6397 -0.6290 15 6 3.7922 -5.7434 -1.1157 16 6 4.4601 -7.1054 -0.9130 17 6 4.7685 -7.7245 -2.2771 18 6 5.9847 -7.0265 -2.8918 19 6 5.5698 -5.6548 -3.4292 20 6 6.2456 -4.5575 -2.6043 21 6 6.1516 -4.9070 -1.1152 22 6 4.2521 -3.2909 -1.1160 23 8 4.1238 -2.9284 -2.2657 24 1 -0.4850 0.8401 0.0004 25 1 3.8751 -0.6798 0.8895 26 1 3.8745 -0.6810 -0.8905 27 1 4.9318 -5.2152 1.4738 28 1 3.5782 -5.5976 -2.1745 29 1 2.8618 -5.7070 -0.5488 30 1 5.3869 -6.9767 -0.3540 31 1 3.7887 -7.7610 -0.3585 32 1 4.9826 -8.7862 -2.1542 33 1 3.9080 -7.6013 -2.9349 34 1 6.7544 -6.9005 -2.1302 35 1 6.3773 -7.6328 -3.7080 36 1 5.8752 -5.5656 -4.4718 37 1 4.4874 -5.5486 -3.3574 38 1 7.2935 -4.4787 -2.8936 39 1 5.7457 -3.6061 -2.7865 40 1 6.3941 -5.9600 -0.9719 41 1 6.8513 -4.2903 -0.5512 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019483345.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:23:34 Heat of formation + Delta-G solvation = -59.845251 kcal Electronic energy + Delta-G solvation = -23672.645507 eV Core-core repulsion = 20359.694691 eV Total energy + Delta-G solvation = -3312.950816 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.72896 -40.24602 -39.21696 -37.12964 -36.20123 -34.57945 -33.82604 -32.11663 -30.50218 -27.80054 -27.12222 -25.32446 -24.26633 -22.97194 -21.71820 -21.14701 -20.54377 -19.37940 -18.96147 -17.74699 -17.42836 -17.01368 -16.70247 -16.48513 -16.01162 -15.58185 -15.31358 -14.87896 -14.64514 -14.60619 -14.32760 -14.16572 -13.97375 -13.49234 -13.35532 -13.00887 -12.60740 -12.52285 -12.41111 -12.24466 -11.98697 -11.88771 -11.79395 -11.69147 -11.44739 -11.26465 -10.91364 -10.74924 -10.69937 -10.44321 -10.30283 -8.43002 -6.52223 0.62623 1.27915 1.31963 1.38481 1.45043 2.05364 2.24976 2.25315 2.89178 2.95092 3.51355 3.60157 3.99709 4.08576 4.15307 4.16569 4.19987 4.24223 4.38395 4.49315 4.62821 4.69875 4.74487 4.80408 4.87061 4.91413 4.96471 5.08786 5.09192 5.18356 5.23750 5.33223 5.38034 5.45492 5.53912 5.58837 5.71726 5.85772 6.02485 6.23999 6.46350 6.50989 7.08237 7.20931 8.73809 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.026007 B = 0.005459 C = 0.005202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.377448 B = 5127.681943 C = 5381.182273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.019 3.981 3 Si 0.948 3.052 4 H -0.257 1.257 5 H -0.271 1.271 6 H -0.246 1.246 7 C -0.552 4.552 8 H 0.027 0.973 9 C 0.228 3.772 10 N -0.572 5.572 11 C 0.696 3.304 12 O -0.584 6.584 13 N -0.698 5.698 14 C 0.136 3.864 15 C -0.125 4.125 16 C -0.115 4.115 17 C -0.119 4.119 18 C -0.124 4.124 19 C -0.126 4.126 20 C -0.145 4.145 21 C -0.121 4.121 22 C 0.516 3.484 23 O -0.485 6.485 24 H 0.273 0.727 25 H 0.049 0.951 26 H 0.052 0.948 27 H 0.451 0.549 28 H 0.092 0.908 29 H 0.055 0.945 30 H 0.091 0.909 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.057 0.943 34 H 0.084 0.916 35 H 0.070 0.930 36 H 0.061 0.939 37 H 0.056 0.944 38 H 0.083 0.917 39 H 0.063 0.937 40 H 0.135 0.865 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.514 -16.695 -4.905 23.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.180 4.180 3 Si 0.769 3.231 4 H -0.181 1.181 5 H -0.196 1.196 6 H -0.170 1.170 7 C -0.590 4.590 8 H 0.046 0.954 9 C 0.107 3.893 10 N -0.315 5.315 11 C 0.397 3.603 12 O -0.460 6.460 13 N -0.364 5.364 14 C 0.045 3.955 15 C -0.163 4.163 16 C -0.152 4.152 17 C -0.157 4.157 18 C -0.161 4.161 19 C -0.163 4.163 20 C -0.183 4.183 21 C -0.158 4.158 22 C 0.305 3.695 23 O -0.357 6.357 24 H 0.082 0.918 25 H 0.067 0.933 26 H 0.070 0.930 27 H 0.298 0.702 28 H 0.110 0.890 29 H 0.074 0.926 30 H 0.109 0.891 31 H 0.095 0.905 32 H 0.100 0.900 33 H 0.075 0.925 34 H 0.102 0.898 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.101 0.899 39 H 0.082 0.918 40 H 0.153 0.847 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 16.164 -16.059 -4.942 23.315 hybrid contribution -0.671 0.992 0.368 1.253 sum 15.493 -15.067 -4.573 22.090 Atomic orbital electron populations 1.70022 1.08191 1.28822 1.50454 1.25823 0.95801 1.03369 0.93045 0.85716 0.79620 0.77874 0.79910 1.18103 1.19586 1.16956 1.21280 0.90530 0.93791 1.53357 0.95414 1.19569 0.93956 0.77006 0.98789 1.46609 1.59861 1.16693 1.08376 1.16179 0.77701 0.82677 0.83763 1.90918 1.58845 1.74208 1.22055 1.45345 1.70392 1.13004 1.07627 1.21272 1.00883 0.92700 0.80621 1.22170 0.97024 0.94196 1.02900 1.21779 1.01555 0.93057 0.98781 1.21742 0.98223 1.00143 0.95575 1.21867 0.98217 0.94854 1.01113 1.21826 1.00442 0.94860 0.99202 1.22031 1.02122 1.00638 0.93520 1.22361 0.90080 1.06307 0.97062 1.21380 0.75650 0.87893 0.84536 1.90623 1.50082 1.76498 1.18517 0.91761 0.93330 0.92970 0.70173 0.89034 0.92571 0.89103 0.90453 0.90046 0.92470 0.89795 0.91090 0.91983 0.92580 0.89871 0.91834 0.84739 0.90659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.71 13.96 21.45 0.30 -59.41 16 2 C 0.02 1.15 5.47 84.66 0.46 1.62 16 3 Si 0.95 44.54 27.47 68.60 1.88 46.42 16 4 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 5 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 6 H -0.25 -10.82 6.54 99.48 0.65 -10.17 16 7 C -0.55 -33.77 9.94 25.60 0.25 -33.52 16 8 H 0.03 1.90 8.06 -2.91 -0.02 1.88 16 9 C 0.23 11.74 4.53 85.63 0.39 12.12 16 10 N -0.57 -25.66 2.60 -777.19 -2.02 -27.68 16 11 C 0.70 28.68 8.63 179.32 1.55 30.23 16 12 O -0.58 -28.46 17.49 -3.84 -0.07 -28.52 16 13 N -0.70 -19.31 5.91 -442.28 -2.61 -21.93 16 14 C 0.14 3.60 0.72 2.78 0.00 3.60 16 15 C -0.12 -2.89 4.50 30.49 0.14 -2.76 16 16 C -0.11 -1.59 5.49 30.59 0.17 -1.42 16 17 C -0.12 -1.46 5.59 30.61 0.17 -1.29 16 18 C -0.12 -1.51 5.47 30.65 0.17 -1.34 16 19 C -0.13 -2.33 5.48 30.62 0.17 -2.16 16 20 C -0.15 -3.06 5.42 30.68 0.17 -2.89 16 21 C -0.12 -2.28 4.74 30.61 0.15 -2.14 16 22 C 0.52 20.05 6.43 87.75 0.56 20.61 16 23 O -0.49 -20.74 14.95 -2.86 -0.04 -20.79 16 24 H 0.27 16.03 8.31 -92.70 -0.77 15.26 16 25 H 0.05 2.51 6.92 -2.39 -0.02 2.49 16 26 H 0.05 2.58 7.44 -2.39 -0.02 2.57 16 27 H 0.45 8.90 8.96 -92.71 -0.83 8.07 16 28 H 0.09 2.32 4.59 -2.39 -0.01 2.31 16 29 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 30 H 0.09 0.94 5.52 -2.39 -0.01 0.93 16 31 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 32 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.06 0.83 7.48 -2.39 -0.02 0.81 16 34 H 0.08 0.82 5.45 -2.38 -0.01 0.80 16 35 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.06 1.27 4.67 -2.39 -0.01 1.26 16 38 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.06 1.86 4.58 -2.38 -0.01 1.85 16 40 H 0.14 1.65 2.90 -2.39 -0.01 1.64 16 41 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -78.02 307.40 1.97 -76.05 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: 0.19 Total: 15.19 kcal Atomic # 6 Polarization: 16.33 SS G_CDS: 4.34 Total: 20.67 kcal Atomic # 7 Polarization: -104.69 SS G_CDS: -4.33 Total: -109.02 kcal Atomic # 8 Polarization: -49.20 SS G_CDS: -0.11 Total: -49.31 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 1.88 Total: 46.42 kcal Total: -78.02 1.97 -76.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019483345.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.203 kcal (2) G-P(sol) polarization free energy of solvation -78.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds