Wall clock time and date at job start Tue Mar 31 2020 02:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 120.00372 * 2 1 4 4 H 1.48492 * 109.47608 * 240.00046 * 3 2 1 5 5 H 1.48506 * 109.46921 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47251 * 119.99581 * 3 2 1 7 7 C 1.38809 * 119.99493 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99766 * 159.32420 * 7 2 1 9 9 N 1.36943 * 120.00208 * 339.31289 * 7 2 1 10 10 C 1.46500 * 120.00130 * 321.74365 * 9 7 2 11 11 C 1.52990 * 109.47095 * 269.99769 * 10 9 7 12 12 N 1.46500 * 109.47095 * 180.02562 * 11 10 9 13 13 C 1.33876 * 122.76478 * 269.70988 * 12 11 10 14 14 O 1.21224 * 125.39153 * 359.97438 * 13 12 11 15 15 C 1.51313 * 109.20935 * 179.84388 * 13 12 11 16 16 C 1.54225 * 103.55498 * 0.38393 * 15 13 12 17 17 C 1.33882 * 122.76354 * 90.00033 * 12 11 10 18 18 O 1.21226 * 125.39097 * 359.97438 * 17 12 11 19 19 C 1.46498 * 119.99917 * 141.73801 * 9 7 2 20 20 C 1.54968 * 110.92464 * 310.89673 * 19 9 7 21 21 C 1.54265 * 104.16167 * 156.29330 * 20 19 9 22 22 C 1.53880 * 106.64070 * 336.44556 * 21 20 19 23 23 C 1.54266 * 106.59581 * 359.97086 * 22 21 20 24 24 H 0.96999 * 119.99285 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.46850 * 29.99736 * 10 9 7 26 26 H 1.09000 * 109.46678 * 149.99584 * 10 9 7 27 27 H 1.09004 * 109.47244 * 299.99725 * 11 10 9 28 28 H 1.09001 * 109.47761 * 59.99840 * 11 10 9 29 29 H 1.08999 * 110.79616 * 241.77515 * 15 13 12 30 30 H 1.08994 * 110.55177 * 118.87629 * 15 13 12 31 31 H 1.08996 * 110.60746 * 241.26443 * 16 15 13 32 32 H 1.08995 * 110.60716 * 118.29708 * 16 15 13 33 33 H 1.08990 * 110.67275 * 187.58521 * 19 9 7 34 34 H 1.08995 * 110.48009 * 37.63725 * 20 19 9 35 35 H 1.09003 * 110.52538 * 274.97208 * 20 19 9 36 36 H 1.08996 * 110.03237 * 217.13387 * 21 20 19 37 37 H 1.09004 * 110.03133 * 95.75284 * 21 20 19 38 38 H 1.08994 * 110.03664 * 119.25740 * 22 21 20 39 39 H 1.09004 * 110.02862 * 240.64587 * 22 21 20 40 40 H 1.09008 * 110.48127 * 142.29107 * 23 22 21 41 41 H 1.08999 * 110.49158 * 264.80161 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1041 1.6964 -1.2124 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0380 -1.2322 -0.3308 9 7 1.3916 -2.3501 0.4179 10 6 0.4662 -2.3115 1.5529 11 6 1.2390 -2.5595 2.8497 12 7 0.3135 -2.5216 3.9847 13 6 0.0362 -1.3971 4.6562 14 8 0.5019 -0.3037 4.4173 15 6 -0.9529 -1.7067 5.7587 16 6 -1.1943 -3.2229 5.6125 17 6 -0.3204 -3.6097 4.4393 18 8 -0.2119 -4.7275 3.9830 19 6 1.6553 -3.6166 -0.2696 20 6 1.5169 -3.4525 -1.8043 21 6 2.3771 -4.5939 -2.3850 22 6 3.4069 -4.9638 -1.3030 23 6 3.1376 -4.0338 -0.1020 24 1 -0.4849 0.8401 0.0004 25 1 -0.0138 -1.3339 1.5973 26 1 -0.2930 -3.0838 1.4290 27 1 1.7190 -3.5372 2.8054 28 1 1.9983 -1.7874 2.9737 29 1 -1.8812 -1.1546 5.6119 30 1 -0.5226 -1.4790 6.7338 31 1 -2.2426 -3.4251 5.3930 32 1 -0.8815 -3.7498 6.5139 33 1 0.9901 -4.3987 0.0962 34 1 1.9042 -2.4841 -2.1208 35 1 0.4764 -3.5662 -2.1086 36 1 2.8878 -4.2551 -3.2863 37 1 1.7495 -5.4554 -2.6132 38 1 3.2785 -6.0045 -1.0056 39 1 4.4174 -4.8052 -1.6796 40 1 3.2789 -4.5713 0.8358 41 1 3.7887 -3.1606 -0.1421 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000151126059.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:21:57 Heat of formation + Delta-G solvation = -75.173030 kcal Electronic energy + Delta-G solvation = -23010.751175 eV Core-core repulsion = 19697.135697 eV Total energy + Delta-G solvation = -3313.615478 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.73615 -39.55920 -39.35588 -37.00130 -36.39806 -34.40949 -32.92018 -29.98889 -29.37474 -28.06255 -27.04065 -25.94985 -23.25393 -23.19066 -21.19511 -20.92802 -20.31857 -18.55358 -18.04692 -17.70492 -17.43037 -17.12886 -16.48482 -16.06066 -15.71286 -15.22534 -15.10181 -14.91508 -14.70156 -14.59717 -14.19589 -14.09269 -13.73045 -13.46343 -13.05161 -12.88224 -12.73659 -12.58533 -12.22960 -12.06486 -11.97264 -11.85966 -11.81526 -11.66120 -11.56904 -11.19932 -11.14338 -10.99901 -10.77259 -10.51946 -8.57339 -7.86448 -5.50006 0.55941 1.38779 1.45144 1.48523 1.63358 1.84298 2.46422 3.21800 3.28798 3.32244 3.55000 3.70610 3.96718 3.99167 4.07926 4.20186 4.24036 4.41463 4.52421 4.57197 4.63005 4.74635 4.76487 4.87720 4.89446 4.93787 4.94066 4.96856 5.01067 5.15088 5.21506 5.27126 5.51598 5.55065 5.60741 5.64868 5.72170 5.98308 6.43737 6.44249 6.82289 7.12729 7.80778 8.34358 9.09184 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.013311 B = 0.007335 C = 0.005145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.998750 B = 3816.510085 C = 5441.335595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.029 4.029 3 Si 0.948 3.052 4 H -0.270 1.270 5 H -0.294 1.294 6 H -0.286 1.286 7 C -0.255 4.255 8 H 0.059 0.941 9 N -0.584 5.584 10 C 0.150 3.850 11 C 0.095 3.905 12 N -0.578 5.578 13 C 0.507 3.493 14 O -0.531 6.531 15 C -0.137 4.137 16 C -0.134 4.134 17 C 0.514 3.486 18 O -0.528 6.528 19 C 0.159 3.841 20 C -0.123 4.123 21 C -0.114 4.114 22 C -0.112 4.112 23 C -0.130 4.130 24 H 0.249 0.751 25 H 0.065 0.935 26 H 0.018 0.982 27 H 0.075 0.925 28 H 0.063 0.937 29 H 0.142 0.858 30 H 0.152 0.848 31 H 0.146 0.854 32 H 0.155 0.845 33 H 0.052 0.948 34 H 0.049 0.951 35 H 0.038 0.962 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.054 0.946 41 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.808 -8.479 10.492 13.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.227 4.227 3 Si 0.776 3.224 4 H -0.195 1.195 5 H -0.220 1.220 6 H -0.212 1.212 7 C -0.385 4.385 8 H 0.076 0.924 9 N -0.303 5.303 10 C 0.022 3.978 11 C -0.029 4.029 12 N -0.321 5.321 13 C 0.299 3.701 14 O -0.405 6.405 15 C -0.176 4.176 16 C -0.173 4.173 17 C 0.306 3.694 18 O -0.403 6.403 19 C 0.053 3.947 20 C -0.163 4.163 21 C -0.152 4.152 22 C -0.150 4.150 23 C -0.170 4.170 24 H 0.058 0.942 25 H 0.083 0.917 26 H 0.037 0.963 27 H 0.093 0.907 28 H 0.081 0.919 29 H 0.160 0.840 30 H 0.170 0.830 31 H 0.164 0.836 32 H 0.173 0.827 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.057 0.943 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.087 0.913 40 H 0.073 0.927 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.610 -8.356 10.069 13.183 hybrid contribution 0.521 1.279 -0.501 1.469 sum -1.090 -7.077 9.568 11.950 Atomic orbital electron populations 1.70090 1.06737 1.25856 1.52926 1.25788 0.95587 1.01254 1.00057 0.85653 0.78169 0.80372 0.78191 1.19503 1.22024 1.21243 1.18962 0.93734 0.85982 1.39822 0.92373 1.43834 1.51475 1.04300 1.30690 1.20888 0.91190 1.00579 0.85143 1.22295 0.92715 1.01769 0.86112 1.47126 1.41998 1.12379 1.30569 1.22047 0.81953 0.82300 0.83809 1.90779 1.54751 1.25213 1.69791 1.22596 0.99806 0.96910 0.98255 1.22598 1.02330 0.95576 0.96818 1.21907 0.79524 0.82709 0.85234 1.90723 1.64006 1.22468 1.63073 1.21655 0.94597 0.86908 0.91557 1.22534 0.98240 0.98645 0.96854 1.22038 0.97351 0.97621 0.98169 1.22018 0.99049 0.99162 0.94762 1.22675 0.97863 0.98541 0.97906 0.94170 0.91689 0.96320 0.90651 0.91871 0.84049 0.83029 0.83636 0.82738 0.92935 0.93256 0.94326 0.91612 0.91032 0.90740 0.91284 0.92738 0.93218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.86 11.47 21.65 0.25 -54.61 16 2 C -0.03 -1.66 4.97 84.86 0.42 -1.24 16 3 Si 0.95 46.90 29.60 68.60 2.03 48.93 16 4 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 5 H -0.29 -14.62 7.11 99.48 0.71 -13.91 16 6 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 7 C -0.25 -14.09 7.67 84.03 0.64 -13.45 16 8 H 0.06 3.22 6.97 -2.91 -0.02 3.20 16 9 N -0.58 -29.70 2.48 -670.75 -1.66 -31.37 16 10 C 0.15 7.46 5.62 86.38 0.49 7.94 16 11 C 0.10 4.09 5.88 86.38 0.51 4.60 16 12 N -0.58 -20.05 2.55 -756.67 -1.93 -21.98 16 13 C 0.51 16.30 8.08 87.99 0.71 17.01 16 14 O -0.53 -22.81 17.47 -2.86 -0.05 -22.86 16 15 C -0.14 -2.07 7.03 30.46 0.21 -1.86 16 16 C -0.13 -1.81 7.03 30.46 0.21 -1.60 16 17 C 0.51 14.75 8.08 87.99 0.71 15.46 16 18 O -0.53 -18.93 17.48 -2.86 -0.05 -18.98 16 19 C 0.16 6.92 3.43 46.31 0.16 7.08 16 20 C -0.12 -5.12 6.32 31.70 0.20 -4.92 16 21 C -0.11 -3.55 6.80 31.32 0.21 -3.34 16 22 C -0.11 -3.32 6.80 31.32 0.21 -3.11 16 23 C -0.13 -4.86 6.41 31.67 0.20 -4.66 16 24 H 0.25 14.68 8.31 -92.71 -0.77 13.90 16 25 H 0.07 3.74 5.54 -2.39 -0.01 3.72 16 26 H 0.02 0.92 7.90 -2.39 -0.02 0.90 16 27 H 0.08 3.15 7.83 -2.39 -0.02 3.13 16 28 H 0.06 3.00 7.82 -2.39 -0.02 2.98 16 29 H 0.14 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.15 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.15 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.15 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.05 2.26 7.83 -2.39 -0.02 2.24 16 34 H 0.05 2.33 6.98 -2.39 -0.02 2.31 16 35 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 38 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 40 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 41 H 0.05 2.04 6.87 -2.39 -0.02 2.02 16 Total: -1.00 -76.20 333.97 4.49 -71.71 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: 1.01 Total: 11.23 kcal Atomic # 6 Polarization: 13.03 SS G_CDS: 4.90 Total: 17.93 kcal Atomic # 7 Polarization: -104.61 SS G_CDS: -3.35 Total: -107.96 kcal Atomic # 8 Polarization: -41.74 SS G_CDS: -0.10 Total: -41.84 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 2.03 Total: 48.93 kcal Total: -76.20 4.49 -71.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000151126059.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.468 kcal (2) G-P(sol) polarization free energy of solvation -76.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds