Wall clock time and date at job start Tue Mar 31 2020 02:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47137 * 141.51776 * 3 2 1 5 5 N 1.46506 * 109.46992 * 179.97438 * 4 3 2 6 6 C 1.46499 * 119.99936 * 90.00137 * 5 4 3 7 7 C 1.50703 * 109.47126 * 89.99796 * 6 5 4 8 8 H 1.08002 * 119.99820 * 359.97438 * 7 6 5 9 9 C 1.37876 * 119.99889 * 180.02562 * 7 6 5 10 10 N 1.31518 * 120.00192 * 359.97438 * 9 7 6 11 11 Si 1.86806 * 120.00045 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.46980 * 0.02562 * 11 9 7 13 13 H 1.48497 * 109.47015 * 119.99649 * 11 9 7 14 14 H 1.48496 * 109.47036 * 240.00093 * 11 9 7 15 15 C 1.34773 * 119.99969 * 269.72101 * 5 4 3 16 16 O 1.21283 * 120.00092 * 180.02562 * 15 5 4 17 17 C 1.50702 * 120.00430 * 0.02562 * 15 5 4 18 18 C 1.52991 * 109.47286 * 179.97438 * 17 15 5 19 19 O 1.42902 * 110.01780 * 64.30007 * 18 17 15 20 20 C 1.54267 * 110.03406 * 302.90647 * 18 17 15 21 21 C 1.54972 * 104.15867 * 217.13964 * 20 18 17 22 22 C 1.54891 * 102.77849 * 37.88376 * 21 20 18 23 23 C 1.53879 * 110.03300 * 185.68653 * 18 17 15 24 24 H 1.09000 * 109.47618 * 21.51350 * 3 2 1 25 25 H 1.09008 * 109.47236 * 261.51880 * 3 2 1 26 26 H 1.09000 * 109.46884 * 60.00227 * 4 3 2 27 27 H 1.09000 * 109.46955 * 299.99542 * 4 3 2 28 28 H 1.08994 * 109.47173 * 210.00167 * 6 5 4 29 29 H 1.09005 * 109.47077 * 330.00338 * 6 5 4 30 30 H 0.96995 * 119.99689 * 179.97438 * 10 9 7 31 31 H 1.09009 * 109.46564 * 299.99895 * 17 15 5 32 32 H 1.09001 * 109.47030 * 59.99569 * 17 15 5 33 33 H 0.96701 * 113.99730 * 300.69830 * 19 18 17 34 34 H 1.08997 * 110.48331 * 335.78410 * 20 18 17 35 35 H 1.08993 * 110.48515 * 98.42697 * 20 18 17 36 36 H 1.08998 * 110.71446 * 279.56994 * 21 20 18 37 37 H 1.09001 * 110.76032 * 156.22521 * 21 20 18 38 38 H 1.09001 * 110.48540 * 203.40322 * 22 21 20 39 39 H 1.08999 * 110.48185 * 80.76233 * 22 21 20 40 40 H 1.08997 * 110.03473 * 238.56936 * 23 18 17 41 41 H 1.09008 * 110.02877 * 0.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1175 1.1301 -0.8976 5 7 4.5825 1.1311 -0.8971 6 6 5.3159 0.3420 -1.8899 7 6 5.5669 1.1835 -3.1147 8 1 5.2149 2.2039 -3.1501 9 6 6.2449 0.6503 -4.1903 10 7 6.6731 -0.5924 -4.1473 11 14 6.5554 1.6932 -5.7088 12 1 5.9775 3.0461 -5.5067 13 1 8.0178 1.8095 -5.9388 14 1 5.9181 1.0532 -6.8875 15 6 5.2556 1.8624 0.0131 16 8 6.4684 1.8636 0.0133 17 6 4.5012 2.6787 1.0308 18 6 5.4947 3.4072 1.9381 19 8 6.2547 4.3472 1.1760 20 6 6.4370 2.3899 2.6142 21 6 6.6505 2.9600 4.0393 22 6 5.2538 3.5278 4.3940 23 6 4.7429 4.1307 3.0691 24 1 2.9718 -0.9552 -0.3769 25 1 2.9713 0.1524 1.0165 26 1 2.7537 2.0859 -0.5206 27 1 2.7543 0.9783 -1.9140 28 1 6.2683 0.0215 -1.4678 29 1 4.7275 -0.5334 -2.1650 30 1 7.1497 -0.9675 -4.9042 31 1 3.8739 3.4083 0.5185 32 1 3.8751 2.0203 1.6329 33 1 6.7603 3.9505 0.4534 34 1 5.9665 1.4080 2.6628 35 1 7.3848 2.3337 2.0789 36 1 7.3986 3.7527 4.0294 37 1 6.9337 2.1688 4.7335 38 1 5.3390 4.3012 5.1573 39 1 4.5918 2.7298 4.7303 40 1 4.9586 5.1987 3.0373 41 1 3.6703 3.9625 2.9718 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000073030639.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:20:13 Heat of formation + Delta-G solvation = -97.564208 kcal Electronic energy + Delta-G solvation = -22586.400373 eV Core-core repulsion = 19271.813941 eV Total energy + Delta-G solvation = -3314.586433 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.31615 -39.33154 -37.92206 -36.64295 -35.58939 -34.87459 -32.22710 -31.81807 -29.59221 -29.11973 -26.64048 -25.30025 -24.26915 -21.79070 -20.69707 -19.95450 -18.79205 -18.32506 -17.86357 -17.57661 -16.91789 -16.43178 -16.30808 -15.89325 -15.82895 -15.51300 -14.77596 -14.45124 -14.31667 -14.22869 -13.67886 -13.62552 -13.51853 -13.44498 -13.17145 -12.92897 -12.80001 -12.69211 -12.53822 -12.30819 -12.17459 -11.92868 -11.88383 -11.79234 -11.62942 -11.48052 -11.36439 -10.70667 -10.58330 -10.41030 -9.44619 -8.17837 -6.29617 1.38907 1.42029 1.51897 1.69741 1.85312 1.91366 2.31202 2.45618 3.11523 3.15974 3.35552 3.66765 3.72982 3.93692 3.98439 4.13466 4.15818 4.33084 4.41220 4.55343 4.62681 4.67831 4.78798 4.84604 4.90106 4.99159 5.07586 5.10291 5.12204 5.18393 5.24873 5.29861 5.36281 5.50589 5.56471 5.63005 5.89064 6.13929 6.61746 6.74508 6.79197 6.86188 7.35738 7.54093 8.88828 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.012905 B = 0.005801 C = 0.004406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.230800 B = 4825.197188 C = 6353.681387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C 0.246 3.754 3 C -0.037 4.037 4 C 0.112 3.888 5 N -0.597 5.597 6 C 0.259 3.741 7 C -0.537 4.537 8 H 0.052 0.948 9 C 0.012 3.988 10 N -0.926 5.926 11 Si 0.955 3.045 12 H -0.269 1.269 13 H -0.285 1.285 14 H -0.275 1.275 15 C 0.503 3.497 16 O -0.580 6.580 17 C -0.161 4.161 18 C 0.137 3.863 19 O -0.581 6.581 20 C -0.139 4.139 21 C -0.125 4.125 22 C -0.116 4.116 23 C -0.111 4.111 24 H 0.119 0.881 25 H 0.139 0.861 26 H 0.106 0.894 27 H 0.080 0.920 28 H 0.007 0.993 29 H 0.032 0.968 30 H 0.265 0.735 31 H 0.111 0.889 32 H 0.135 0.865 33 H 0.379 0.621 34 H 0.070 0.930 35 H 0.049 0.951 36 H 0.055 0.945 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.085 0.915 40 H 0.067 0.933 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.495 5.212 15.448 17.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.167 5.167 2 C -0.072 4.072 3 C -0.078 4.078 4 C -0.013 4.013 5 N -0.327 5.327 6 C 0.138 3.862 7 C -0.575 4.575 8 H 0.070 0.930 9 C -0.187 4.187 10 N -0.566 5.566 11 Si 0.781 3.219 12 H -0.193 1.193 13 H -0.211 1.211 14 H -0.200 1.200 15 C 0.293 3.707 16 O -0.460 6.460 17 C -0.200 4.200 18 C 0.097 3.903 19 O -0.390 6.390 20 C -0.176 4.176 21 C -0.163 4.163 22 C -0.154 4.154 23 C -0.148 4.148 24 H 0.137 0.863 25 H 0.157 0.843 26 H 0.124 0.876 27 H 0.099 0.901 28 H 0.025 0.975 29 H 0.050 0.950 30 H 0.074 0.926 31 H 0.129 0.871 32 H 0.153 0.847 33 H 0.230 0.770 34 H 0.089 0.911 35 H 0.068 0.932 36 H 0.074 0.926 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.104 0.896 40 H 0.086 0.914 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -7.748 5.482 15.745 18.384 hybrid contribution 1.344 -0.303 -1.891 2.339 sum -6.404 5.179 13.854 16.118 Atomic orbital electron populations 1.81259 1.14428 1.10372 1.10681 1.29151 0.94946 0.91617 0.91444 1.19834 0.80072 1.03040 1.04902 1.21520 0.79239 0.99262 1.01254 1.48097 1.06662 1.46735 1.31200 1.18793 0.91530 0.90407 0.85444 1.21769 1.36053 0.98956 1.00761 0.92966 1.25685 0.95322 0.96081 1.01582 1.70024 1.39230 1.14959 1.32373 0.85545 0.77681 0.79101 0.79549 1.19333 1.21121 1.20032 1.21211 0.87923 0.79575 0.82015 1.90619 1.16077 1.65428 1.73909 1.22673 0.99900 1.00317 0.97130 1.21815 0.89845 0.88331 0.90349 1.86358 1.65251 1.38378 1.48989 1.22968 0.99690 0.98510 0.96479 1.22527 0.97990 1.00116 0.95649 1.22363 0.95872 1.00803 0.96343 1.22218 1.00226 1.00124 0.92269 0.86291 0.84327 0.87609 0.90099 0.97528 0.95044 0.92638 0.87105 0.84704 0.77017 0.91097 0.93215 0.92649 0.90622 0.90439 0.89624 0.91385 0.88354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -13.11 18.54 20.00 0.37 -12.74 16 2 C 0.25 5.07 15.43 89.44 1.38 6.45 16 3 C -0.04 -0.63 6.03 28.79 0.17 -0.45 16 4 C 0.11 2.60 5.17 86.38 0.45 3.05 16 5 N -0.60 -20.24 2.46 -826.14 -2.03 -22.27 16 6 C 0.26 12.13 5.16 85.63 0.44 12.57 16 7 C -0.54 -28.40 9.38 25.60 0.24 -28.16 16 8 H 0.05 2.77 7.81 -2.91 -0.02 2.74 16 9 C 0.01 0.68 5.46 84.65 0.46 1.14 16 10 N -0.93 -53.09 13.29 21.45 0.28 -52.80 16 11 Si 0.96 43.38 29.54 68.60 2.03 45.40 16 12 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 13 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 14 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 15 C 0.50 16.75 7.14 87.66 0.63 17.37 16 16 O -0.58 -24.64 12.09 11.03 0.13 -24.51 16 17 C -0.16 -3.55 3.18 29.85 0.09 -3.46 16 18 C 0.14 3.39 0.98 -10.07 -0.01 3.38 16 19 O -0.58 -18.48 12.89 -134.91 -1.74 -20.22 16 20 C -0.14 -3.57 4.65 31.70 0.15 -3.42 16 21 C -0.13 -2.53 6.91 31.91 0.22 -2.31 16 22 C -0.12 -1.78 6.83 31.67 0.22 -1.57 16 23 C -0.11 -2.01 6.27 31.32 0.20 -1.81 16 24 H 0.12 2.07 8.14 -2.39 -0.02 2.05 16 25 H 0.14 1.50 7.26 -2.38 -0.02 1.48 16 26 H 0.11 1.86 6.43 -2.39 -0.02 1.85 16 27 H 0.08 2.13 8.07 -2.39 -0.02 2.11 16 28 H 0.01 0.36 7.43 -2.39 -0.02 0.34 16 29 H 0.03 1.47 8.07 -2.38 -0.02 1.45 16 30 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 31 H 0.11 2.19 7.40 -2.38 -0.02 2.18 16 32 H 0.14 1.89 7.22 -2.39 -0.02 1.87 16 33 H 0.38 13.39 6.96 -74.06 -0.52 12.87 16 34 H 0.07 1.72 7.78 -2.39 -0.02 1.70 16 35 H 0.05 1.63 7.17 -2.39 -0.02 1.61 16 36 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.07 1.38 7.95 -2.39 -0.02 1.36 16 41 H 0.10 1.27 7.67 -2.38 -0.02 1.25 16 Total: -1.00 -70.34 338.96 4.20 -66.14 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: 0.52 Total: 18.22 kcal Atomic # 6 Polarization: -1.86 SS G_CDS: 4.64 Total: 2.77 kcal Atomic # 7 Polarization: -86.43 SS G_CDS: -1.37 Total: -87.81 kcal Atomic # 8 Polarization: -43.12 SS G_CDS: -1.61 Total: -44.73 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.40 kcal Total: -70.34 4.20 -66.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073030639.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.429 kcal (2) G-P(sol) polarization free energy of solvation -70.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds