Wall clock time and date at job start Tue Mar 31 2020 02:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30736 * 1 3 3 Si 1.86802 * 119.99806 * 2 1 4 4 H 1.48493 * 109.47112 * 240.00344 * 3 2 1 5 5 H 1.48500 * 109.47175 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46885 * 120.00245 * 3 2 1 7 7 C 1.40149 * 119.99996 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99571 * 165.49473 * 7 2 1 9 9 C 1.40450 * 120.00313 * 345.50178 * 7 2 1 10 10 C 1.40532 * 120.71430 * 329.70990 * 9 7 2 11 11 C 1.38146 * 120.42517 * 180.02562 * 10 9 7 12 12 C 1.37670 * 121.79530 * 359.97438 * 11 10 9 13 13 C 1.50700 * 119.60620 * 180.02562 * 12 11 10 14 14 C 1.53004 * 109.47231 * 294.74964 * 13 12 11 15 15 C 1.52999 * 109.47382 * 179.97438 * 14 13 12 16 16 C 1.52993 * 109.46976 * 299.99703 * 15 14 13 17 17 C 1.53004 * 109.47467 * 60.00032 * 16 15 14 18 18 C 1.53001 * 109.46993 * 54.74052 * 13 12 11 19 19 C 1.40643 * 120.79643 * 0.27917 * 12 11 10 20 20 C 1.40517 * 121.16877 * 180.27684 * 19 12 11 21 21 C 1.36332 * 119.77215 * 179.73381 * 20 19 12 22 22 C 1.39078 * 120.93125 * 359.72659 * 21 20 19 23 23 C 1.37685 * 120.71448 * 0.02562 * 22 21 20 24 24 C 1.39531 * 119.56240 * 359.97438 * 23 22 21 25 25 H 0.97000 * 120.00076 * 359.97438 * 1 2 3 26 26 H 1.08000 * 119.78663 * 0.02562 * 10 9 7 27 27 H 1.08001 * 119.10565 * 179.97438 * 11 10 9 28 28 H 1.08997 * 109.47558 * 174.74540 * 13 12 11 29 29 H 1.08997 * 109.47196 * 59.99354 * 14 13 12 30 30 H 1.09002 * 109.46698 * 299.99796 * 14 13 12 31 31 H 1.09005 * 109.46656 * 59.99672 * 15 14 13 32 32 H 1.08997 * 109.46957 * 179.97438 * 15 14 13 33 33 H 1.09000 * 109.47130 * 180.02562 * 16 15 14 34 34 H 1.08997 * 109.47120 * 300.00048 * 16 15 14 35 35 H 1.09006 * 109.46883 * 59.99788 * 17 16 15 36 36 H 1.08991 * 109.47447 * 180.02562 * 17 16 15 37 37 H 1.09005 * 109.46298 * 60.00651 * 18 13 12 38 38 H 1.08997 * 109.47366 * 300.00605 * 18 13 12 39 39 H 1.07998 * 120.10875 * 359.44094 * 20 19 12 40 40 H 1.07996 * 119.53277 * 179.70702 * 21 20 19 41 41 H 1.08004 * 119.64224 * 180.02562 * 22 21 20 42 42 H 1.08004 * 120.21593 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 3.0950 1.6965 -1.2125 5 1 1.2763 2.7465 0.0006 6 1 3.0951 1.6964 1.2125 7 6 2.0081 -1.2137 -0.0005 8 1 3.0623 -1.2285 -0.2348 9 6 1.3395 -2.4109 0.3034 10 6 0.2407 -2.4168 1.1796 11 6 -0.4122 -3.5979 1.4748 12 6 -0.0193 -4.7997 0.9303 13 6 -0.7676 -6.0584 1.2860 14 6 -0.5812 -6.3592 2.7746 15 6 -1.3415 -7.6368 3.1360 16 6 -2.8297 -7.4465 2.8367 17 6 -3.0163 -7.1458 1.3482 18 6 -2.2560 -5.8687 0.9868 19 6 1.0755 -4.8677 0.0500 20 6 1.4797 -6.0892 -0.5149 21 6 2.5416 -6.1216 -1.3692 22 6 3.2312 -4.9590 -1.6967 23 6 2.8570 -3.7457 -1.1642 24 6 1.7736 -3.6836 -0.2871 25 1 -0.4850 0.8400 0.0004 26 1 -0.0953 -1.4921 1.6250 27 1 -1.2539 -3.5779 2.1513 28 1 -0.3815 -6.8898 0.6963 29 1 -0.9673 -5.5279 3.3644 30 1 0.4792 -6.4943 2.9879 31 1 -0.9556 -8.4683 2.5461 32 1 -1.2082 -7.8512 4.1963 33 1 -3.3715 -8.3565 3.0946 34 1 -3.2155 -6.6150 3.4265 35 1 -2.6305 -7.9773 0.7584 36 1 -4.0765 -7.0097 1.1351 37 1 -2.3889 -5.6545 -0.0737 38 1 -2.6422 -5.0374 1.5765 39 1 0.9538 -7.0000 -0.2694 40 1 2.8519 -7.0632 -1.7973 41 1 4.0694 -5.0086 -2.3761 42 1 3.3985 -2.8480 -1.4238 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000038601502.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:15:42 Heat of formation + Delta-G solvation = -3.043004 kcal Electronic energy + Delta-G solvation = -21574.513368 eV Core-core repulsion = 18674.874945 eV Total energy + Delta-G solvation = -2899.638423 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.152 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.26772 -37.72474 -35.29807 -33.92377 -31.88299 -30.36776 -29.64029 -28.98207 -28.03865 -25.03307 -22.34724 -22.14138 -21.87228 -21.56855 -19.91830 -18.92723 -17.20379 -16.05968 -15.94754 -15.18028 -15.02535 -14.29345 -13.88468 -13.79777 -13.53384 -13.07411 -12.97298 -12.57168 -12.20993 -12.10208 -11.90001 -11.84012 -11.79931 -11.51593 -11.32655 -11.01013 -10.82514 -10.76367 -10.71527 -10.55869 -10.09909 -10.00210 -9.85460 -9.64877 -9.33660 -9.21724 -9.14237 -8.39444 -7.35074 -7.02078 -6.67966 -4.41429 1.85242 2.40339 2.86926 2.95235 2.97919 3.36597 3.75561 4.20933 4.68605 5.01675 5.12567 5.13607 5.54030 5.58475 5.69642 5.74487 5.83059 5.85358 5.88136 5.91633 6.00151 6.05459 6.07029 6.27955 6.30179 6.33377 6.39618 6.48315 6.54191 6.55213 6.62896 6.65489 6.78773 6.83971 6.89667 6.92539 7.07217 7.24755 7.41309 7.48397 7.51130 7.66690 7.88801 7.95829 8.16643 8.20245 8.49565 8.63658 8.80162 9.93225 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.018047 B = 0.005449 C = 0.004456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.117943 B = 5136.922668 C = 6282.577348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.073 3.927 3 Si 0.914 3.086 4 H -0.262 1.262 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.434 4.434 8 H 0.084 0.916 9 C 0.129 3.871 10 C -0.222 4.222 11 C -0.041 4.041 12 C -0.235 4.235 13 C -0.021 4.021 14 C -0.108 4.108 15 C -0.119 4.119 16 C -0.117 4.117 17 C -0.119 4.119 18 C -0.109 4.109 19 C 0.013 3.987 20 C -0.157 4.157 21 C -0.114 4.114 22 C -0.197 4.197 23 C -0.063 4.063 24 C -0.117 4.117 25 H 0.286 0.714 26 H 0.111 0.889 27 H 0.085 0.915 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.052 0.948 34 H 0.058 0.942 35 H 0.056 0.944 36 H 0.053 0.947 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.108 0.892 40 H 0.099 0.901 41 H 0.100 0.900 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.012 -7.319 2.403 7.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.392 5.392 2 C -0.148 4.148 3 Si 0.737 3.263 4 H -0.187 1.187 5 H -0.200 1.200 6 H -0.185 1.185 7 C -0.461 4.461 8 H 0.102 0.898 9 C 0.126 3.874 10 C -0.242 4.242 11 C -0.060 4.060 12 C -0.237 4.237 13 C -0.039 4.039 14 C -0.146 4.146 15 C -0.157 4.157 16 C -0.155 4.155 17 C -0.157 4.157 18 C -0.147 4.147 19 C 0.013 3.987 20 C -0.176 4.176 21 C -0.132 4.132 22 C -0.215 4.215 23 C -0.081 4.081 24 C -0.118 4.118 25 H 0.098 0.902 26 H 0.129 0.871 27 H 0.103 0.897 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.126 0.874 40 H 0.117 0.883 41 H 0.118 0.882 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -2.236 -7.138 2.387 7.851 hybrid contribution 0.260 0.817 -0.100 0.863 sum -1.976 -6.321 2.287 7.006 Atomic orbital electron populations 1.69779 1.07780 1.30040 1.31590 1.26038 0.94857 1.01622 0.92322 0.86261 0.80160 0.79564 0.80307 1.18662 1.20033 1.18489 1.19550 0.97219 0.90787 1.38550 0.89750 1.18590 0.91114 0.89995 0.87684 1.20900 1.02390 0.96481 1.04398 1.20346 0.96590 0.92502 0.96530 1.18846 1.02039 0.93849 1.08920 1.19735 0.93489 0.96015 0.94658 1.21617 0.99513 0.96441 0.97006 1.21564 0.95345 0.98586 1.00168 1.21514 0.96518 1.00661 0.96765 1.21558 0.99528 0.98635 0.95943 1.21619 0.95469 0.96520 1.01071 1.17591 0.94182 0.91903 0.94978 1.20828 0.99064 0.97019 1.00642 1.20477 0.96731 0.97078 0.98916 1.20669 1.02571 0.93142 1.05155 1.21067 0.95180 0.96713 0.95127 1.19235 0.98342 0.93688 1.00518 0.90239 0.87146 0.89721 0.91779 0.92361 0.92434 0.92491 0.92808 0.92910 0.92284 0.92490 0.92776 0.92356 0.92265 0.87385 0.88334 0.88152 0.86780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.91 11.17 55.56 0.62 -18.29 16 2 C 0.07 1.72 5.17 -17.30 -0.09 1.63 16 3 Si 0.91 17.55 29.59 -169.99 -5.03 12.52 16 4 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 5 H -0.28 -5.16 7.11 56.52 0.40 -4.76 16 6 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 7 C -0.43 -10.84 8.38 -38.03 -0.32 -11.15 16 8 H 0.08 2.00 6.90 -52.48 -0.36 1.63 16 9 C 0.13 3.33 5.67 -104.71 -0.59 2.74 16 10 C -0.22 -5.60 8.66 -38.75 -0.34 -5.93 16 11 C -0.04 -0.93 8.62 -39.82 -0.34 -1.28 16 12 C -0.24 -5.08 4.85 -103.92 -0.50 -5.58 16 13 C -0.02 -0.36 2.21 -91.77 -0.20 -0.57 16 14 C -0.11 -1.71 5.06 -26.73 -0.14 -1.85 16 15 C -0.12 -1.55 5.92 -26.73 -0.16 -1.70 16 16 C -0.12 -1.44 5.92 -26.73 -0.16 -1.59 16 17 C -0.12 -1.57 5.92 -26.75 -0.16 -1.73 16 18 C -0.11 -1.77 4.95 -26.75 -0.13 -1.90 16 19 C 0.01 0.31 5.74 -106.87 -0.61 -0.30 16 20 C -0.16 -3.20 9.35 -39.41 -0.37 -3.56 16 21 C -0.11 -2.17 9.95 -39.96 -0.40 -2.57 16 22 C -0.20 -3.89 10.02 -39.47 -0.40 -4.28 16 23 C -0.06 -1.39 9.46 -39.30 -0.37 -1.76 16 24 C -0.12 -2.87 5.90 -104.67 -0.62 -3.49 16 25 H 0.29 6.38 8.29 -40.82 -0.34 6.04 16 26 H 0.11 2.87 6.48 -52.49 -0.34 2.52 16 27 H 0.08 1.76 6.93 -52.49 -0.36 1.40 16 28 H 0.06 1.12 5.51 -51.93 -0.29 0.83 16 29 H 0.06 0.95 7.64 -51.93 -0.40 0.55 16 30 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.06 0.99 7.04 -51.93 -0.37 0.62 16 39 H 0.11 1.96 5.89 -52.49 -0.31 1.65 16 40 H 0.10 1.57 8.06 -52.49 -0.42 1.15 16 41 H 0.10 1.70 8.06 -52.48 -0.42 1.28 16 42 H 0.11 2.41 6.75 -52.48 -0.35 2.06 16 LS Contribution 326.53 15.07 4.92 4.92 Total: -1.00 -25.78 326.53 -11.52 -37.31 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -6.14 Total: 8.42 kcal Atomic # 6 Polarization: -38.99 SS G_CDS: -5.89 Total: -44.89 kcal Atomic # 7 Polarization: -18.91 SS G_CDS: 0.62 Total: -18.29 kcal Atomic # 14 Polarization: 17.55 SS G_CDS: -5.03 Total: 12.52 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -25.78 -11.52 -37.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038601502.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.263 kcal (2) G-P(sol) polarization free energy of solvation -25.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds