Wall clock time and date at job start Tue Mar 31 2020 01:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35895 * 116.99598 * 2 1 4 4 C 1.38671 * 120.00284 * 359.72898 * 3 2 1 5 5 C 1.38673 * 120.00061 * 179.76369 * 4 3 2 6 6 O 1.35894 * 120.00306 * 180.23279 * 5 4 3 7 7 C 1.42895 * 116.99827 * 0.27567 * 6 5 4 8 8 C 1.38678 * 119.99949 * 0.51056 * 5 4 3 9 9 C 1.50697 * 120.00271 * 179.72486 * 8 5 4 10 10 C 1.52997 * 109.47068 * 270.02017 * 9 8 5 11 11 C 1.52997 * 109.47291 * 180.02562 * 10 9 8 12 12 C 1.50701 * 109.47383 * 179.97438 * 11 10 9 13 13 H 1.08000 * 119.99567 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00034 * 180.02562 * 12 11 10 15 15 N 1.31512 * 120.00100 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99746 * 180.02562 * 14 12 11 17 17 H 1.48493 * 109.47321 * 89.99513 * 16 14 12 18 18 H 1.48503 * 109.46868 * 209.99490 * 16 14 12 19 19 H 1.48498 * 109.47268 * 329.99420 * 16 14 12 20 20 C 1.38678 * 119.99664 * 359.74237 * 8 5 4 21 21 O 1.35893 * 119.99877 * 179.97438 * 20 8 5 22 22 C 1.42905 * 117.00125 * 180.02562 * 21 20 8 23 23 C 1.38673 * 119.99507 * 179.97438 * 3 2 1 24 24 H 1.08996 * 109.47452 * 60.00221 * 1 2 3 25 25 H 1.09005 * 109.47329 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47352 * 299.99768 * 1 2 3 27 27 H 1.08000 * 119.99999 * 0.02562 * 4 3 2 28 28 H 1.09006 * 109.47309 * 299.99547 * 7 6 5 29 29 H 1.09000 * 109.47501 * 59.99976 * 7 6 5 30 30 H 1.08997 * 109.47271 * 180.02562 * 7 6 5 31 31 H 1.09004 * 109.47233 * 30.01916 * 9 8 5 32 32 H 1.08998 * 109.47364 * 150.01668 * 9 8 5 33 33 H 1.09004 * 109.47011 * 300.00034 * 10 9 8 34 34 H 1.08998 * 109.47313 * 59.99619 * 10 9 8 35 35 H 1.09000 * 109.47175 * 299.99460 * 11 10 9 36 36 H 1.08998 * 109.47288 * 59.99561 * 11 10 9 37 37 H 0.97001 * 119.99857 * 180.02562 * 15 14 12 38 38 H 1.08992 * 109.47098 * 59.99860 * 22 21 20 39 39 H 1.09001 * 109.47106 * 180.02562 * 22 21 20 40 40 H 1.08996 * 109.47036 * 299.99479 * 22 21 20 41 41 H 1.07999 * 120.00233 * 0.02562 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2906 2.3738 -0.0057 5 6 1.9201 3.6095 -0.0007 6 8 1.1800 4.7492 -0.0015 7 6 -0.2411 4.5998 -0.0014 8 6 3.3050 3.6821 -0.0008 9 6 3.9891 5.0248 -0.0017 10 6 4.2202 5.4785 -1.4445 11 6 4.9153 6.8414 -1.4454 12 6 5.1435 7.2880 -2.8665 13 1 4.8249 6.6621 -3.6870 14 6 5.7599 8.4952 -3.1193 15 7 6.1483 9.2571 -2.1202 16 14 6.0420 9.0490 -4.8808 17 1 4.8699 9.8324 -5.3472 18 1 7.2604 9.8957 -4.9444 19 1 6.2202 7.8592 -5.7513 20 6 4.0603 2.5190 -0.0004 21 8 5.4173 2.5902 -0.0010 22 6 6.1319 1.3526 -0.0011 23 6 3.4307 1.2834 0.0005 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 0.2121 2.3173 -0.0097 28 1 -0.5488 4.0502 -0.8911 29 1 -0.5488 4.0514 0.8889 30 1 -0.7099 5.5838 -0.0026 31 1 3.3613 5.7529 0.5120 32 1 4.9472 4.9448 0.5119 33 1 4.8481 4.7504 -1.9581 34 1 3.2621 5.5585 -1.9580 35 1 4.2878 7.5697 -0.9317 36 1 5.8734 6.7610 -0.9319 37 1 6.5816 10.1065 -2.2980 38 1 5.8682 0.7809 -0.8908 39 1 7.2035 1.5518 -0.0012 40 1 5.8690 0.7812 0.8891 41 1 4.0189 0.3777 0.0005 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000098128521.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:09 Heat of formation + Delta-G solvation = -101.762111 kcal Electronic energy + Delta-G solvation = -22059.503010 eV Core-core repulsion = 18712.441792 eV Total energy + Delta-G solvation = -3347.061219 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.78483 -38.98461 -38.85680 -35.83458 -34.28490 -32.36800 -30.13566 -29.66294 -28.15454 -27.35333 -27.09007 -25.70908 -23.35282 -21.80430 -21.20670 -19.83291 -19.00626 -17.29988 -16.42853 -16.27688 -16.17671 -16.13122 -15.54850 -15.42952 -15.24977 -14.76253 -14.40808 -14.18412 -13.72866 -12.83775 -12.83497 -12.56100 -12.52148 -12.09561 -11.87867 -11.64565 -11.50255 -11.46248 -11.41501 -11.00881 -10.95282 -10.56597 -10.50727 -10.30831 -9.96902 -9.40670 -9.13931 -8.92785 -8.20461 -8.16019 -7.68469 -5.86170 -3.87149 1.46524 1.52307 2.93279 3.16435 3.39957 3.45439 3.49801 3.75696 3.78011 4.57222 4.77704 4.91164 4.91245 4.94788 5.06351 5.08509 5.10958 5.20379 5.21221 5.23257 5.25975 5.45312 5.49132 5.51533 5.59359 6.02325 6.03596 6.23438 6.41742 6.43243 6.52105 6.80835 7.08070 7.10609 7.20824 7.38717 7.43996 7.57613 7.86307 8.06027 8.17407 8.60917 9.20421 9.75529 11.25302 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.018914 B = 0.004173 C = 0.003724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.026203 B = 6707.584335 C = 7517.452822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.316 6.316 3 C 0.186 3.814 4 C -0.329 4.329 5 C 0.199 3.801 6 O -0.297 6.297 7 C 0.028 3.972 8 C -0.163 4.163 9 C -0.061 4.061 10 C -0.097 4.097 11 C 0.022 3.978 12 C -0.514 4.514 13 H 0.053 0.947 14 C 0.055 3.945 15 N -0.897 5.897 16 Si 0.889 3.111 17 H -0.282 1.282 18 H -0.287 1.287 19 H -0.275 1.275 20 C 0.200 3.800 21 O -0.296 6.296 22 C 0.026 3.974 23 C -0.275 4.275 24 H 0.055 0.945 25 H 0.098 0.902 26 H 0.054 0.946 27 H 0.132 0.868 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.102 0.898 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.045 0.955 34 H 0.044 0.956 35 H 0.015 0.985 36 H 0.015 0.985 37 H 0.258 0.742 38 H 0.056 0.944 39 H 0.101 0.899 40 H 0.054 0.946 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.465 -18.989 7.132 23.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.229 6.229 3 C 0.141 3.859 4 C -0.349 4.349 5 C 0.153 3.847 6 O -0.209 6.209 7 C -0.068 4.068 8 C -0.165 4.165 9 C -0.098 4.098 10 C -0.135 4.135 11 C -0.015 4.015 12 C -0.552 4.552 13 H 0.071 0.929 14 C -0.146 4.146 15 N -0.537 5.537 16 Si 0.717 3.283 17 H -0.208 1.208 18 H -0.213 1.213 19 H -0.200 1.200 20 C 0.153 3.847 21 O -0.208 6.208 22 C -0.069 4.069 23 C -0.295 4.295 24 H 0.074 0.926 25 H 0.117 0.883 26 H 0.073 0.927 27 H 0.150 0.850 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.120 0.880 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.033 0.967 36 H 0.034 0.966 37 H 0.068 0.932 38 H 0.075 0.925 39 H 0.120 0.880 40 H 0.073 0.927 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -11.107 -18.645 7.166 22.855 hybrid contribution -0.398 -0.021 -1.004 1.080 sum -11.505 -18.666 6.162 22.776 Atomic orbital electron populations 1.23031 0.78536 1.03693 1.01418 1.86041 1.21302 1.27035 1.88570 1.18212 0.91234 0.83393 0.93106 1.21056 1.00166 0.91788 1.21875 1.18112 0.90020 0.84442 0.92165 1.86196 1.18594 1.28395 1.87722 1.23065 0.78891 1.03930 1.00867 1.18590 0.89645 0.95763 1.12453 1.20352 0.99163 0.90457 0.99823 1.21542 0.99776 0.99399 0.92781 1.19101 0.95358 0.90445 0.96635 1.21306 1.37658 1.03485 0.92790 0.92880 1.25018 0.95940 0.96820 0.96776 1.69975 1.41244 1.12041 1.30469 0.86641 0.77552 0.78587 0.85494 1.20786 1.21311 1.19956 1.18051 0.82689 0.91653 0.92283 1.86202 1.14745 1.32148 1.87702 1.23097 0.97042 0.85502 1.01243 1.20191 0.92366 0.97389 1.19521 0.92638 0.88342 0.92712 0.85020 0.92811 0.92988 0.88004 0.91423 0.91347 0.93661 0.93736 0.96684 0.96638 0.93192 0.92546 0.88040 0.92738 0.84783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.32 -3.79 10.49 -19.41 -0.20 -3.99 16 3 C 0.19 2.57 6.68 -39.26 -0.26 2.30 16 4 C -0.33 -4.46 8.02 -39.26 -0.31 -4.77 16 5 C 0.20 3.21 6.65 -39.26 -0.26 2.95 16 6 O -0.30 -4.67 9.53 -19.41 -0.18 -4.85 16 7 C 0.03 0.29 9.81 101.05 0.99 1.28 16 8 C -0.16 -2.91 5.16 -104.30 -0.54 -3.45 16 9 C -0.06 -1.22 4.90 -27.89 -0.14 -1.36 16 10 C -0.10 -2.27 5.13 -26.73 -0.14 -2.41 16 11 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 12 C -0.51 -15.44 9.11 -34.44 -0.31 -15.76 16 13 H 0.05 1.56 7.74 -52.49 -0.41 1.15 16 14 C 0.05 1.65 5.46 -17.82 -0.10 1.55 16 15 N -0.90 -28.08 13.29 55.43 0.74 -27.34 16 16 Si 0.89 22.52 29.54 -169.99 -5.02 17.50 16 17 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 18 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 19 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 20 C 0.20 3.26 6.65 -39.26 -0.26 3.00 16 21 O -0.30 -4.71 9.53 -19.40 -0.18 -4.90 16 22 C 0.03 0.28 9.81 101.05 0.99 1.28 16 23 C -0.28 -3.93 8.97 -39.26 -0.35 -4.28 16 24 H 0.05 0.39 7.65 -51.93 -0.40 0.00 16 25 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.37 7.67 -51.93 -0.40 -0.03 16 27 H 0.13 1.39 4.52 -52.49 -0.24 1.16 16 28 H 0.05 0.49 7.65 -51.93 -0.40 0.10 16 29 H 0.05 0.44 7.67 -51.93 -0.40 0.04 16 30 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.07 1.37 7.53 -51.93 -0.39 0.97 16 32 H 0.07 1.38 7.53 -51.93 -0.39 0.99 16 33 H 0.04 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.01 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 38 H 0.06 0.55 7.66 -51.93 -0.40 0.15 16 39 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.05 0.50 7.66 -51.93 -0.40 0.10 16 41 H 0.13 1.63 6.29 -52.49 -0.33 1.30 16 LS Contribution 339.71 15.07 5.12 5.12 Total: -1.00 -34.89 339.71 -5.81 -40.70 By element: Atomic # 1 Polarization: 2.00 SS G_CDS: -6.24 Total: -4.24 kcal Atomic # 6 Polarization: -18.16 SS G_CDS: 0.16 Total: -18.00 kcal Atomic # 7 Polarization: -28.08 SS G_CDS: 0.74 Total: -27.34 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: -0.57 Total: -13.74 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -34.89 -5.81 -40.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000098128521.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.062 kcal (2) G-P(sol) polarization free energy of solvation -34.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds