Wall clock time and date at job start Tue Mar 31 2020 01:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35895 * 116.99598 * 2 1 4 4 C 1.38671 * 120.00284 * 359.72898 * 3 2 1 5 5 C 1.38673 * 120.00061 * 179.76369 * 4 3 2 6 6 O 1.35894 * 120.00306 * 180.23279 * 5 4 3 7 7 C 1.42895 * 116.99827 * 0.27567 * 6 5 4 8 8 C 1.38678 * 119.99949 * 0.51056 * 5 4 3 9 9 C 1.50697 * 120.00271 * 179.72486 * 8 5 4 10 10 C 1.52997 * 109.47068 * 270.02017 * 9 8 5 11 11 C 1.52997 * 109.47291 * 180.02562 * 10 9 8 12 12 C 1.50701 * 109.47383 * 179.97438 * 11 10 9 13 13 H 1.08000 * 119.99567 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00034 * 180.02562 * 12 11 10 15 15 N 1.31512 * 120.00100 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99746 * 180.02562 * 14 12 11 17 17 H 1.48493 * 109.47321 * 89.99513 * 16 14 12 18 18 H 1.48503 * 109.46868 * 209.99490 * 16 14 12 19 19 H 1.48498 * 109.47268 * 329.99420 * 16 14 12 20 20 C 1.38678 * 119.99664 * 359.74237 * 8 5 4 21 21 O 1.35893 * 119.99877 * 179.97438 * 20 8 5 22 22 C 1.42905 * 117.00125 * 180.02562 * 21 20 8 23 23 C 1.38673 * 119.99507 * 179.97438 * 3 2 1 24 24 H 1.08996 * 109.47452 * 60.00221 * 1 2 3 25 25 H 1.09005 * 109.47329 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47352 * 299.99768 * 1 2 3 27 27 H 1.08000 * 119.99999 * 0.02562 * 4 3 2 28 28 H 1.09006 * 109.47309 * 299.99547 * 7 6 5 29 29 H 1.09000 * 109.47501 * 59.99976 * 7 6 5 30 30 H 1.08997 * 109.47271 * 180.02562 * 7 6 5 31 31 H 1.09004 * 109.47233 * 30.01916 * 9 8 5 32 32 H 1.08998 * 109.47364 * 150.01668 * 9 8 5 33 33 H 1.09004 * 109.47011 * 300.00034 * 10 9 8 34 34 H 1.08998 * 109.47313 * 59.99619 * 10 9 8 35 35 H 1.09000 * 109.47175 * 299.99460 * 11 10 9 36 36 H 1.08998 * 109.47288 * 59.99561 * 11 10 9 37 37 H 0.97001 * 119.99857 * 180.02562 * 15 14 12 38 38 H 1.08992 * 109.47098 * 59.99860 * 22 21 20 39 39 H 1.09001 * 109.47106 * 180.02562 * 22 21 20 40 40 H 1.08996 * 109.47036 * 299.99479 * 22 21 20 41 41 H 1.07999 * 120.00233 * 0.02562 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2906 2.3738 -0.0057 5 6 1.9201 3.6095 -0.0007 6 8 1.1800 4.7492 -0.0015 7 6 -0.2411 4.5998 -0.0014 8 6 3.3050 3.6821 -0.0008 9 6 3.9891 5.0248 -0.0017 10 6 4.2202 5.4785 -1.4445 11 6 4.9153 6.8414 -1.4454 12 6 5.1435 7.2880 -2.8665 13 1 4.8249 6.6621 -3.6870 14 6 5.7599 8.4952 -3.1193 15 7 6.1483 9.2571 -2.1202 16 14 6.0420 9.0490 -4.8808 17 1 4.8699 9.8324 -5.3472 18 1 7.2604 9.8957 -4.9444 19 1 6.2202 7.8592 -5.7513 20 6 4.0603 2.5190 -0.0004 21 8 5.4173 2.5902 -0.0010 22 6 6.1319 1.3526 -0.0011 23 6 3.4307 1.2834 0.0005 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 0.2121 2.3173 -0.0097 28 1 -0.5488 4.0502 -0.8911 29 1 -0.5488 4.0514 0.8889 30 1 -0.7099 5.5838 -0.0026 31 1 3.3613 5.7529 0.5120 32 1 4.9472 4.9448 0.5119 33 1 4.8481 4.7504 -1.9581 34 1 3.2621 5.5585 -1.9580 35 1 4.2878 7.5697 -0.9317 36 1 5.8734 6.7610 -0.9319 37 1 6.5816 10.1065 -2.2980 38 1 5.8682 0.7809 -0.8908 39 1 7.2035 1.5518 -0.0012 40 1 5.8690 0.7812 0.8891 41 1 4.0189 0.3777 0.0005 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000098128521.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:09 Heat of formation + Delta-G solvation = -124.399146 kcal Electronic energy + Delta-G solvation = -22060.484626 eV Core-core repulsion = 18712.441792 eV Total energy + Delta-G solvation = -3348.042834 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.86499 -40.02099 -39.85589 -37.08591 -36.06622 -34.33941 -31.69851 -30.75949 -29.03916 -28.60886 -28.08624 -27.01883 -25.13319 -22.90250 -22.64004 -21.67599 -20.00828 -18.45561 -18.34771 -17.39941 -17.33382 -17.10149 -16.61781 -16.41446 -16.38032 -16.33128 -15.69754 -15.47570 -15.30153 -14.42447 -14.12279 -13.95356 -13.44352 -13.42125 -13.35592 -12.98530 -12.61603 -12.58844 -12.48773 -12.47709 -12.37775 -12.26976 -12.17549 -11.97555 -11.40010 -11.28224 -11.12559 -10.90093 -10.53352 -9.23955 -8.90786 -8.17128 -6.29000 0.35625 0.37924 1.39215 1.41999 1.53281 1.95589 2.29841 2.42508 2.64029 2.77203 3.14443 3.89524 3.91222 3.98849 4.02165 4.25287 4.29562 4.37834 4.40060 4.40766 4.42524 4.46411 4.50539 4.61260 4.70767 4.72014 4.75529 4.77433 4.97596 5.07645 5.13358 5.23927 5.30857 5.42680 5.45163 5.58131 5.81759 5.88525 6.16920 6.28816 6.39675 6.52544 6.86777 7.39410 8.94779 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.018914 B = 0.004173 C = 0.003724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.026203 B = 6707.584335 C = 7517.452822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.323 6.323 3 C 0.193 3.807 4 C -0.324 4.324 5 C 0.194 3.806 6 O -0.328 6.328 7 C 0.016 3.984 8 C -0.204 4.204 9 C -0.045 4.045 10 C -0.078 4.078 11 C 0.027 3.973 12 C -0.543 4.543 13 H 0.055 0.945 14 C -0.001 4.001 15 N -0.934 5.934 16 Si 0.968 3.032 17 H -0.270 1.270 18 H -0.278 1.278 19 H -0.264 1.264 20 C 0.195 3.805 21 O -0.326 6.326 22 C 0.017 3.983 23 C -0.280 4.280 24 H 0.063 0.937 25 H 0.125 0.875 26 H 0.067 0.933 27 H 0.163 0.837 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.114 0.886 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.039 0.961 34 H 0.040 0.960 35 H -0.010 1.010 36 H -0.010 1.010 37 H 0.264 0.736 38 H 0.066 0.934 39 H 0.116 0.884 40 H 0.073 0.927 41 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.959 -20.857 6.189 25.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.236 6.236 3 C 0.146 3.854 4 C -0.343 4.343 5 C 0.148 3.852 6 O -0.241 6.241 7 C -0.078 4.078 8 C -0.205 4.205 9 C -0.083 4.083 10 C -0.116 4.116 11 C -0.010 4.010 12 C -0.581 4.581 13 H 0.074 0.926 14 C -0.199 4.199 15 N -0.574 5.574 16 Si 0.792 3.208 17 H -0.196 1.196 18 H -0.204 1.204 19 H -0.189 1.189 20 C 0.148 3.852 21 O -0.239 6.239 22 C -0.077 4.077 23 C -0.299 4.299 24 H 0.082 0.918 25 H 0.143 0.857 26 H 0.085 0.915 27 H 0.180 0.820 28 H 0.086 0.914 29 H 0.092 0.908 30 H 0.133 0.867 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.008 0.992 36 H 0.008 0.992 37 H 0.073 0.927 38 H 0.085 0.915 39 H 0.134 0.866 40 H 0.091 0.909 41 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -12.621 -20.537 6.231 24.897 hybrid contribution -0.012 0.482 -0.654 0.812 sum -12.633 -20.055 5.577 24.350 Atomic orbital electron populations 1.23417 0.76140 1.05914 1.02406 1.86050 1.23746 1.25868 1.87981 1.18351 0.91281 0.84216 0.91546 1.21268 1.01679 0.90549 1.20853 1.18231 0.89573 0.85535 0.91888 1.86156 1.21217 1.29008 1.87696 1.23412 0.76275 1.05511 1.02569 1.18513 0.90893 0.94722 1.16421 1.20014 0.98851 0.92311 0.97079 1.21279 0.98566 0.96562 0.95206 1.18991 0.94002 0.92414 0.95553 1.21680 1.38544 1.04329 0.93565 0.92630 1.26018 0.95147 0.96652 1.02069 1.70113 1.41546 1.12534 1.33214 0.85414 0.77928 0.78396 0.79101 1.19553 1.20373 1.18862 1.18144 0.82916 0.91953 0.92155 1.86158 1.14961 1.35046 1.87727 1.23407 0.97383 0.84269 1.02634 1.20368 0.93107 0.97198 1.19274 0.91800 0.85697 0.91486 0.81978 0.91420 0.90803 0.86731 0.92378 0.92406 0.94199 0.94149 0.99157 0.99171 0.92719 0.91496 0.86622 0.90889 0.82815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 113.37 1.11 1.29 16 2 O -0.32 -6.74 10.49 -92.37 -0.97 -7.71 16 3 C 0.19 4.89 6.68 22.48 0.15 5.04 16 4 C -0.32 -8.12 8.02 22.48 0.18 -7.94 16 5 C 0.19 6.21 6.65 22.48 0.15 6.36 16 6 O -0.33 -10.28 9.53 -92.35 -0.88 -11.16 16 7 C 0.02 0.31 9.81 113.37 1.11 1.42 16 8 C -0.20 -7.48 5.16 -19.65 -0.10 -7.58 16 9 C -0.05 -1.93 4.90 29.85 0.15 -1.78 16 10 C -0.08 -3.84 5.13 30.59 0.16 -3.69 16 11 C 0.03 1.61 4.97 29.85 0.15 1.76 16 12 C -0.54 -33.52 9.11 25.60 0.23 -33.29 16 13 H 0.06 3.32 7.74 -2.91 -0.02 3.29 16 14 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 15 N -0.93 -59.68 13.29 21.45 0.28 -59.39 16 16 Si 0.97 46.39 29.54 68.60 2.03 48.42 16 17 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 18 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 19 H -0.26 -12.15 7.11 99.48 0.71 -11.45 16 20 C 0.19 6.41 6.65 22.48 0.15 6.56 16 21 O -0.33 -10.58 9.53 -92.34 -0.88 -11.46 16 22 C 0.02 0.35 9.81 113.37 1.11 1.47 16 23 C -0.28 -7.63 8.97 22.48 0.20 -7.43 16 24 H 0.06 0.66 7.65 -2.39 -0.02 0.65 16 25 H 0.12 0.81 8.14 -2.38 -0.02 0.79 16 26 H 0.07 0.64 7.67 -2.39 -0.02 0.62 16 27 H 0.16 2.89 4.52 -2.91 -0.01 2.87 16 28 H 0.07 1.08 7.65 -2.38 -0.02 1.06 16 29 H 0.07 1.06 7.67 -2.39 -0.02 1.04 16 30 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.06 2.51 7.53 -2.38 -0.02 2.49 16 32 H 0.06 2.51 7.53 -2.39 -0.02 2.49 16 33 H 0.04 1.95 8.14 -2.38 -0.02 1.93 16 34 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 35 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 36 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 37 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 38 H 0.07 1.23 7.66 -2.39 -0.02 1.21 16 39 H 0.12 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.07 1.22 7.66 -2.39 -0.02 1.20 16 41 H 0.15 3.43 6.29 -2.91 -0.02 3.41 16 Total: -1.00 -77.45 339.71 5.81 -71.64 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: 1.01 Total: 7.10 kcal Atomic # 6 Polarization: -42.65 SS G_CDS: 5.21 Total: -37.43 kcal Atomic # 7 Polarization: -59.68 SS G_CDS: 0.28 Total: -59.39 kcal Atomic # 8 Polarization: -27.60 SS G_CDS: -2.73 Total: -30.33 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.42 kcal Total: -77.45 5.81 -71.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000098128521.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.755 kcal (2) G-P(sol) polarization free energy of solvation -77.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds