Wall clock time and date at job start Tue Mar 31 2020 02:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86799 * 120.00156 * 2 1 4 4 H 1.48501 * 109.47004 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46888 * 300.00186 * 3 2 1 6 6 H 1.48508 * 109.46990 * 60.00020 * 3 2 1 7 7 C 1.38950 * 119.99891 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00176 * 159.85886 * 7 2 1 9 9 N 1.37103 * 120.00204 * 339.86894 * 7 2 1 10 10 C 1.34776 * 119.99533 * 317.55842 * 9 7 2 11 11 O 1.21287 * 120.00371 * 0.02562 * 10 9 7 12 12 C 1.50705 * 119.99603 * 179.97438 * 10 9 7 13 13 N 1.46500 * 109.46899 * 180.02562 * 12 10 9 14 14 C 1.46765 * 124.35163 * 269.72919 * 13 12 10 15 15 C 1.54656 * 105.38439 * 162.85557 * 14 13 12 16 16 C 1.54627 * 101.68642 * 25.76298 * 15 14 13 17 17 C 1.34420 * 124.34783 * 90.02691 * 13 12 10 18 18 O 1.21278 * 124.94306 * 0.43087 * 17 13 12 19 19 C 1.46496 * 120.00001 * 137.55903 * 9 7 2 20 20 C 1.54258 * 110.03526 * 299.85622 * 19 9 7 21 21 C 1.54972 * 104.15800 * 95.75841 * 20 19 9 22 22 C 1.54889 * 102.77669 * 37.88848 * 21 20 19 23 23 C 1.53875 * 110.03179 * 57.07899 * 19 9 7 24 24 H 0.97003 * 120.00038 * 355.12542 * 1 2 3 25 25 H 1.08994 * 109.47274 * 299.99843 * 12 10 9 26 26 H 1.08999 * 109.46646 * 60.00467 * 12 10 9 27 27 H 1.09004 * 110.24113 * 281.98458 * 14 13 12 28 28 H 1.08996 * 110.24531 * 43.98271 * 14 13 12 29 29 H 1.09005 * 111.19105 * 267.59476 * 15 14 13 30 30 H 1.09002 * 110.82538 * 143.77649 * 15 14 13 31 31 H 1.09002 * 110.49160 * 216.30958 * 16 15 14 32 32 H 1.09000 * 110.59739 * 93.72176 * 16 15 14 33 33 H 1.09003 * 110.01268 * 178.46487 * 19 9 7 34 34 H 1.09000 * 110.49206 * 214.39892 * 20 19 9 35 35 H 1.09005 * 110.48977 * 337.05038 * 20 19 9 36 36 H 1.09008 * 110.71469 * 279.57266 * 21 20 19 37 37 H 1.08994 * 110.92513 * 156.30161 * 21 20 19 38 38 H 1.09000 * 110.48362 * 203.40691 * 22 21 20 39 39 H 1.08998 * 110.59561 * 80.81923 * 22 21 20 40 40 H 1.08994 * 110.03391 * 359.95156 * 23 19 9 41 41 H 1.09004 * 110.03103 * 121.38005 * 23 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3463 0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8894 2.3964 1.2126 7 6 2.0089 -1.2034 0.0005 8 1 3.0393 -1.2321 -0.3215 9 7 1.3862 -2.3543 0.4097 10 6 0.5918 -2.3401 1.4983 11 8 0.4273 -1.3092 2.1158 12 6 -0.0932 -3.6050 1.9478 13 7 -0.8933 -3.3287 3.1435 14 6 -0.3945 -3.4454 4.5188 15 6 -1.4000 -2.6549 5.3883 16 6 -2.6857 -2.7369 4.5332 17 6 -2.1802 -2.9413 3.1220 18 8 -2.8403 -2.7795 2.1175 19 6 1.5844 -3.5993 -0.3364 20 6 1.1020 -3.4261 -1.7914 21 6 2.3891 -3.0695 -2.5775 22 6 3.4609 -3.9608 -1.9022 23 6 3.0836 -3.9388 -0.4066 24 1 -0.4850 0.8370 0.0714 25 1 -0.7433 -3.9686 1.1521 26 1 0.6566 -4.3617 2.1787 27 1 -0.3694 -4.4917 4.8234 28 1 0.5992 -3.0047 4.5984 29 1 -1.0820 -1.6202 5.5162 30 1 -1.5422 -3.1399 6.3541 31 1 -3.2516 -1.8080 4.6050 32 1 -3.3000 -3.5818 4.8445 33 1 1.0395 -4.4124 0.1433 34 1 0.6728 -4.3560 -2.1644 35 1 0.3761 -2.6157 -1.8587 36 1 2.6336 -2.0139 -2.4585 37 1 2.2840 -3.3236 -3.6322 38 1 4.4555 -3.5404 -2.0510 39 1 3.4152 -4.9776 -2.2923 40 1 3.6637 -3.1767 0.1137 41 1 3.2663 -4.9167 0.0390 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125295252.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:22:32 Heat of formation + Delta-G solvation = -56.245981 kcal Electronic energy + Delta-G solvation = -23458.023145 eV Core-core repulsion = 20145.228405 eV Total energy + Delta-G solvation = -3312.794740 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.93907 -38.65829 -36.56588 -35.77445 -33.16456 -32.33419 -31.30253 -27.98066 -27.35403 -27.17585 -26.82407 -24.06624 -21.63592 -20.41404 -19.87259 -19.53083 -18.42689 -16.82352 -16.11326 -15.95203 -15.76156 -14.93547 -14.80778 -14.33466 -14.19347 -13.59924 -13.32756 -13.29566 -12.97131 -12.87602 -12.61935 -12.34454 -11.92731 -11.47997 -11.33523 -11.19248 -10.99997 -10.79059 -10.70286 -10.57372 -10.53043 -10.47590 -10.30907 -10.21854 -9.89639 -9.74920 -9.27166 -8.79495 -8.48516 -7.73431 -7.01034 -5.98331 -3.74731 3.09643 3.35930 3.44501 3.46433 3.51868 4.23328 4.42921 4.69502 4.73035 4.98870 5.03954 5.26800 5.29379 5.32631 5.42326 5.53766 5.63030 5.73991 5.77482 5.89595 5.94426 5.99709 6.01318 6.07598 6.14253 6.22363 6.24818 6.30670 6.37956 6.51667 6.53457 6.67914 6.88909 6.99931 7.05884 7.22881 7.65792 7.72882 8.36254 8.72016 9.15502 9.27672 9.76476 10.37244 11.07961 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.015789 B = 0.007157 C = 0.005716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.939755 B = 3911.157371 C = 4897.095034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.073 3.927 3 Si 0.897 3.103 4 H -0.273 1.273 5 H -0.288 1.288 6 H -0.284 1.284 7 C -0.337 4.337 8 H 0.078 0.922 9 N -0.446 5.446 10 C 0.459 3.541 11 O -0.526 6.526 12 C 0.110 3.890 13 N -0.596 5.596 14 C 0.107 3.893 15 C -0.128 4.128 16 C -0.152 4.152 17 C 0.519 3.481 18 O -0.529 6.529 19 C 0.128 3.872 20 C -0.123 4.123 21 C -0.116 4.116 22 C -0.118 4.118 23 C -0.130 4.130 24 H 0.261 0.739 25 H 0.091 0.909 26 H 0.085 0.915 27 H 0.065 0.935 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.062 0.938 34 H 0.050 0.950 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.048 0.952 38 H 0.055 0.945 39 H 0.053 0.947 40 H 0.076 0.924 41 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.701 -10.382 5.765 11.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C -0.138 4.138 3 Si 0.725 3.275 4 H -0.197 1.197 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.464 4.464 8 H 0.096 0.904 9 N -0.169 5.169 10 C 0.244 3.756 11 O -0.403 6.403 12 C -0.016 4.016 13 N -0.330 5.330 14 C -0.016 4.016 15 C -0.166 4.166 16 C -0.192 4.192 17 C 0.307 3.693 18 O -0.405 6.405 19 C 0.023 3.977 20 C -0.162 4.162 21 C -0.154 4.154 22 C -0.156 4.156 23 C -0.169 4.169 24 H 0.072 0.928 25 H 0.109 0.891 26 H 0.103 0.897 27 H 0.083 0.917 28 H 0.096 0.904 29 H 0.101 0.899 30 H 0.102 0.898 31 H 0.115 0.885 32 H 0.115 0.885 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.100 0.900 36 H 0.098 0.902 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.095 0.905 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.134 -9.660 5.434 11.141 hybrid contribution 0.443 0.821 -0.056 0.935 sum 1.577 -8.839 5.378 10.466 Atomic orbital electron populations 1.69930 1.06312 1.27365 1.41977 1.25132 0.94569 0.99042 0.95028 0.86398 0.79960 0.83864 0.77316 1.19724 1.21452 1.20968 1.18816 0.94937 0.84683 1.47965 0.90409 1.43379 1.44649 1.07099 1.21805 1.20241 0.83764 0.89397 0.82151 1.90511 1.61869 1.32600 1.55308 1.21312 0.95059 0.97911 0.87314 1.47722 1.11594 1.67622 1.06029 1.22013 0.99022 0.99424 0.81134 1.22573 0.94195 1.01949 0.97914 1.22272 0.98753 1.04428 0.93790 1.20732 0.81858 0.75707 0.91039 1.90719 1.61015 1.51233 1.37583 1.21698 0.94528 0.88416 0.93060 1.22576 0.98186 1.00569 0.94827 1.22452 0.94903 1.00968 0.97060 1.22271 0.98686 0.98881 0.95775 1.22491 0.97382 1.00501 0.96487 0.92841 0.89091 0.89664 0.91666 0.90367 0.89854 0.89781 0.88477 0.88495 0.91936 0.93160 0.90045 0.90153 0.93298 0.92601 0.92820 0.90515 0.92986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -25.11 11.71 55.50 0.65 -24.46 16 2 C 0.07 2.07 4.32 -17.47 -0.08 1.99 16 3 Si 0.90 22.22 29.60 -169.99 -5.03 17.19 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -7.28 7.11 56.52 0.40 -6.88 16 7 C -0.34 -8.99 6.98 -14.93 -0.10 -9.09 16 8 H 0.08 2.02 6.88 -52.49 -0.36 1.66 16 9 N -0.45 -10.82 2.40 -106.55 -0.26 -11.08 16 10 C 0.46 11.57 7.05 -10.98 -0.08 11.49 16 11 O -0.53 -15.46 14.08 5.55 0.08 -15.38 16 12 C 0.11 2.19 4.73 -5.19 -0.02 2.16 16 13 N -0.60 -11.14 2.42 -173.67 -0.42 -11.56 16 14 C 0.11 1.48 7.36 -3.03 -0.02 1.46 16 15 C -0.13 -1.53 7.19 -25.01 -0.18 -1.71 16 16 C -0.15 -2.13 6.86 -26.74 -0.18 -2.31 16 17 C 0.52 10.44 8.02 -10.86 -0.09 10.35 16 18 O -0.53 -13.20 17.59 5.56 0.10 -13.10 16 19 C 0.13 2.48 3.26 -66.82 -0.22 2.26 16 20 C -0.12 -2.35 6.13 -25.03 -0.15 -2.50 16 21 C -0.12 -2.02 6.56 -24.69 -0.16 -2.18 16 22 C -0.12 -1.80 6.83 -25.07 -0.17 -1.97 16 23 C -0.13 -2.18 6.19 -25.61 -0.16 -2.34 16 24 H 0.26 7.84 8.32 -40.82 -0.34 7.50 16 25 H 0.09 1.87 7.60 -51.93 -0.39 1.47 16 26 H 0.09 1.36 7.76 -51.93 -0.40 0.96 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.10 1.35 8.14 -51.93 -0.42 0.92 16 32 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.06 1.08 5.83 -51.93 -0.30 0.78 16 34 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.08 1.89 8.02 -51.93 -0.42 1.47 16 36 H 0.08 1.60 7.16 -51.92 -0.37 1.22 16 37 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.08 1.44 6.82 -51.93 -0.35 1.09 16 41 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 328.54 15.07 4.95 4.95 Total: -1.00 -36.07 328.54 -7.94 -44.01 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -6.39 Total: 1.80 kcal Atomic # 6 Polarization: 9.23 SS G_CDS: -1.62 Total: 7.62 kcal Atomic # 7 Polarization: -47.07 SS G_CDS: -0.03 Total: -47.09 kcal Atomic # 8 Polarization: -28.65 SS G_CDS: 0.18 Total: -28.48 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.03 Total: 17.19 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -36.07 -7.94 -44.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125295252.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.234 kcal (2) G-P(sol) polarization free energy of solvation -36.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds