Wall clock time and date at job start Tue Mar 31 2020 02:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86797 * 119.99921 * 2 1 4 4 H 1.48503 * 109.47191 * 0.02562 * 3 2 1 5 5 H 1.48499 * 109.47172 * 120.00124 * 3 2 1 6 6 H 1.48496 * 109.47259 * 240.00143 * 3 2 1 7 7 C 1.38942 * 119.99922 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99706 * 203.03056 * 7 2 1 9 9 N 1.37091 * 120.00442 * 23.03069 * 7 2 1 10 10 C 1.34781 * 120.00258 * 43.14424 * 9 7 2 11 11 O 1.21296 * 119.99402 * 0.02562 * 10 9 7 12 12 C 1.50704 * 120.00220 * 180.02562 * 10 9 7 13 13 C 1.52998 * 109.46926 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.47097 * 179.97438 * 13 12 10 15 15 N 1.46499 * 109.46931 * 179.97438 * 14 13 12 16 16 C 1.34781 * 119.99916 * 180.02562 * 15 14 13 17 17 O 1.21284 * 119.99577 * 359.97438 * 16 15 14 18 18 C 1.50697 * 120.00032 * 180.02562 * 16 15 14 19 19 C 1.53006 * 117.49429 * 248.61667 * 18 16 15 20 20 C 1.53008 * 117.49515 * 179.97438 * 18 16 15 21 21 C 1.46508 * 120.00358 * 223.14930 * 9 7 2 22 22 C 1.53002 * 117.49453 * 8.25806 * 21 9 7 23 23 C 1.53004 * 60.00148 * 252.51359 * 22 21 9 24 24 H 0.96999 * 120.00137 * 186.13805 * 1 2 3 25 25 H 1.08997 * 109.46517 * 299.99567 * 12 10 9 26 26 H 1.08991 * 109.47105 * 59.99758 * 12 10 9 27 27 H 1.08997 * 109.47041 * 300.00062 * 13 12 10 28 28 H 1.09006 * 109.47275 * 59.99392 * 13 12 10 29 29 H 1.08997 * 109.47527 * 300.00134 * 14 13 12 30 30 H 1.09001 * 109.47054 * 60.00202 * 14 13 12 31 31 H 0.96993 * 120.00269 * 0.02562 * 15 14 13 32 32 H 1.08990 * 115.55536 * 34.32644 * 18 16 15 33 33 H 1.09000 * 117.49994 * 0.02562 * 19 18 16 34 34 H 1.08999 * 117.49669 * 145.02626 * 19 18 16 35 35 H 1.09000 * 117.49613 * 214.97378 * 20 18 16 36 36 H 1.09000 * 117.49819 * 359.97438 * 20 18 16 37 37 H 1.08999 * 115.55190 * 153.96769 * 21 9 7 38 38 H 1.08996 * 117.49764 * 0.02562 * 22 21 9 39 39 H 1.08999 * 117.49659 * 145.02224 * 22 21 9 40 40 H 1.08998 * 117.50051 * 252.51877 * 23 22 21 41 41 H 1.09000 * 117.51908 * 107.48332 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 1.2831 2.7465 0.0006 5 1 3.1019 1.6964 1.2125 6 1 3.1018 1.6964 -1.2125 7 6 2.0088 -1.2033 -0.0005 8 1 3.0243 -1.2407 0.3654 9 7 1.4054 -2.3431 -0.4655 10 6 0.6710 -2.3041 -1.5950 11 8 0.5445 -1.2606 -2.2003 12 6 0.0072 -3.5569 -2.1058 13 6 -0.7576 -3.2405 -3.3926 14 6 -1.4310 -4.5125 -3.9115 15 7 -2.1638 -4.2093 -5.1433 16 6 -2.8399 -5.1844 -5.7826 17 8 -2.8411 -6.3129 -5.3384 18 6 -3.5932 -4.8726 -7.0500 19 6 -5.1213 -4.9295 -6.9956 20 6 -4.3402 -6.0226 -7.7288 21 6 1.5587 -3.6035 0.2654 22 6 2.2373 -3.5476 1.6355 23 6 2.9767 -4.1511 0.4396 24 1 -0.4850 -0.8352 0.0898 25 1 0.7658 -4.3122 -2.3109 26 1 -0.6862 -3.9332 -1.3538 27 1 -1.5161 -2.4849 -3.1879 28 1 -0.0638 -2.8643 -4.1445 29 1 -0.6723 -5.2677 -4.1163 30 1 -2.1248 -4.8889 -3.1598 31 1 -2.1626 -3.3068 -5.4988 32 1 -3.1399 -4.1183 -7.6929 33 1 -5.5816 -5.1919 -6.0430 34 1 -5.6735 -4.2122 -7.6028 35 1 -4.3788 -6.0241 -8.8181 36 1 -4.2863 -7.0046 -7.2588 37 1 0.7532 -4.3256 0.1314 38 1 2.5693 -2.5730 1.9932 39 1 1.8783 -4.2329 2.4033 40 1 3.1040 -5.2335 0.4206 41 1 3.7955 -3.5738 0.0102 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067686397.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:58 Heat of formation + Delta-G solvation = -46.449807 kcal Electronic energy + Delta-G solvation = -21572.300363 eV Core-core repulsion = 18259.930417 eV Total energy + Delta-G solvation = -3312.369946 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.03356 -40.66742 -38.08286 -37.38448 -36.45039 -35.02007 -33.66241 -32.59930 -28.80425 -26.55726 -24.85344 -23.33705 -23.25856 -23.00519 -22.74555 -21.36065 -20.67807 -18.68635 -18.44424 -18.10816 -17.07618 -16.92581 -16.57120 -16.17244 -15.86283 -15.54534 -15.39956 -15.20678 -14.84555 -14.56585 -13.95847 -13.55607 -13.47107 -13.10600 -12.96451 -12.66597 -12.44599 -12.41925 -12.31932 -11.99268 -11.93519 -11.86325 -11.75648 -11.55745 -11.46125 -11.32571 -10.98149 -10.68238 -10.16950 -10.05158 -9.31494 -8.54033 -6.05186 1.43659 1.48487 1.59627 1.76590 2.08036 2.11371 2.47315 2.91055 2.95664 3.07299 3.33137 3.67125 3.75539 3.85203 3.95690 3.98351 4.02338 4.09220 4.16817 4.21574 4.26196 4.40719 4.53573 4.62008 4.65928 4.73235 4.81387 4.90859 4.97376 5.02035 5.09505 5.18699 5.21289 5.22327 5.38532 5.39793 5.74219 6.18995 6.48372 6.84637 7.16499 7.17284 7.54072 8.14837 8.70990 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.022566 B = 0.003455 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.525563 B = 8101.526376 C = 9059.722041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C -0.008 4.008 3 Si 1.114 2.886 4 H -0.286 1.286 5 H -0.259 1.259 6 H -0.286 1.286 7 C -0.435 4.435 8 H 0.064 0.936 9 N -0.451 5.451 10 C 0.446 3.554 11 O -0.592 6.592 12 C -0.117 4.117 13 C -0.096 4.096 14 C 0.130 3.870 15 N -0.718 5.718 16 C 0.534 3.466 17 O -0.589 6.589 18 C -0.204 4.204 19 C -0.144 4.144 20 C -0.149 4.149 21 C 0.040 3.960 22 C -0.174 4.174 23 C -0.177 4.177 24 H 0.254 0.746 25 H 0.104 0.896 26 H 0.094 0.906 27 H 0.056 0.944 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.414 0.586 32 H 0.150 0.850 33 H 0.086 0.914 34 H 0.132 0.868 35 H 0.129 0.871 36 H 0.086 0.914 37 H 0.134 0.866 38 H 0.077 0.923 39 H 0.119 0.881 40 H 0.127 0.873 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.055 -10.814 -9.834 15.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.215 4.215 3 Si 0.936 3.064 4 H -0.212 1.212 5 H -0.184 1.184 6 H -0.212 1.212 7 C -0.562 4.562 8 H 0.082 0.918 9 N -0.171 5.171 10 C 0.237 3.763 11 O -0.475 6.475 12 C -0.158 4.158 13 C -0.134 4.134 14 C 0.006 3.994 15 N -0.369 5.369 16 C 0.323 3.677 17 O -0.470 6.470 18 C -0.224 4.224 19 C -0.181 4.181 20 C -0.186 4.186 21 C -0.065 4.065 22 C -0.211 4.211 23 C -0.216 4.216 24 H 0.064 0.936 25 H 0.123 0.877 26 H 0.112 0.888 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.250 0.750 32 H 0.168 0.832 33 H 0.104 0.896 34 H 0.150 0.850 35 H 0.147 0.853 36 H 0.104 0.896 37 H 0.152 0.848 38 H 0.095 0.905 39 H 0.137 0.863 40 H 0.145 0.855 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.301 -9.449 -9.859 14.649 hybrid contribution 0.365 -1.026 0.293 1.127 sum -4.937 -10.475 -9.565 15.020 Atomic orbital electron populations 1.70687 1.08395 1.29896 1.41974 1.27399 0.96112 1.05508 0.92446 0.82957 0.74271 0.71696 0.77475 1.21206 1.18399 1.21237 1.19881 0.98477 0.88386 1.49409 0.91782 1.43268 1.46685 1.07286 1.19898 1.21146 0.83277 0.90947 0.80967 1.90562 1.63637 1.34465 1.58793 1.21424 1.00422 0.95752 0.98179 1.21267 0.99206 0.96422 0.96506 1.21236 0.95383 0.96734 0.85998 1.45948 1.51314 1.13188 1.26418 1.20319 0.78259 0.83976 0.85185 1.90662 1.64151 1.23226 1.68946 1.22293 0.96343 1.06570 0.97227 1.23053 0.89786 1.02345 1.02931 1.23029 1.01010 0.93639 1.00926 1.22144 0.96875 0.89490 0.97976 1.23121 1.04172 1.02380 0.91436 1.23270 0.94959 1.01203 1.02141 0.93648 0.87728 0.88808 0.92506 0.91605 0.91164 0.91772 0.74959 0.83206 0.89577 0.85015 0.85314 0.89554 0.84811 0.90489 0.86293 0.85528 0.91058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -54.45 12.33 21.66 0.27 -54.18 16 2 C -0.01 -0.49 4.22 84.92 0.36 -0.13 16 3 Si 1.11 52.27 29.98 68.60 2.06 54.32 16 4 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 5 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 6 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 7 C -0.43 -24.14 7.74 84.04 0.65 -23.49 16 8 H 0.06 3.52 7.47 -2.91 -0.02 3.50 16 9 N -0.45 -22.19 2.61 -613.09 -1.60 -23.79 16 10 C 0.45 21.89 6.43 87.66 0.56 22.46 16 11 O -0.59 -34.68 13.81 -3.08 -0.04 -34.73 16 12 C -0.12 -4.04 4.26 29.85 0.13 -3.91 16 13 C -0.10 -3.00 4.62 30.59 0.14 -2.86 16 14 C 0.13 3.42 5.67 86.38 0.49 3.91 16 15 N -0.72 -16.90 5.56 -463.06 -2.57 -19.47 16 16 C 0.53 13.54 7.61 87.66 0.67 14.21 16 17 O -0.59 -19.67 16.26 -3.04 -0.05 -19.72 16 18 C -0.20 -3.46 6.19 -11.54 -0.07 -3.54 16 19 C -0.14 -2.04 10.24 30.61 0.31 -1.73 16 20 C -0.15 -2.29 10.05 30.61 0.31 -1.98 16 21 C 0.04 1.49 5.99 44.99 0.27 1.76 16 22 C -0.17 -5.93 9.81 30.60 0.30 -5.63 16 23 C -0.18 -5.59 10.28 30.60 0.31 -5.27 16 24 H 0.25 16.01 7.41 -92.71 -0.69 15.33 16 25 H 0.10 3.07 8.11 -2.39 -0.02 3.05 16 26 H 0.09 2.92 7.57 -2.39 -0.02 2.90 16 27 H 0.06 2.00 8.10 -2.39 -0.02 1.98 16 28 H 0.07 2.17 8.10 -2.38 -0.02 2.15 16 29 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.41 7.99 8.47 -92.71 -0.79 7.21 16 32 H 0.15 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.13 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.13 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.09 1.72 7.67 -2.39 -0.02 1.70 16 37 H 0.13 4.16 6.81 -2.39 -0.02 4.14 16 38 H 0.08 3.12 6.85 -2.39 -0.02 3.11 16 39 H 0.12 3.21 8.14 -2.39 -0.02 3.19 16 40 H 0.13 2.97 8.14 -2.39 -0.02 2.95 16 41 H 0.07 2.55 8.14 -2.39 -0.02 2.54 16 Total: -1.00 -79.20 344.79 2.82 -76.39 By element: Atomic # 1 Polarization: 27.04 SS G_CDS: 0.32 Total: 27.37 kcal Atomic # 6 Polarization: -10.63 SS G_CDS: 4.43 Total: -6.20 kcal Atomic # 7 Polarization: -93.53 SS G_CDS: -3.91 Total: -97.44 kcal Atomic # 8 Polarization: -54.35 SS G_CDS: -0.09 Total: -54.44 kcal Atomic # 14 Polarization: 52.27 SS G_CDS: 2.06 Total: 54.32 kcal Total: -79.20 2.82 -76.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067686397.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.940 kcal (2) G-P(sol) polarization free energy of solvation -79.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds