Wall clock time and date at job start Tue Mar 31 2020 02:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30736 * 1 3 3 Si 1.86802 * 119.99806 * 2 1 4 4 H 1.48493 * 109.47112 * 240.00344 * 3 2 1 5 5 H 1.48500 * 109.47175 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46885 * 120.00245 * 3 2 1 7 7 C 1.40149 * 119.99996 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99571 * 165.49473 * 7 2 1 9 9 C 1.40450 * 120.00313 * 345.50178 * 7 2 1 10 10 C 1.40532 * 120.71430 * 329.70990 * 9 7 2 11 11 C 1.38146 * 120.42517 * 180.02562 * 10 9 7 12 12 C 1.37670 * 121.79530 * 359.97438 * 11 10 9 13 13 C 1.50700 * 119.60620 * 180.02562 * 12 11 10 14 14 C 1.53004 * 109.47231 * 294.74964 * 13 12 11 15 15 C 1.52999 * 109.47382 * 179.97438 * 14 13 12 16 16 C 1.52993 * 109.46976 * 299.99703 * 15 14 13 17 17 C 1.53004 * 109.47467 * 60.00032 * 16 15 14 18 18 C 1.53001 * 109.46993 * 54.74052 * 13 12 11 19 19 C 1.40643 * 120.79643 * 0.27917 * 12 11 10 20 20 C 1.40517 * 121.16877 * 180.27684 * 19 12 11 21 21 C 1.36332 * 119.77215 * 179.73381 * 20 19 12 22 22 C 1.39078 * 120.93125 * 359.72659 * 21 20 19 23 23 C 1.37685 * 120.71448 * 0.02562 * 22 21 20 24 24 C 1.39531 * 119.56240 * 359.97438 * 23 22 21 25 25 H 0.97000 * 120.00076 * 359.97438 * 1 2 3 26 26 H 1.08000 * 119.78663 * 0.02562 * 10 9 7 27 27 H 1.08001 * 119.10565 * 179.97438 * 11 10 9 28 28 H 1.08997 * 109.47558 * 174.74540 * 13 12 11 29 29 H 1.08997 * 109.47196 * 59.99354 * 14 13 12 30 30 H 1.09002 * 109.46698 * 299.99796 * 14 13 12 31 31 H 1.09005 * 109.46656 * 59.99672 * 15 14 13 32 32 H 1.08997 * 109.46957 * 179.97438 * 15 14 13 33 33 H 1.09000 * 109.47130 * 180.02562 * 16 15 14 34 34 H 1.08997 * 109.47120 * 300.00048 * 16 15 14 35 35 H 1.09006 * 109.46883 * 59.99788 * 17 16 15 36 36 H 1.08991 * 109.47447 * 180.02562 * 17 16 15 37 37 H 1.09005 * 109.46298 * 60.00651 * 18 13 12 38 38 H 1.08997 * 109.47366 * 300.00605 * 18 13 12 39 39 H 1.07998 * 120.10875 * 359.44094 * 20 19 12 40 40 H 1.07996 * 119.53277 * 179.70702 * 21 20 19 41 41 H 1.08004 * 119.64224 * 180.02562 * 22 21 20 42 42 H 1.08004 * 120.21593 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 3.0950 1.6965 -1.2125 5 1 1.2763 2.7465 0.0006 6 1 3.0951 1.6964 1.2125 7 6 2.0081 -1.2137 -0.0005 8 1 3.0623 -1.2285 -0.2348 9 6 1.3395 -2.4109 0.3034 10 6 0.2407 -2.4168 1.1796 11 6 -0.4122 -3.5979 1.4748 12 6 -0.0193 -4.7997 0.9303 13 6 -0.7676 -6.0584 1.2860 14 6 -0.5812 -6.3592 2.7746 15 6 -1.3415 -7.6368 3.1360 16 6 -2.8297 -7.4465 2.8367 17 6 -3.0163 -7.1458 1.3482 18 6 -2.2560 -5.8687 0.9868 19 6 1.0755 -4.8677 0.0500 20 6 1.4797 -6.0892 -0.5149 21 6 2.5416 -6.1216 -1.3692 22 6 3.2312 -4.9590 -1.6967 23 6 2.8570 -3.7457 -1.1642 24 6 1.7736 -3.6836 -0.2871 25 1 -0.4850 0.8400 0.0004 26 1 -0.0953 -1.4921 1.6250 27 1 -1.2539 -3.5779 2.1513 28 1 -0.3815 -6.8898 0.6963 29 1 -0.9673 -5.5279 3.3644 30 1 0.4792 -6.4943 2.9879 31 1 -0.9556 -8.4683 2.5461 32 1 -1.2082 -7.8512 4.1963 33 1 -3.3715 -8.3565 3.0946 34 1 -3.2155 -6.6150 3.4265 35 1 -2.6305 -7.9773 0.7584 36 1 -4.0765 -7.0097 1.1351 37 1 -2.3889 -5.6545 -0.0737 38 1 -2.6422 -5.0374 1.5765 39 1 0.9538 -7.0000 -0.2694 40 1 2.8519 -7.0632 -1.7973 41 1 4.0694 -5.0086 -2.3761 42 1 3.3985 -2.8480 -1.4238 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000038601502.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:15:41 Heat of formation + Delta-G solvation = -11.705897 kcal Electronic energy + Delta-G solvation = -21574.889019 eV Core-core repulsion = 18674.874945 eV Total energy + Delta-G solvation = -2900.014074 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.152 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.87224 -39.08528 -37.01840 -35.55269 -33.52502 -31.53622 -31.09184 -30.71495 -29.74762 -26.70047 -23.97639 -23.40246 -23.34617 -23.21731 -21.34265 -20.34474 -18.93753 -17.71969 -17.66089 -16.68632 -16.53778 -15.76427 -15.12816 -15.02069 -14.97728 -14.67611 -14.48583 -14.15886 -13.89029 -13.74463 -13.41597 -13.25310 -13.09142 -12.96692 -12.90799 -12.55015 -12.45967 -12.17822 -11.93999 -11.85736 -11.61236 -11.42355 -11.34050 -11.16836 -10.90086 -10.79626 -10.65888 -10.10399 -9.11294 -8.77934 -8.43813 -6.27002 0.13854 0.66443 1.28075 1.35631 1.47451 1.66710 2.14311 2.45997 2.93910 3.75898 3.84605 3.97224 4.06934 4.22267 4.30771 4.33631 4.45765 4.50638 4.57387 4.60173 4.71938 4.73993 4.79966 4.81383 4.86652 4.92777 5.01895 5.05603 5.13257 5.22079 5.25033 5.32060 5.33933 5.39704 5.44361 5.53843 5.60387 5.63774 5.70210 5.77418 5.83578 5.91430 6.08371 6.20991 6.36478 6.47477 6.68730 6.81127 6.97871 8.21555 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.018047 B = 0.005449 C = 0.004456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.117943 B = 5136.922668 C = 6282.577348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.033 3.967 3 Si 0.986 3.014 4 H -0.255 1.255 5 H -0.266 1.266 6 H -0.259 1.259 7 C -0.470 4.470 8 H 0.085 0.915 9 C 0.097 3.903 10 C -0.248 4.248 11 C -0.057 4.057 12 C -0.222 4.222 13 C -0.018 4.018 14 C -0.105 4.105 15 C -0.113 4.113 16 C -0.116 4.116 17 C -0.113 4.113 18 C -0.107 4.107 19 C -0.020 4.020 20 C -0.154 4.154 21 C -0.112 4.112 22 C -0.178 4.178 23 C -0.090 4.090 24 C -0.144 4.144 25 H 0.292 0.708 26 H 0.090 0.910 27 H 0.095 0.905 28 H 0.072 0.928 29 H 0.046 0.954 30 H 0.047 0.953 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.054 0.946 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.042 0.958 38 H 0.046 0.954 39 H 0.134 0.866 40 H 0.143 0.857 41 H 0.136 0.864 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.674 -10.163 1.955 10.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.184 4.184 3 Si 0.806 3.194 4 H -0.179 1.179 5 H -0.190 1.190 6 H -0.183 1.183 7 C -0.497 4.497 8 H 0.103 0.897 9 C 0.094 3.906 10 C -0.268 4.268 11 C -0.075 4.075 12 C -0.223 4.223 13 C -0.036 4.036 14 C -0.143 4.143 15 C -0.151 4.151 16 C -0.153 4.153 17 C -0.151 4.151 18 C -0.145 4.145 19 C -0.020 4.020 20 C -0.172 4.172 21 C -0.130 4.130 22 C -0.197 4.197 23 C -0.108 4.108 24 C -0.144 4.144 25 H 0.103 0.897 26 H 0.108 0.892 27 H 0.113 0.887 28 H 0.091 0.909 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.073 0.927 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.061 0.939 38 H 0.065 0.935 39 H 0.152 0.848 40 H 0.161 0.839 41 H 0.154 0.846 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -1.901 -10.003 1.940 10.365 hybrid contribution 0.182 1.454 -0.022 1.465 sum -1.719 -8.549 1.918 8.929 Atomic orbital electron populations 1.69846 1.09297 1.31124 1.33086 1.26896 0.95525 1.04705 0.91250 0.85190 0.78789 0.75123 0.80342 1.17921 1.19041 1.18288 1.19743 0.97431 0.91734 1.40833 0.89731 1.18935 0.91893 0.91305 0.88485 1.20864 1.03698 0.96621 1.05595 1.20465 0.97128 0.92513 0.97440 1.19377 1.01152 0.95034 1.06707 1.19789 0.93851 0.93936 0.96066 1.21552 0.99447 0.97952 0.95334 1.21530 0.95345 0.96825 1.01361 1.21522 0.96200 1.01755 0.95822 1.21522 0.99800 0.96863 0.96883 1.21564 0.94895 0.98157 0.99887 1.18025 0.94966 0.92796 0.96171 1.21154 0.99376 0.96655 1.00031 1.20972 0.95578 0.98597 0.97819 1.21136 1.02579 0.92217 1.03719 1.21209 0.95438 0.98149 0.96037 1.19583 0.99592 0.93884 1.01376 0.89728 0.89230 0.88694 0.90944 0.93537 0.93451 0.91424 0.91251 0.90349 0.92706 0.91445 0.91444 0.93924 0.93505 0.84824 0.83914 0.84650 0.86955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -42.38 11.17 21.86 0.24 -42.14 16 2 C 0.03 1.67 5.17 85.32 0.44 2.11 16 3 Si 0.99 37.38 29.59 68.60 2.03 39.41 16 4 H -0.26 -9.28 7.11 99.48 0.71 -8.57 16 5 H -0.27 -9.55 7.11 99.48 0.71 -8.85 16 6 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 7 C -0.47 -25.03 8.38 23.27 0.20 -24.83 16 8 H 0.08 4.28 6.90 -2.91 -0.02 4.26 16 9 C 0.10 5.32 5.67 -19.92 -0.11 5.20 16 10 C -0.25 -13.48 8.66 22.81 0.20 -13.29 16 11 C -0.06 -2.75 8.62 22.11 0.19 -2.56 16 12 C -0.22 -9.74 4.85 -19.41 -0.09 -9.83 16 13 C -0.02 -0.62 2.21 -11.54 -0.03 -0.65 16 14 C -0.11 -3.20 5.06 30.60 0.15 -3.04 16 15 C -0.11 -2.58 5.92 30.59 0.18 -2.40 16 16 C -0.12 -2.45 5.92 30.59 0.18 -2.27 16 17 C -0.11 -2.66 5.92 30.58 0.18 -2.48 16 18 C -0.11 -3.38 4.95 30.58 0.15 -3.23 16 19 C -0.02 -0.90 5.74 -21.32 -0.12 -1.02 16 20 C -0.15 -5.90 9.35 22.38 0.21 -5.69 16 21 C -0.11 -3.85 9.95 22.03 0.22 -3.63 16 22 C -0.18 -6.59 10.02 22.34 0.22 -6.36 16 23 C -0.09 -4.04 9.46 22.45 0.21 -3.82 16 24 C -0.14 -7.29 5.90 -19.89 -0.12 -7.41 16 25 H 0.29 13.77 8.29 -92.71 -0.77 13.00 16 26 H 0.09 5.10 6.48 -2.91 -0.02 5.08 16 27 H 0.09 4.20 6.93 -2.91 -0.02 4.18 16 28 H 0.07 2.34 5.51 -2.39 -0.01 2.33 16 29 H 0.05 1.51 7.64 -2.39 -0.02 1.49 16 30 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 32 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 36 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 38 H 0.05 1.57 7.04 -2.39 -0.02 1.55 16 39 H 0.13 4.36 5.89 -2.91 -0.02 4.34 16 40 H 0.14 3.71 8.06 -2.91 -0.02 3.69 16 41 H 0.14 4.03 8.06 -2.91 -0.02 4.01 16 42 H 0.11 4.92 6.75 -2.91 -0.02 4.90 16 Total: -1.00 -59.90 326.53 5.55 -54.36 By element: Atomic # 1 Polarization: 32.55 SS G_CDS: 1.01 Total: 33.56 kcal Atomic # 6 Polarization: -87.46 SS G_CDS: 2.27 Total: -85.19 kcal Atomic # 7 Polarization: -42.38 SS G_CDS: 0.24 Total: -42.14 kcal Atomic # 14 Polarization: 37.38 SS G_CDS: 2.03 Total: 39.41 kcal Total: -59.90 5.55 -54.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038601502.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.651 kcal (2) G-P(sol) polarization free energy of solvation -59.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds