Wall clock time and date at job start Tue Mar 31 2020 02:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86797 * 119.99921 * 2 1 4 4 H 1.48503 * 109.47191 * 0.02562 * 3 2 1 5 5 H 1.48499 * 109.47172 * 120.00124 * 3 2 1 6 6 H 1.48496 * 109.47259 * 240.00143 * 3 2 1 7 7 C 1.38942 * 119.99922 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99706 * 203.03056 * 7 2 1 9 9 N 1.37091 * 120.00442 * 23.03069 * 7 2 1 10 10 C 1.34781 * 120.00258 * 43.14424 * 9 7 2 11 11 O 1.21296 * 119.99402 * 0.02562 * 10 9 7 12 12 C 1.50704 * 120.00220 * 180.02562 * 10 9 7 13 13 C 1.52998 * 109.46926 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.47097 * 179.97438 * 13 12 10 15 15 N 1.46499 * 109.46931 * 179.97438 * 14 13 12 16 16 C 1.34781 * 119.99916 * 180.02562 * 15 14 13 17 17 O 1.21284 * 119.99577 * 359.97438 * 16 15 14 18 18 C 1.50697 * 120.00032 * 180.02562 * 16 15 14 19 19 C 1.53006 * 117.49429 * 248.61667 * 18 16 15 20 20 C 1.53008 * 117.49515 * 179.97438 * 18 16 15 21 21 C 1.46508 * 120.00358 * 223.14930 * 9 7 2 22 22 C 1.53002 * 117.49453 * 8.25806 * 21 9 7 23 23 C 1.53004 * 60.00148 * 252.51359 * 22 21 9 24 24 H 0.96999 * 120.00137 * 186.13805 * 1 2 3 25 25 H 1.08997 * 109.46517 * 299.99567 * 12 10 9 26 26 H 1.08991 * 109.47105 * 59.99758 * 12 10 9 27 27 H 1.08997 * 109.47041 * 300.00062 * 13 12 10 28 28 H 1.09006 * 109.47275 * 59.99392 * 13 12 10 29 29 H 1.08997 * 109.47527 * 300.00134 * 14 13 12 30 30 H 1.09001 * 109.47054 * 60.00202 * 14 13 12 31 31 H 0.96993 * 120.00269 * 0.02562 * 15 14 13 32 32 H 1.08990 * 115.55536 * 34.32644 * 18 16 15 33 33 H 1.09000 * 117.49994 * 0.02562 * 19 18 16 34 34 H 1.08999 * 117.49669 * 145.02626 * 19 18 16 35 35 H 1.09000 * 117.49613 * 214.97378 * 20 18 16 36 36 H 1.09000 * 117.49819 * 359.97438 * 20 18 16 37 37 H 1.08999 * 115.55190 * 153.96769 * 21 9 7 38 38 H 1.08996 * 117.49764 * 0.02562 * 22 21 9 39 39 H 1.08999 * 117.49659 * 145.02224 * 22 21 9 40 40 H 1.08998 * 117.50051 * 252.51877 * 23 22 21 41 41 H 1.09000 * 117.51908 * 107.48332 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 1.2831 2.7465 0.0006 5 1 3.1019 1.6964 1.2125 6 1 3.1018 1.6964 -1.2125 7 6 2.0088 -1.2033 -0.0005 8 1 3.0243 -1.2407 0.3654 9 7 1.4054 -2.3431 -0.4655 10 6 0.6710 -2.3041 -1.5950 11 8 0.5445 -1.2606 -2.2003 12 6 0.0072 -3.5569 -2.1058 13 6 -0.7576 -3.2405 -3.3926 14 6 -1.4310 -4.5125 -3.9115 15 7 -2.1638 -4.2093 -5.1433 16 6 -2.8399 -5.1844 -5.7826 17 8 -2.8411 -6.3129 -5.3384 18 6 -3.5932 -4.8726 -7.0500 19 6 -5.1213 -4.9295 -6.9956 20 6 -4.3402 -6.0226 -7.7288 21 6 1.5587 -3.6035 0.2654 22 6 2.2373 -3.5476 1.6355 23 6 2.9767 -4.1511 0.4396 24 1 -0.4850 -0.8352 0.0898 25 1 0.7658 -4.3122 -2.3109 26 1 -0.6862 -3.9332 -1.3538 27 1 -1.5161 -2.4849 -3.1879 28 1 -0.0638 -2.8643 -4.1445 29 1 -0.6723 -5.2677 -4.1163 30 1 -2.1248 -4.8889 -3.1598 31 1 -2.1626 -3.3068 -5.4988 32 1 -3.1399 -4.1183 -7.6929 33 1 -5.5816 -5.1919 -6.0430 34 1 -5.6735 -4.2122 -7.6028 35 1 -4.3788 -6.0241 -8.8181 36 1 -4.2863 -7.0046 -7.2588 37 1 0.7532 -4.3256 0.1314 38 1 2.5693 -2.5730 1.9932 39 1 1.8783 -4.2329 2.4033 40 1 3.1040 -5.2335 0.4206 41 1 3.7955 -3.5738 0.0102 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067686397.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:58 Heat of formation + Delta-G solvation = -23.383218 kcal Electronic energy + Delta-G solvation = -21571.300121 eV Core-core repulsion = 18259.930417 eV Total energy + Delta-G solvation = -3311.369704 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.99908 -38.90281 -36.71692 -36.26768 -35.25875 -33.15665 -32.19302 -30.73243 -27.39622 -24.88932 -23.60250 -22.68469 -21.84781 -21.62127 -21.23579 -20.15901 -19.07278 -17.53029 -16.83758 -16.51191 -15.84245 -15.70582 -15.21488 -14.74209 -14.48200 -14.20089 -13.91301 -13.69232 -13.37356 -12.96469 -12.71227 -12.33120 -11.90206 -11.82600 -11.71691 -11.23203 -10.99294 -10.95264 -10.88171 -10.76226 -10.73626 -10.49306 -10.25326 -10.10249 -9.94386 -9.86094 -9.72709 -9.09230 -8.68654 -8.11056 -7.34864 -6.38810 -3.90392 2.39827 3.06154 3.40496 3.50665 3.63325 3.65282 3.90173 4.30486 4.48240 4.57427 4.62965 4.64045 4.72508 4.90845 5.08288 5.24437 5.32428 5.35100 5.42080 5.48861 5.49020 5.64956 5.67796 5.68792 5.80173 5.83718 5.86090 5.94849 6.05266 6.14900 6.33595 6.42181 6.44167 6.57732 6.66220 6.86261 7.45556 7.86986 8.15871 8.38153 8.79205 9.16819 9.54811 10.07517 10.89152 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.022566 B = 0.003455 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.525563 B = 8101.526376 C = 9059.722041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.040 3.960 3 Si 1.075 2.925 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.286 1.286 7 C -0.430 4.430 8 H 0.069 0.931 9 N -0.432 5.432 10 C 0.460 3.540 11 O -0.539 6.539 12 C -0.129 4.129 13 C -0.110 4.110 14 C 0.118 3.882 15 N -0.722 5.722 16 C 0.540 3.460 17 O -0.546 6.546 18 C -0.195 4.195 19 C -0.153 4.153 20 C -0.149 4.149 21 C 0.067 3.933 22 C -0.175 4.175 23 C -0.202 4.202 24 H 0.269 0.731 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.404 0.596 32 H 0.124 0.876 33 H 0.099 0.901 34 H 0.104 0.896 35 H 0.102 0.898 36 H 0.107 0.893 37 H 0.105 0.895 38 H 0.108 0.892 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.203 -9.426 -9.174 14.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.173 4.173 3 Si 0.902 3.098 4 H -0.207 1.207 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.556 4.556 8 H 0.087 0.913 9 N -0.153 5.153 10 C 0.248 3.752 11 O -0.418 6.418 12 C -0.170 4.170 13 C -0.149 4.149 14 C -0.005 4.005 15 N -0.373 5.373 16 C 0.326 3.674 17 O -0.424 6.424 18 C -0.217 4.217 19 C -0.191 4.191 20 C -0.186 4.186 21 C -0.039 4.039 22 C -0.212 4.212 23 C -0.241 4.241 24 H 0.080 0.920 25 H 0.097 0.903 26 H 0.094 0.906 27 H 0.094 0.906 28 H 0.092 0.908 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.238 0.762 32 H 0.142 0.858 33 H 0.118 0.882 34 H 0.122 0.878 35 H 0.120 0.880 36 H 0.126 0.874 37 H 0.122 0.878 38 H 0.126 0.874 39 H 0.102 0.898 40 H 0.103 0.897 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.476 -8.044 -9.226 13.409 hybrid contribution 0.350 -1.375 0.076 1.420 sum -5.126 -9.418 -9.150 14.096 Atomic orbital electron populations 1.70566 1.07478 1.30933 1.38564 1.26148 0.95977 1.02172 0.92960 0.83440 0.74972 0.75016 0.76364 1.20699 1.21602 1.21199 1.19750 0.98561 0.86954 1.50375 0.91287 1.43018 1.46887 1.06259 1.19164 1.20075 0.84000 0.89605 0.81510 1.90606 1.61923 1.32011 1.57280 1.21484 0.99750 0.98541 0.97259 1.21459 1.00062 0.95897 0.97446 1.21472 0.95397 0.98221 0.85395 1.45982 1.51793 1.12571 1.26967 1.19664 0.78667 0.84693 0.84382 1.90686 1.62608 1.21560 1.67562 1.22216 0.95741 1.05161 0.98536 1.22947 0.90746 1.02176 1.03182 1.22952 1.01356 0.94778 0.99543 1.21794 0.94254 0.90822 0.97019 1.23088 1.04358 1.02858 0.90938 1.23251 0.97534 0.99219 1.04096 0.92009 0.90342 0.90605 0.90604 0.90782 0.91539 0.91581 0.76202 0.85808 0.88232 0.87753 0.87970 0.87441 0.87766 0.87414 0.89765 0.89714 0.89030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -25.43 12.33 55.50 0.68 -24.75 16 2 C 0.04 1.14 4.22 -17.47 -0.07 1.07 16 3 Si 1.07 25.51 29.98 -169.99 -5.10 20.41 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.35 7.11 56.52 0.40 -5.94 16 6 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.43 -11.75 7.74 -14.94 -0.12 -11.87 16 8 H 0.07 1.86 7.47 -52.48 -0.39 1.47 16 9 N -0.43 -10.62 2.61 -107.72 -0.28 -10.90 16 10 C 0.46 11.18 6.43 -10.98 -0.07 11.11 16 11 O -0.54 -15.34 13.81 5.54 0.08 -15.26 16 12 C -0.13 -2.31 4.26 -27.88 -0.12 -2.42 16 13 C -0.11 -1.76 4.62 -26.73 -0.12 -1.88 16 14 C 0.12 1.62 5.67 -4.04 -0.02 1.60 16 15 N -0.72 -8.88 5.56 -60.30 -0.33 -9.21 16 16 C 0.54 7.09 7.61 -10.99 -0.08 7.01 16 17 O -0.55 -9.19 16.26 5.55 0.09 -9.10 16 18 C -0.20 -1.85 6.19 -91.77 -0.57 -2.42 16 19 C -0.15 -1.25 10.24 -26.70 -0.27 -1.52 16 20 C -0.15 -1.28 10.05 -26.70 -0.27 -1.55 16 21 C 0.07 1.32 5.99 -67.92 -0.41 0.91 16 22 C -0.17 -3.16 9.81 -26.73 -0.26 -3.42 16 23 C -0.20 -3.47 10.28 -26.73 -0.27 -3.74 16 24 H 0.27 8.18 7.41 -40.82 -0.30 7.88 16 25 H 0.08 1.26 8.11 -51.93 -0.42 0.83 16 26 H 0.08 1.25 7.57 -51.93 -0.39 0.86 16 27 H 0.08 1.32 8.10 -51.93 -0.42 0.90 16 28 H 0.07 1.22 8.10 -51.93 -0.42 0.80 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.40 4.12 8.47 -40.82 -0.35 3.78 16 32 H 0.12 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.11 1.09 7.67 -51.93 -0.40 0.69 16 37 H 0.10 1.79 6.81 -51.93 -0.35 1.43 16 38 H 0.11 2.20 6.85 -51.93 -0.36 1.84 16 39 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 40 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.09 1.71 8.14 -51.93 -0.42 1.29 16 LS Contribution 344.79 15.07 5.20 5.20 Total: -1.00 -34.78 344.79 -8.73 -43.51 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -6.40 Total: 7.24 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: -2.66 Total: -7.13 kcal Atomic # 7 Polarization: -44.93 SS G_CDS: 0.07 Total: -44.86 kcal Atomic # 8 Polarization: -24.53 SS G_CDS: 0.17 Total: -24.36 kcal Atomic # 14 Polarization: 25.51 SS G_CDS: -5.10 Total: 20.41 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -34.78 -8.73 -43.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067686397.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.124 kcal (2) G-P(sol) polarization free energy of solvation -34.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds