Wall clock time and date at job start Tue Mar 31 2020 02:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47137 * 141.51776 * 3 2 1 5 5 N 1.46506 * 109.46992 * 179.97438 * 4 3 2 6 6 C 1.46499 * 119.99936 * 90.00137 * 5 4 3 7 7 C 1.50703 * 109.47126 * 89.99796 * 6 5 4 8 8 H 1.08002 * 119.99820 * 359.97438 * 7 6 5 9 9 C 1.37876 * 119.99889 * 180.02562 * 7 6 5 10 10 N 1.31518 * 120.00192 * 359.97438 * 9 7 6 11 11 Si 1.86806 * 120.00045 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.46980 * 0.02562 * 11 9 7 13 13 H 1.48497 * 109.47015 * 119.99649 * 11 9 7 14 14 H 1.48496 * 109.47036 * 240.00093 * 11 9 7 15 15 C 1.34773 * 119.99969 * 269.72101 * 5 4 3 16 16 O 1.21283 * 120.00092 * 180.02562 * 15 5 4 17 17 C 1.50702 * 120.00430 * 0.02562 * 15 5 4 18 18 C 1.52991 * 109.47286 * 179.97438 * 17 15 5 19 19 O 1.42902 * 110.01780 * 64.30007 * 18 17 15 20 20 C 1.54267 * 110.03406 * 302.90647 * 18 17 15 21 21 C 1.54972 * 104.15867 * 217.13964 * 20 18 17 22 22 C 1.54891 * 102.77849 * 37.88376 * 21 20 18 23 23 C 1.53879 * 110.03300 * 185.68653 * 18 17 15 24 24 H 1.09000 * 109.47618 * 21.51350 * 3 2 1 25 25 H 1.09008 * 109.47236 * 261.51880 * 3 2 1 26 26 H 1.09000 * 109.46884 * 60.00227 * 4 3 2 27 27 H 1.09000 * 109.46955 * 299.99542 * 4 3 2 28 28 H 1.08994 * 109.47173 * 210.00167 * 6 5 4 29 29 H 1.09005 * 109.47077 * 330.00338 * 6 5 4 30 30 H 0.96995 * 119.99689 * 179.97438 * 10 9 7 31 31 H 1.09009 * 109.46564 * 299.99895 * 17 15 5 32 32 H 1.09001 * 109.47030 * 59.99569 * 17 15 5 33 33 H 0.96701 * 113.99730 * 300.69830 * 19 18 17 34 34 H 1.08997 * 110.48331 * 335.78410 * 20 18 17 35 35 H 1.08993 * 110.48515 * 98.42697 * 20 18 17 36 36 H 1.08998 * 110.71446 * 279.56994 * 21 20 18 37 37 H 1.09001 * 110.76032 * 156.22521 * 21 20 18 38 38 H 1.09001 * 110.48540 * 203.40322 * 22 21 20 39 39 H 1.08999 * 110.48185 * 80.76233 * 22 21 20 40 40 H 1.08997 * 110.03473 * 238.56936 * 23 18 17 41 41 H 1.09008 * 110.02877 * 0.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1175 1.1301 -0.8976 5 7 4.5825 1.1311 -0.8971 6 6 5.3159 0.3420 -1.8899 7 6 5.5669 1.1835 -3.1147 8 1 5.2149 2.2039 -3.1501 9 6 6.2449 0.6503 -4.1903 10 7 6.6731 -0.5924 -4.1473 11 14 6.5554 1.6932 -5.7088 12 1 5.9775 3.0461 -5.5067 13 1 8.0178 1.8095 -5.9388 14 1 5.9181 1.0532 -6.8875 15 6 5.2556 1.8624 0.0131 16 8 6.4684 1.8636 0.0133 17 6 4.5012 2.6787 1.0308 18 6 5.4947 3.4072 1.9381 19 8 6.2547 4.3472 1.1760 20 6 6.4370 2.3899 2.6142 21 6 6.6505 2.9600 4.0393 22 6 5.2538 3.5278 4.3940 23 6 4.7429 4.1307 3.0691 24 1 2.9718 -0.9552 -0.3769 25 1 2.9713 0.1524 1.0165 26 1 2.7537 2.0859 -0.5206 27 1 2.7543 0.9783 -1.9140 28 1 6.2683 0.0215 -1.4678 29 1 4.7275 -0.5334 -2.1650 30 1 7.1497 -0.9675 -4.9042 31 1 3.8739 3.4083 0.5185 32 1 3.8751 2.0203 1.6329 33 1 6.7603 3.9505 0.4534 34 1 5.9665 1.4080 2.6628 35 1 7.3848 2.3337 2.0789 36 1 7.3986 3.7527 4.0294 37 1 6.9337 2.1688 4.7335 38 1 5.3390 4.3012 5.1573 39 1 4.5918 2.7298 4.7303 40 1 4.9586 5.1987 3.0373 41 1 3.6703 3.9625 2.9718 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073030639.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:20:14 Heat of formation + Delta-G solvation = -78.108946 kcal Electronic energy + Delta-G solvation = -22585.556730 eV Core-core repulsion = 19271.813941 eV Total energy + Delta-G solvation = -3313.742789 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.09801 -38.19212 -36.85146 -35.32215 -34.50918 -32.96955 -30.91150 -30.73513 -28.68842 -27.47756 -25.43994 -24.05428 -22.65892 -20.88796 -19.70571 -18.64435 -17.64399 -16.62875 -16.56508 -16.36233 -15.70656 -15.16491 -14.97278 -14.82560 -14.64931 -14.10200 -13.72156 -13.40138 -13.12556 -12.77811 -12.58860 -12.47032 -12.22618 -12.18650 -11.84035 -11.70549 -11.36845 -11.31563 -11.14337 -11.00746 -10.91920 -10.86808 -10.70279 -10.60158 -10.43601 -10.22382 -9.73064 -9.61403 -9.01685 -8.51423 -7.91426 -6.12957 -4.17733 2.69006 2.77686 3.20338 3.25829 3.34437 3.37989 3.59022 4.13090 4.36548 4.39356 4.62232 4.70879 4.91789 4.93838 5.07834 5.12373 5.16615 5.23211 5.32347 5.43257 5.53046 5.58512 5.65673 5.75943 5.78568 5.87248 5.88569 6.01228 6.08719 6.10777 6.19239 6.37847 6.54494 6.87470 7.29787 7.36843 7.53886 7.82986 8.03075 8.12667 8.20054 8.77237 8.92090 9.48339 10.95174 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.012905 B = 0.005801 C = 0.004406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.230800 B = 4825.197188 C = 6353.681387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C 0.217 3.783 3 C -0.050 4.050 4 C 0.116 3.884 5 N -0.595 5.595 6 C 0.244 3.756 7 C -0.528 4.528 8 H 0.058 0.942 9 C 0.063 3.937 10 N -0.893 5.893 11 Si 0.896 3.104 12 H -0.273 1.273 13 H -0.283 1.283 14 H -0.284 1.284 15 C 0.510 3.490 16 O -0.536 6.536 17 C -0.173 4.173 18 C 0.149 3.851 19 O -0.565 6.565 20 C -0.138 4.138 21 C -0.126 4.126 22 C -0.123 4.123 23 C -0.114 4.114 24 H 0.117 0.883 25 H 0.106 0.894 26 H 0.076 0.924 27 H 0.094 0.906 28 H 0.047 0.953 29 H 0.034 0.966 30 H 0.263 0.737 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.389 0.611 34 H 0.066 0.934 35 H 0.085 0.915 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.077 0.923 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.628 4.387 13.965 15.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.122 5.122 2 C -0.101 4.101 3 C -0.092 4.092 4 C -0.010 4.010 5 N -0.325 5.325 6 C 0.125 3.875 7 C -0.567 4.567 8 H 0.077 0.923 9 C -0.139 4.139 10 N -0.532 5.532 11 Si 0.724 3.276 12 H -0.198 1.198 13 H -0.209 1.209 14 H -0.210 1.210 15 C 0.297 3.703 16 O -0.414 6.414 17 C -0.213 4.213 18 C 0.108 3.892 19 O -0.375 6.375 20 C -0.175 4.175 21 C -0.163 4.163 22 C -0.161 4.161 23 C -0.152 4.152 24 H 0.135 0.865 25 H 0.124 0.876 26 H 0.094 0.906 27 H 0.112 0.888 28 H 0.065 0.935 29 H 0.052 0.948 30 H 0.073 0.927 31 H 0.113 0.887 32 H 0.112 0.888 33 H 0.241 0.759 34 H 0.085 0.915 35 H 0.104 0.896 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.095 0.905 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.833 4.642 14.239 16.072 hybrid contribution 0.711 -0.042 -1.446 1.612 sum -5.122 4.600 12.792 14.527 Atomic orbital electron populations 1.81213 1.13032 1.08912 1.09022 1.29091 0.95091 0.93021 0.92940 1.19889 0.81388 1.04128 1.03751 1.21321 0.82226 0.96592 1.00862 1.48231 1.04874 1.47229 1.32204 1.19367 0.92590 0.90191 0.85376 1.21438 1.36658 0.99024 0.99602 0.92330 1.24914 0.95273 0.95040 0.98708 1.69927 1.38252 1.13541 1.31495 0.86465 0.78123 0.80431 0.82553 1.19771 1.20862 1.20993 1.20358 0.88155 0.80027 0.81768 1.90621 1.13782 1.64225 1.72779 1.22649 1.00209 1.00268 0.98188 1.21453 0.89761 0.88234 0.89781 1.86364 1.64885 1.37221 1.49050 1.23022 1.01241 0.97939 0.95324 1.22529 0.96841 1.00083 0.96891 1.22351 0.97051 0.99949 0.96725 1.22171 0.99049 1.00997 0.92933 0.86497 0.87615 0.90553 0.88751 0.93487 0.94806 0.92704 0.88652 0.88786 0.75924 0.91542 0.89611 0.91467 0.91873 0.91737 0.91666 0.90469 0.91044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.41 18.54 42.15 0.78 -5.63 16 2 C 0.22 2.54 15.43 -20.76 -0.32 2.22 16 3 C -0.05 -0.50 6.03 -29.52 -0.18 -0.68 16 4 C 0.12 1.49 5.17 -4.04 -0.02 1.47 16 5 N -0.59 -10.33 2.46 -175.05 -0.43 -10.76 16 6 C 0.24 5.57 5.16 -5.19 -0.03 5.54 16 7 C -0.53 -13.77 9.38 -34.44 -0.32 -14.09 16 8 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 9 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 10 N -0.89 -25.10 13.29 55.43 0.74 -24.37 16 11 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 12 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 13 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 14 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 15 C 0.51 8.69 7.14 -10.99 -0.08 8.61 16 16 O -0.54 -11.05 12.09 -9.16 -0.11 -11.16 16 17 C -0.17 -2.18 3.18 -27.89 -0.09 -2.27 16 18 C 0.15 1.97 0.98 -89.50 -0.09 1.88 16 19 O -0.57 -8.99 12.89 -49.95 -0.64 -9.63 16 20 C -0.14 -1.82 4.65 -25.03 -0.12 -1.94 16 21 C -0.13 -1.37 6.91 -24.69 -0.17 -1.54 16 22 C -0.12 -1.17 6.83 -25.07 -0.17 -1.34 16 23 C -0.11 -1.23 6.27 -25.61 -0.16 -1.39 16 24 H 0.12 1.16 8.14 -51.93 -0.42 0.74 16 25 H 0.11 0.84 7.26 -51.92 -0.38 0.46 16 26 H 0.08 0.83 6.43 -51.93 -0.33 0.49 16 27 H 0.09 1.31 8.07 -51.93 -0.42 0.89 16 28 H 0.05 1.23 7.43 -51.93 -0.39 0.84 16 29 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 30 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 31 H 0.10 1.14 7.40 -51.92 -0.38 0.75 16 32 H 0.09 0.91 7.22 -51.93 -0.37 0.54 16 33 H 0.39 6.55 6.96 45.56 0.32 6.87 16 34 H 0.07 0.85 7.78 -51.93 -0.40 0.45 16 35 H 0.09 1.34 7.17 -51.93 -0.37 0.97 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.08 0.89 7.95 -51.93 -0.41 0.47 16 41 H 0.07 0.65 7.67 -51.92 -0.40 0.25 16 LS Contribution 338.96 15.07 5.11 5.11 Total: -1.00 -30.98 338.96 -7.04 -38.03 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -5.62 Total: 4.38 kcal Atomic # 6 Polarization: -0.07 SS G_CDS: -1.84 Total: -1.91 kcal Atomic # 7 Polarization: -41.85 SS G_CDS: 1.09 Total: -40.76 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: -0.75 Total: -20.79 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.98 -7.04 -38.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073030639.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.082 kcal (2) G-P(sol) polarization free energy of solvation -30.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds