Wall clock time and date at job start Tue Mar 31 2020 02:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86799 * 120.00156 * 2 1 4 4 H 1.48501 * 109.47004 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46888 * 300.00186 * 3 2 1 6 6 H 1.48508 * 109.46990 * 60.00020 * 3 2 1 7 7 C 1.38950 * 119.99891 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00176 * 159.85886 * 7 2 1 9 9 N 1.37103 * 120.00204 * 339.86894 * 7 2 1 10 10 C 1.34776 * 119.99533 * 317.55842 * 9 7 2 11 11 O 1.21287 * 120.00371 * 0.02562 * 10 9 7 12 12 C 1.50705 * 119.99603 * 179.97438 * 10 9 7 13 13 N 1.46500 * 109.46899 * 180.02562 * 12 10 9 14 14 C 1.46765 * 124.35163 * 269.72919 * 13 12 10 15 15 C 1.54656 * 105.38439 * 162.85557 * 14 13 12 16 16 C 1.54627 * 101.68642 * 25.76298 * 15 14 13 17 17 C 1.34420 * 124.34783 * 90.02691 * 13 12 10 18 18 O 1.21278 * 124.94306 * 0.43087 * 17 13 12 19 19 C 1.46496 * 120.00001 * 137.55903 * 9 7 2 20 20 C 1.54258 * 110.03526 * 299.85622 * 19 9 7 21 21 C 1.54972 * 104.15800 * 95.75841 * 20 19 9 22 22 C 1.54889 * 102.77669 * 37.88848 * 21 20 19 23 23 C 1.53875 * 110.03179 * 57.07899 * 19 9 7 24 24 H 0.97003 * 120.00038 * 355.12542 * 1 2 3 25 25 H 1.08994 * 109.47274 * 299.99843 * 12 10 9 26 26 H 1.08999 * 109.46646 * 60.00467 * 12 10 9 27 27 H 1.09004 * 110.24113 * 281.98458 * 14 13 12 28 28 H 1.08996 * 110.24531 * 43.98271 * 14 13 12 29 29 H 1.09005 * 111.19105 * 267.59476 * 15 14 13 30 30 H 1.09002 * 110.82538 * 143.77649 * 15 14 13 31 31 H 1.09002 * 110.49160 * 216.30958 * 16 15 14 32 32 H 1.09000 * 110.59739 * 93.72176 * 16 15 14 33 33 H 1.09003 * 110.01268 * 178.46487 * 19 9 7 34 34 H 1.09000 * 110.49206 * 214.39892 * 20 19 9 35 35 H 1.09005 * 110.48977 * 337.05038 * 20 19 9 36 36 H 1.09008 * 110.71469 * 279.57266 * 21 20 19 37 37 H 1.08994 * 110.92513 * 156.30161 * 21 20 19 38 38 H 1.09000 * 110.48362 * 203.40691 * 22 21 20 39 39 H 1.08998 * 110.59561 * 80.81923 * 22 21 20 40 40 H 1.08994 * 110.03391 * 359.95156 * 23 19 9 41 41 H 1.09004 * 110.03103 * 121.38005 * 23 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3463 0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8894 2.3964 1.2126 7 6 2.0089 -1.2034 0.0005 8 1 3.0393 -1.2321 -0.3215 9 7 1.3862 -2.3543 0.4097 10 6 0.5918 -2.3401 1.4983 11 8 0.4273 -1.3092 2.1158 12 6 -0.0932 -3.6050 1.9478 13 7 -0.8933 -3.3287 3.1435 14 6 -0.3945 -3.4454 4.5188 15 6 -1.4000 -2.6549 5.3883 16 6 -2.6857 -2.7369 4.5332 17 6 -2.1802 -2.9413 3.1220 18 8 -2.8403 -2.7795 2.1175 19 6 1.5844 -3.5993 -0.3364 20 6 1.1020 -3.4261 -1.7914 21 6 2.3891 -3.0695 -2.5775 22 6 3.4609 -3.9608 -1.9022 23 6 3.0836 -3.9388 -0.4066 24 1 -0.4850 0.8370 0.0714 25 1 -0.7433 -3.9686 1.1521 26 1 0.6566 -4.3617 2.1787 27 1 -0.3694 -4.4917 4.8234 28 1 0.5992 -3.0047 4.5984 29 1 -1.0820 -1.6202 5.5162 30 1 -1.5422 -3.1399 6.3541 31 1 -3.2516 -1.8080 4.6050 32 1 -3.3000 -3.5818 4.8445 33 1 1.0395 -4.4124 0.1433 34 1 0.6728 -4.3560 -2.1644 35 1 0.3761 -2.6157 -1.8587 36 1 2.6336 -2.0139 -2.4585 37 1 2.2840 -3.3236 -3.6322 38 1 4.4555 -3.5404 -2.0510 39 1 3.4152 -4.9776 -2.2923 40 1 3.6637 -3.1767 0.1137 41 1 3.2663 -4.9167 0.0390 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125295252.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:22:31 Heat of formation + Delta-G solvation = -80.793489 kcal Electronic energy + Delta-G solvation = -23459.087605 eV Core-core repulsion = 20145.228405 eV Total energy + Delta-G solvation = -3313.859200 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.42404 -40.33968 -38.26734 -37.29688 -35.06673 -33.91955 -33.11535 -29.38896 -29.02922 -28.41150 -28.34496 -25.98849 -22.76205 -22.13402 -21.25846 -21.12694 -20.06663 -18.53120 -17.69780 -17.59093 -17.19368 -16.78308 -16.29886 -15.97863 -15.76340 -15.37369 -15.05554 -14.69890 -14.48215 -14.23140 -14.07985 -13.72438 -13.30030 -13.23655 -13.10896 -12.94033 -12.47444 -12.39753 -12.26617 -12.21207 -12.03425 -11.85781 -11.80412 -11.75806 -11.48436 -11.17118 -10.82830 -10.76708 -10.31080 -9.50463 -9.01907 -8.13516 -5.90377 1.32650 1.38731 1.46944 1.58415 2.14845 2.29582 2.46459 3.20947 3.30166 3.48578 3.66885 3.87262 3.96395 4.05085 4.10954 4.25347 4.26040 4.37046 4.41537 4.61287 4.68162 4.72796 4.74203 4.84942 4.88283 4.90282 4.98121 5.06341 5.15883 5.22852 5.25915 5.28828 5.47866 5.48572 5.56940 5.64292 5.73923 6.24776 6.25575 7.08113 7.19156 7.31487 7.76007 8.39965 8.92002 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.015789 B = 0.007157 C = 0.005716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.939755 B = 3911.157371 C = 4897.095034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.018 3.982 3 Si 0.953 3.047 4 H -0.252 1.252 5 H -0.283 1.283 6 H -0.300 1.300 7 C -0.327 4.327 8 H 0.083 0.917 9 N -0.458 5.458 10 C 0.443 3.557 11 O -0.579 6.579 12 C 0.118 3.882 13 N -0.602 5.602 14 C 0.100 3.900 15 C -0.117 4.117 16 C -0.141 4.141 17 C 0.495 3.505 18 O -0.596 6.596 19 C 0.117 3.883 20 C -0.122 4.122 21 C -0.116 4.116 22 C -0.108 4.108 23 C -0.124 4.124 24 H 0.249 0.751 25 H 0.080 0.920 26 H 0.132 0.868 27 H 0.112 0.888 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.136 0.864 31 H 0.093 0.907 32 H 0.136 0.864 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.026 0.974 36 H 0.044 0.956 37 H 0.071 0.929 38 H 0.064 0.936 39 H 0.087 0.913 40 H 0.051 0.949 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.413 -13.428 7.030 15.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.187 4.187 3 Si 0.779 3.221 4 H -0.176 1.176 5 H -0.209 1.209 6 H -0.227 1.227 7 C -0.455 4.455 8 H 0.101 0.899 9 N -0.180 5.180 10 C 0.230 3.770 11 O -0.460 6.460 12 C -0.008 4.008 13 N -0.334 5.334 14 C -0.022 4.022 15 C -0.154 4.154 16 C -0.181 4.181 17 C 0.285 3.715 18 O -0.478 6.478 19 C 0.013 3.987 20 C -0.161 4.161 21 C -0.154 4.154 22 C -0.145 4.145 23 C -0.162 4.162 24 H 0.058 0.942 25 H 0.098 0.902 26 H 0.150 0.850 27 H 0.130 0.870 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.154 0.846 31 H 0.111 0.889 32 H 0.154 0.846 33 H 0.105 0.895 34 H 0.101 0.899 35 H 0.045 0.955 36 H 0.063 0.937 37 H 0.090 0.910 38 H 0.083 0.917 39 H 0.105 0.895 40 H 0.070 0.930 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.921 -12.747 6.707 14.697 hybrid contribution -0.040 1.682 -0.465 1.746 sum 2.881 -11.064 6.243 13.026 Atomic orbital electron populations 1.70092 1.07994 1.27001 1.45464 1.25930 0.95054 1.02331 0.95384 0.85521 0.79855 0.80228 0.76514 1.17556 1.20921 1.22709 1.19054 0.95029 0.85694 1.45727 0.89916 1.43656 1.44068 1.08147 1.22145 1.21220 0.83305 0.90592 0.81871 1.90468 1.63536 1.34946 1.57067 1.21192 0.95546 0.95977 0.88116 1.48041 1.11267 1.66482 1.07568 1.22415 0.98660 1.02423 0.78686 1.22640 0.91990 1.01329 0.99467 1.22325 1.00103 1.05795 0.89895 1.21953 0.82273 0.74505 0.92788 1.90666 1.62739 1.54007 1.40355 1.22062 0.97140 0.86787 0.92668 1.22541 0.97909 1.00084 0.95554 1.22406 0.94868 0.99521 0.98585 1.22250 0.98010 1.00123 0.94145 1.22441 0.94383 1.01566 0.97807 0.94217 0.90224 0.85032 0.87026 0.91544 0.91773 0.84593 0.88854 0.84632 0.89499 0.89947 0.95485 0.93715 0.90999 0.91674 0.89467 0.93004 0.89266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -56.42 11.71 21.66 0.25 -56.17 16 2 C 0.02 1.07 4.32 84.93 0.37 1.44 16 3 Si 0.95 47.47 29.60 68.60 2.03 49.50 16 4 H -0.25 -11.55 7.11 99.48 0.71 -10.84 16 5 H -0.28 -13.70 7.11 99.48 0.71 -13.00 16 6 H -0.30 -15.63 7.11 99.48 0.71 -14.92 16 7 C -0.33 -17.92 6.98 84.04 0.59 -17.33 16 8 H 0.08 4.36 6.88 -2.91 -0.02 4.34 16 9 N -0.46 -22.59 2.40 -609.40 -1.46 -24.06 16 10 C 0.44 22.87 7.05 87.66 0.62 23.49 16 11 O -0.58 -35.55 14.08 -3.05 -0.04 -35.59 16 12 C 0.12 4.64 4.73 85.63 0.41 5.05 16 13 N -0.60 -22.03 2.42 -821.96 -1.99 -24.02 16 14 C 0.10 2.46 7.36 86.89 0.64 3.10 16 15 C -0.12 -2.43 7.19 31.71 0.23 -2.20 16 16 C -0.14 -3.70 6.86 30.59 0.21 -3.49 16 17 C 0.50 20.12 8.02 87.90 0.71 20.82 16 18 O -0.60 -31.25 17.59 -3.02 -0.05 -31.30 16 19 C 0.12 4.39 3.26 45.71 0.15 4.54 16 20 C -0.12 -4.62 6.13 31.70 0.19 -4.43 16 21 C -0.12 -3.88 6.56 31.91 0.21 -3.67 16 22 C -0.11 -2.89 6.83 31.67 0.22 -2.67 16 23 C -0.12 -3.77 6.19 31.32 0.19 -3.57 16 24 H 0.25 16.04 8.32 -92.71 -0.77 15.27 16 25 H 0.08 3.31 7.60 -2.39 -0.02 3.29 16 26 H 0.13 3.83 7.76 -2.39 -0.02 3.81 16 27 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 30 H 0.14 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 32 H 0.14 2.50 8.14 -2.39 -0.02 2.48 16 33 H 0.09 2.79 5.83 -2.39 -0.01 2.78 16 34 H 0.08 2.54 8.14 -2.39 -0.02 2.53 16 35 H 0.03 1.30 8.02 -2.38 -0.02 1.28 16 36 H 0.04 1.79 7.16 -2.38 -0.02 1.77 16 37 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.05 1.85 6.82 -2.39 -0.02 1.83 16 41 H 0.09 2.08 8.14 -2.38 -0.02 2.06 16 Total: -1.00 -87.77 328.54 4.47 -83.30 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: 1.01 Total: 17.25 kcal Atomic # 6 Polarization: 16.36 SS G_CDS: 4.72 Total: 21.08 kcal Atomic # 7 Polarization: -101.05 SS G_CDS: -3.20 Total: -104.24 kcal Atomic # 8 Polarization: -66.79 SS G_CDS: -0.10 Total: -66.89 kcal Atomic # 14 Polarization: 47.47 SS G_CDS: 2.03 Total: 49.50 kcal Total: -87.77 4.47 -83.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125295252.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.509 kcal (2) G-P(sol) polarization free energy of solvation -87.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds