Wall clock time and date at job start Tue Mar 31 2020 01:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81401 * 103.00025 * 2 1 4 4 C 1.53001 * 109.47188 * 180.02562 * 3 2 1 5 5 C 1.52995 * 109.47282 * 179.97438 * 4 3 2 6 6 N 1.46896 * 109.47491 * 179.30071 * 5 4 3 7 7 C 1.46901 * 111.00030 * 287.82084 * 6 5 4 8 8 C 1.50696 * 109.46937 * 298.76469 * 7 6 5 9 9 H 1.07994 * 120.00342 * 4.71519 * 8 7 6 10 10 C 1.37884 * 119.99385 * 184.71741 * 8 7 6 11 11 N 1.31506 * 120.00413 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 119.99399 * 179.97438 * 10 8 7 13 13 H 1.48494 * 109.47345 * 359.97438 * 12 10 8 14 14 H 1.48498 * 109.46870 * 120.00261 * 12 10 8 15 15 H 1.48500 * 109.46803 * 239.99822 * 12 10 8 16 16 C 1.46893 * 111.00366 * 163.86606 * 6 5 4 17 17 C 1.50705 * 109.47361 * 190.00172 * 16 6 5 18 18 C 1.38223 * 119.61553 * 95.01984 * 17 16 6 19 19 C 1.38635 * 119.15571 * 179.97438 * 18 17 16 20 20 C 1.38663 * 118.42389 * 0.02562 * 19 18 17 21 21 C 1.38180 * 119.16425 * 359.97438 * 20 19 18 22 22 N 1.31853 * 119.61941 * 274.99975 * 17 16 6 23 23 H 1.09000 * 109.47656 * 300.00439 * 1 2 3 24 24 H 1.09002 * 109.47011 * 60.00325 * 1 2 3 25 25 H 1.09000 * 109.47685 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47323 * 59.99341 * 3 2 1 27 27 H 1.09001 * 109.46970 * 299.99763 * 3 2 1 28 28 H 1.08999 * 109.47123 * 59.99378 * 4 3 2 29 29 H 1.09001 * 109.46857 * 299.99692 * 4 3 2 30 30 H 1.09008 * 109.47036 * 59.29945 * 5 4 3 31 31 H 1.09004 * 109.47117 * 299.30073 * 5 4 3 32 32 H 1.09004 * 109.46850 * 58.76171 * 7 6 5 33 33 H 1.09004 * 109.47133 * 178.76092 * 7 6 5 34 34 H 0.97001 * 120.00403 * 180.02562 * 11 10 8 35 35 H 1.09001 * 109.47022 * 70.00275 * 16 6 5 36 36 H 1.09006 * 109.47378 * 310.00360 * 16 6 5 37 37 H 1.08003 * 120.42285 * 359.96138 * 18 17 16 38 38 H 1.08007 * 120.78252 * 180.02562 * 19 18 17 39 39 H 1.08005 * 120.42007 * 179.97438 * 20 19 18 40 40 H 1.08003 * 119.62279 * 180.27252 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7423 1.9400 -0.0006 5 6 4.0865 3.4307 -0.0013 6 7 5.5460 3.5963 0.0150 7 6 6.1013 3.2427 1.3282 8 6 5.5248 4.1553 2.3797 9 1 4.7605 4.8705 2.1138 10 6 5.9731 4.0772 3.6812 11 7 6.9042 3.2067 4.0049 12 14 5.2589 5.2090 4.9845 13 1 4.2355 6.0906 4.3676 14 1 4.6310 4.3954 6.0564 15 1 6.3431 6.0411 5.5654 16 6 5.9250 4.9635 -0.3660 17 6 7.4156 5.0312 -0.5771 18 6 7.9326 4.8842 -1.8505 19 6 9.3052 4.9487 -2.0339 20 6 10.1101 5.1590 -0.9245 21 6 9.5216 5.2969 0.3180 22 7 8.2116 5.2304 0.4551 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.8030 2.2372 0.8899 27 1 1.8031 2.2371 -0.8900 28 1 4.1608 1.4704 -0.8908 29 1 4.1616 1.4703 0.8892 30 1 3.6573 3.9031 0.8824 31 1 3.6778 3.8976 -0.8975 32 1 5.8462 2.2096 1.5643 33 1 7.1855 3.3532 1.3059 34 1 7.2193 3.1515 4.9206 35 1 5.6386 5.6542 0.4271 36 1 5.4145 5.2382 -1.2890 37 1 7.2755 4.7210 -2.6920 38 1 9.7373 4.8378 -3.0175 39 1 11.1836 5.2144 -1.0303 40 1 10.1412 5.4654 1.1865 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174838317.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:26:56 Heat of formation + Delta-G solvation = 35.642719 kcal Electronic energy + Delta-G solvation = -19621.673580 eV Core-core repulsion = 16755.616304 eV Total energy + Delta-G solvation = -2866.057276 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.130 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.69535 -37.03914 -33.30031 -32.40060 -31.87036 -30.77327 -28.96407 -27.09591 -26.35468 -24.06954 -22.96620 -22.51671 -20.90610 -19.56577 -16.55697 -16.16852 -16.09686 -15.63999 -15.31638 -14.95309 -14.64184 -14.52434 -13.88585 -13.66841 -13.41327 -13.31016 -12.91851 -12.82765 -12.52580 -12.25111 -11.78030 -11.57239 -11.37944 -11.04404 -10.85567 -10.70835 -10.65721 -10.23363 -10.04925 -9.89121 -9.77838 -9.51711 -9.32038 -8.67820 -8.52182 -8.25475 -7.55648 -7.15885 -5.88388 -3.93426 1.59335 1.78030 1.81476 2.74284 3.34052 3.41919 3.43664 4.27221 4.51925 4.85282 5.04538 5.09791 5.11753 5.17575 5.21790 5.28941 5.44399 5.45827 5.59482 5.60714 5.64117 5.77005 5.85088 5.96553 6.06033 6.17409 6.19760 6.31991 6.45937 6.57646 6.73115 6.76317 6.84563 7.18398 7.34322 7.69081 8.02663 8.09207 8.32605 8.40703 8.70126 9.12286 9.70443 11.18355 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.011850 B = 0.005543 C = 0.004061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2362.329623 B = 5050.458810 C = 6893.684596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 S -0.270 6.270 3 C -0.074 4.074 4 C -0.094 4.094 5 C 0.067 3.933 6 N -0.537 5.537 7 C 0.183 3.817 8 C -0.531 4.531 9 H 0.052 0.948 10 C 0.071 3.929 11 N -0.888 5.888 12 Si 0.882 3.118 13 H -0.276 1.276 14 H -0.287 1.287 15 H -0.285 1.285 16 C 0.105 3.895 17 C 0.156 3.844 18 C -0.166 4.166 19 C -0.086 4.086 20 C -0.190 4.190 21 C 0.100 3.900 22 N -0.443 5.443 23 H 0.074 0.926 24 H 0.072 0.928 25 H 0.096 0.904 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.025 0.975 33 H 0.048 0.952 34 H 0.258 0.742 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.128 0.872 38 H 0.125 0.875 39 H 0.125 0.875 40 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.911 0.633 -11.779 12.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.044 6.044 3 C -0.223 4.223 4 C -0.133 4.133 5 C -0.064 4.064 6 N -0.261 5.261 7 C 0.058 3.942 8 C -0.570 4.570 9 H 0.070 0.930 10 C -0.132 4.132 11 N -0.527 5.527 12 Si 0.711 3.289 13 H -0.201 1.201 14 H -0.213 1.213 15 H -0.211 1.211 16 C -0.023 4.023 17 C 0.018 3.982 18 C -0.186 4.186 19 C -0.112 4.112 20 C -0.210 4.210 21 C -0.058 4.058 22 N -0.151 5.151 23 H 0.093 0.907 24 H 0.091 0.909 25 H 0.115 0.885 26 H 0.099 0.901 27 H 0.094 0.906 28 H 0.087 0.913 29 H 0.099 0.901 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.043 0.957 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.146 0.854 38 H 0.143 0.857 39 H 0.143 0.857 40 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -3.332 -0.546 -11.143 11.644 hybrid contribution -1.046 2.030 0.691 2.386 sum -4.378 1.484 -10.452 11.429 Atomic orbital electron populations 1.23336 0.95185 1.06030 1.04593 1.86988 1.06227 1.13178 1.98049 1.23395 1.01798 0.92682 1.04436 1.21230 0.90354 0.97855 1.03848 1.21871 0.89832 0.94662 1.00002 1.62546 1.09125 1.20988 1.33474 1.19881 0.96861 0.95589 0.81872 1.21534 1.21589 1.19812 0.94082 0.92958 1.24826 0.94791 0.95198 0.98338 1.69945 1.28879 1.35429 1.18490 0.86708 0.78964 0.81047 0.82209 1.20116 1.21288 1.21105 1.20818 0.88608 0.92976 0.99923 1.21243 0.96511 0.92379 0.88106 1.21911 0.95612 1.02516 0.98609 1.21426 0.93749 0.97313 0.98725 1.22040 1.00600 1.03995 0.94344 1.22806 0.91509 0.95140 0.96375 1.67787 1.04505 1.09609 1.33212 0.90686 0.90862 0.88492 0.90078 0.90622 0.91305 0.90134 0.93047 0.93155 0.95740 0.93349 0.93212 0.91834 0.91631 0.85444 0.85720 0.85710 0.83441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.25 10.76 101.05 1.09 -0.16 16 2 S -0.27 -3.87 22.38 -107.50 -2.41 -6.28 16 3 C -0.07 -1.06 5.94 37.16 0.22 -0.84 16 4 C -0.09 -1.61 5.28 -26.73 -0.14 -1.75 16 5 C 0.07 1.21 4.80 -3.83 -0.02 1.19 16 6 N -0.54 -11.23 4.66 -237.52 -1.11 -12.34 16 7 C 0.18 4.70 4.71 -4.98 -0.02 4.68 16 8 C -0.53 -14.45 7.33 -34.44 -0.25 -14.71 16 9 H 0.05 1.41 5.95 -52.49 -0.31 1.10 16 10 C 0.07 2.00 5.46 -17.82 -0.10 1.91 16 11 N -0.89 -26.52 13.29 55.43 0.74 -25.79 16 12 Si 0.88 21.86 29.54 -169.99 -5.02 16.84 16 13 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 14 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 15 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 16 C 0.11 2.03 5.09 -4.98 -0.03 2.01 16 17 C 0.16 3.00 5.70 -82.59 -0.47 2.52 16 18 C -0.17 -2.61 9.72 -39.44 -0.38 -2.99 16 19 C -0.09 -1.19 10.18 -39.28 -0.40 -1.59 16 20 C -0.19 -2.72 10.11 -39.45 -0.40 -3.12 16 21 C 0.10 1.75 11.18 -17.55 -0.20 1.56 16 22 N -0.44 -9.38 8.78 -9.47 -0.08 -9.47 16 23 H 0.07 0.73 8.14 -51.92 -0.42 0.30 16 24 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 25 H 0.10 0.86 8.14 -51.92 -0.42 0.43 16 26 H 0.08 1.17 8.14 -51.92 -0.42 0.75 16 27 H 0.08 0.94 8.14 -51.92 -0.42 0.52 16 28 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 29 H 0.08 1.63 6.73 -51.93 -0.35 1.28 16 30 H 0.05 1.04 6.17 -51.92 -0.32 0.72 16 31 H 0.05 0.78 7.81 -51.93 -0.41 0.38 16 32 H 0.02 0.68 6.66 -51.93 -0.35 0.34 16 33 H 0.05 1.37 6.19 -51.93 -0.32 1.05 16 34 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 35 H 0.06 1.38 6.57 -51.93 -0.34 1.04 16 36 H 0.07 1.05 7.76 -51.93 -0.40 0.64 16 37 H 0.13 1.69 8.06 -52.48 -0.42 1.27 16 38 H 0.12 1.31 8.06 -52.48 -0.42 0.89 16 39 H 0.12 1.39 8.06 -52.48 -0.42 0.96 16 40 H 0.15 2.33 8.06 -52.48 -0.42 1.91 16 LS Contribution 339.45 15.07 5.12 5.12 Total: -1.00 -31.28 339.45 -10.02 -41.31 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -6.16 Total: 1.90 kcal Atomic # 6 Polarization: -10.20 SS G_CDS: -1.10 Total: -11.30 kcal Atomic # 7 Polarization: -47.14 SS G_CDS: -0.45 Total: -47.59 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Atomic # 16 Polarization: -3.87 SS G_CDS: -2.41 Total: -6.28 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.28 -10.02 -41.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174838317.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.950 kcal (2) G-P(sol) polarization free energy of solvation -31.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds