Wall clock time and date at job start Tue Mar 31 2020 02:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 120.00372 * 2 1 4 4 H 1.48492 * 109.47608 * 240.00046 * 3 2 1 5 5 H 1.48506 * 109.46921 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47251 * 119.99581 * 3 2 1 7 7 C 1.38809 * 119.99493 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99766 * 159.32420 * 7 2 1 9 9 N 1.36943 * 120.00208 * 339.31289 * 7 2 1 10 10 C 1.46500 * 120.00130 * 321.74365 * 9 7 2 11 11 C 1.52990 * 109.47095 * 269.99769 * 10 9 7 12 12 N 1.46500 * 109.47095 * 180.02562 * 11 10 9 13 13 C 1.33876 * 122.76478 * 269.70988 * 12 11 10 14 14 O 1.21224 * 125.39153 * 359.97438 * 13 12 11 15 15 C 1.51313 * 109.20935 * 179.84388 * 13 12 11 16 16 C 1.54225 * 103.55498 * 0.38393 * 15 13 12 17 17 C 1.33882 * 122.76354 * 90.00033 * 12 11 10 18 18 O 1.21226 * 125.39097 * 359.97438 * 17 12 11 19 19 C 1.46498 * 119.99917 * 141.73801 * 9 7 2 20 20 C 1.54968 * 110.92464 * 310.89673 * 19 9 7 21 21 C 1.54265 * 104.16167 * 156.29330 * 20 19 9 22 22 C 1.53880 * 106.64070 * 336.44556 * 21 20 19 23 23 C 1.54266 * 106.59581 * 359.97086 * 22 21 20 24 24 H 0.96999 * 119.99285 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.46850 * 29.99736 * 10 9 7 26 26 H 1.09000 * 109.46678 * 149.99584 * 10 9 7 27 27 H 1.09004 * 109.47244 * 299.99725 * 11 10 9 28 28 H 1.09001 * 109.47761 * 59.99840 * 11 10 9 29 29 H 1.08999 * 110.79616 * 241.77515 * 15 13 12 30 30 H 1.08994 * 110.55177 * 118.87629 * 15 13 12 31 31 H 1.08996 * 110.60746 * 241.26443 * 16 15 13 32 32 H 1.08995 * 110.60716 * 118.29708 * 16 15 13 33 33 H 1.08990 * 110.67275 * 187.58521 * 19 9 7 34 34 H 1.08995 * 110.48009 * 37.63725 * 20 19 9 35 35 H 1.09003 * 110.52538 * 274.97208 * 20 19 9 36 36 H 1.08996 * 110.03237 * 217.13387 * 21 20 19 37 37 H 1.09004 * 110.03133 * 95.75284 * 21 20 19 38 38 H 1.08994 * 110.03664 * 119.25740 * 22 21 20 39 39 H 1.09004 * 110.02862 * 240.64587 * 22 21 20 40 40 H 1.09008 * 110.48127 * 142.29107 * 23 22 21 41 41 H 1.08999 * 110.49158 * 264.80161 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1041 1.6964 -1.2124 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0380 -1.2322 -0.3308 9 7 1.3916 -2.3501 0.4179 10 6 0.4662 -2.3115 1.5529 11 6 1.2390 -2.5595 2.8497 12 7 0.3135 -2.5216 3.9847 13 6 0.0362 -1.3971 4.6562 14 8 0.5019 -0.3037 4.4173 15 6 -0.9529 -1.7067 5.7587 16 6 -1.1943 -3.2229 5.6125 17 6 -0.3204 -3.6097 4.4393 18 8 -0.2119 -4.7275 3.9830 19 6 1.6553 -3.6166 -0.2696 20 6 1.5169 -3.4525 -1.8043 21 6 2.3771 -4.5939 -2.3850 22 6 3.4069 -4.9638 -1.3030 23 6 3.1376 -4.0338 -0.1020 24 1 -0.4849 0.8401 0.0004 25 1 -0.0138 -1.3339 1.5973 26 1 -0.2930 -3.0838 1.4290 27 1 1.7190 -3.5372 2.8054 28 1 1.9983 -1.7874 2.9737 29 1 -1.8812 -1.1546 5.6119 30 1 -0.5226 -1.4790 6.7338 31 1 -2.2426 -3.4251 5.3930 32 1 -0.8815 -3.7498 6.5139 33 1 0.9901 -4.3987 0.0962 34 1 1.9042 -2.4841 -2.1208 35 1 0.4764 -3.5662 -2.1086 36 1 2.8878 -4.2551 -3.2863 37 1 1.7495 -5.4554 -2.6132 38 1 3.2785 -6.0045 -1.0056 39 1 4.4174 -4.8052 -1.6796 40 1 3.2789 -4.5713 0.8358 41 1 3.7887 -3.1606 -0.1421 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000151126059.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:21:57 Heat of formation + Delta-G solvation = -55.146545 kcal Electronic energy + Delta-G solvation = -23009.882761 eV Core-core repulsion = 19697.135697 eV Total energy + Delta-G solvation = -3312.747065 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.48209 -38.20986 -37.67951 -35.56557 -34.78047 -33.01641 -31.02964 -28.42945 -27.83579 -26.26293 -26.00465 -24.13245 -22.07008 -21.46654 -19.53809 -19.35221 -18.99485 -17.03254 -16.62256 -16.17870 -16.08452 -15.42611 -14.77074 -14.44173 -14.09714 -13.94063 -13.79991 -13.72102 -13.23678 -13.01336 -12.70707 -12.51674 -12.33721 -11.97781 -11.36077 -11.16327 -11.08160 -10.85682 -10.71793 -10.56808 -10.39091 -10.27583 -10.23825 -9.97759 -9.83276 -9.72802 -9.60380 -9.47839 -9.19947 -8.43343 -6.54531 -5.78091 -3.38130 1.77559 2.89809 3.05220 3.40793 3.46953 3.50211 4.20390 4.36645 4.50531 4.52563 4.84213 5.26409 5.31687 5.39191 5.43046 5.48658 5.56703 5.61128 5.72090 5.81632 6.02706 6.15682 6.21995 6.26713 6.29196 6.40519 6.45410 6.54793 6.60175 6.66004 6.80406 6.85252 7.06522 7.17710 7.28433 7.37571 7.60961 7.63715 7.85408 8.11692 8.53424 9.19052 9.81580 10.39487 11.21776 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.013311 B = 0.007335 C = 0.005145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.998750 B = 3816.510085 C = 5441.335595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.020 3.980 3 Si 0.896 3.104 4 H -0.282 1.282 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.262 4.262 8 H 0.063 0.937 9 N -0.569 5.569 10 C 0.139 3.861 11 C 0.077 3.923 12 N -0.565 5.565 13 C 0.519 3.481 14 O -0.472 6.472 15 C -0.158 4.158 16 C -0.157 4.157 17 C 0.523 3.477 18 O -0.490 6.490 19 C 0.170 3.830 20 C -0.125 4.125 21 C -0.123 4.123 22 C -0.120 4.120 23 C -0.138 4.138 24 H 0.255 0.745 25 H 0.100 0.900 26 H 0.026 0.974 27 H 0.073 0.927 28 H 0.089 0.911 29 H 0.117 0.883 30 H 0.114 0.886 31 H 0.116 0.884 32 H 0.115 0.885 33 H 0.053 0.947 34 H 0.080 0.920 35 H 0.049 0.951 36 H 0.052 0.948 37 H 0.050 0.950 38 H 0.051 0.949 39 H 0.051 0.949 40 H 0.047 0.953 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.618 -6.875 8.938 11.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.181 4.181 3 Si 0.725 3.275 4 H -0.208 1.208 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.392 4.392 8 H 0.080 0.920 9 N -0.287 5.287 10 C 0.012 3.988 11 C -0.045 4.045 12 N -0.308 5.308 13 C 0.307 3.693 14 O -0.343 6.343 15 C -0.198 4.198 16 C -0.197 4.197 17 C 0.311 3.689 18 O -0.362 6.362 19 C 0.062 3.938 20 C -0.164 4.164 21 C -0.161 4.161 22 C -0.158 4.158 23 C -0.178 4.178 24 H 0.065 0.935 25 H 0.117 0.883 26 H 0.045 0.955 27 H 0.092 0.908 28 H 0.107 0.893 29 H 0.135 0.865 30 H 0.132 0.868 31 H 0.135 0.865 32 H 0.133 0.867 33 H 0.071 0.929 34 H 0.099 0.901 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.416 -6.716 8.496 10.922 hybrid contribution 0.475 0.858 -0.024 0.981 sum -0.941 -5.858 8.472 10.343 Atomic orbital electron populations 1.69966 1.05647 1.25909 1.50901 1.25189 0.94969 0.98736 0.99249 0.86484 0.79313 0.83451 0.78215 1.20792 1.21642 1.20679 1.18836 0.93932 0.85080 1.41318 0.91991 1.43641 1.51612 1.03688 1.29739 1.21144 0.91159 1.02956 0.83586 1.22946 0.92969 1.02876 0.85706 1.46887 1.42071 1.10543 1.31274 1.20736 0.81870 0.83682 0.82987 1.90813 1.52360 1.23194 1.67895 1.22462 1.01096 0.96418 0.99819 1.22454 1.02402 0.96162 0.98713 1.20741 0.79857 0.84021 0.84248 1.90745 1.62795 1.21173 1.61536 1.21438 0.92833 0.88292 0.91224 1.22623 0.98150 0.98416 0.97241 1.22089 0.97585 0.98693 0.97752 1.22042 0.98353 0.98815 0.96597 1.22809 1.00527 0.98525 0.95893 0.93492 0.88282 0.95519 0.90807 0.89296 0.86487 0.86752 0.86539 0.86726 0.92905 0.90144 0.93185 0.92953 0.93109 0.93019 0.92995 0.93402 0.91213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.34 11.47 55.49 0.64 -24.71 16 2 C 0.02 0.54 4.97 -17.43 -0.09 0.46 16 3 Si 0.90 22.05 29.60 -169.99 -5.03 17.02 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.26 -6.96 7.67 -15.06 -0.12 -7.08 16 8 H 0.06 1.65 6.97 -52.49 -0.37 1.29 16 9 N -0.57 -13.86 2.48 -163.36 -0.41 -14.26 16 10 C 0.14 3.29 5.62 -4.05 -0.02 3.27 16 11 C 0.08 1.59 5.88 -4.05 -0.02 1.56 16 12 N -0.57 -9.72 2.55 -115.34 -0.29 -10.02 16 13 C 0.52 8.44 8.08 -11.09 -0.09 8.35 16 14 O -0.47 -9.80 17.47 5.61 0.10 -9.70 16 15 C -0.16 -1.51 7.03 -26.94 -0.19 -1.70 16 16 C -0.16 -1.43 7.03 -26.94 -0.19 -1.62 16 17 C 0.52 7.88 8.08 -11.08 -0.09 7.79 16 18 O -0.49 -8.95 17.48 5.60 0.10 -8.85 16 19 C 0.17 3.62 3.43 -65.89 -0.23 3.39 16 20 C -0.13 -2.56 6.32 -25.03 -0.16 -2.72 16 21 C -0.12 -2.04 6.80 -25.61 -0.17 -2.22 16 22 C -0.12 -1.93 6.80 -25.61 -0.17 -2.11 16 23 C -0.14 -2.60 6.41 -25.07 -0.16 -2.76 16 24 H 0.26 7.17 8.31 -40.82 -0.34 6.84 16 25 H 0.10 2.68 5.54 -51.93 -0.29 2.39 16 26 H 0.03 0.63 7.90 -51.93 -0.41 0.22 16 27 H 0.07 1.48 7.83 -51.93 -0.41 1.07 16 28 H 0.09 1.98 7.82 -51.93 -0.41 1.57 16 29 H 0.12 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.12 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.11 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.05 1.12 7.83 -51.93 -0.41 0.71 16 34 H 0.08 1.85 6.98 -51.93 -0.36 1.49 16 35 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.05 0.86 8.14 -51.92 -0.42 0.44 16 41 H 0.07 1.42 6.87 -51.93 -0.36 1.07 16 LS Contribution 333.97 15.07 5.03 5.03 Total: -1.00 -31.97 333.97 -7.93 -39.90 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -6.37 Total: 0.98 kcal Atomic # 6 Polarization: 6.31 SS G_CDS: -1.70 Total: 4.61 kcal Atomic # 7 Polarization: -48.92 SS G_CDS: -0.06 Total: -48.99 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: 0.20 Total: -18.56 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.03 Total: 17.02 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.97 -7.93 -39.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000151126059.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.247 kcal (2) G-P(sol) polarization free energy of solvation -31.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds