Wall clock time and date at job start Tue Mar 31 2020 01:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81401 * 103.00025 * 2 1 4 4 C 1.53001 * 109.47188 * 180.02562 * 3 2 1 5 5 C 1.52995 * 109.47282 * 179.97438 * 4 3 2 6 6 N 1.46896 * 109.47491 * 179.30071 * 5 4 3 7 7 C 1.46901 * 111.00030 * 287.82084 * 6 5 4 8 8 C 1.50696 * 109.46937 * 298.76469 * 7 6 5 9 9 H 1.07994 * 120.00342 * 4.71519 * 8 7 6 10 10 C 1.37884 * 119.99385 * 184.71741 * 8 7 6 11 11 N 1.31506 * 120.00413 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 119.99399 * 179.97438 * 10 8 7 13 13 H 1.48494 * 109.47345 * 359.97438 * 12 10 8 14 14 H 1.48498 * 109.46870 * 120.00261 * 12 10 8 15 15 H 1.48500 * 109.46803 * 239.99822 * 12 10 8 16 16 C 1.46893 * 111.00366 * 163.86606 * 6 5 4 17 17 C 1.50705 * 109.47361 * 190.00172 * 16 6 5 18 18 C 1.38223 * 119.61553 * 95.01984 * 17 16 6 19 19 C 1.38635 * 119.15571 * 179.97438 * 18 17 16 20 20 C 1.38663 * 118.42389 * 0.02562 * 19 18 17 21 21 C 1.38180 * 119.16425 * 359.97438 * 20 19 18 22 22 N 1.31853 * 119.61941 * 274.99975 * 17 16 6 23 23 H 1.09000 * 109.47656 * 300.00439 * 1 2 3 24 24 H 1.09002 * 109.47011 * 60.00325 * 1 2 3 25 25 H 1.09000 * 109.47685 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47323 * 59.99341 * 3 2 1 27 27 H 1.09001 * 109.46970 * 299.99763 * 3 2 1 28 28 H 1.08999 * 109.47123 * 59.99378 * 4 3 2 29 29 H 1.09001 * 109.46857 * 299.99692 * 4 3 2 30 30 H 1.09008 * 109.47036 * 59.29945 * 5 4 3 31 31 H 1.09004 * 109.47117 * 299.30073 * 5 4 3 32 32 H 1.09004 * 109.46850 * 58.76171 * 7 6 5 33 33 H 1.09004 * 109.47133 * 178.76092 * 7 6 5 34 34 H 0.97001 * 120.00403 * 180.02562 * 11 10 8 35 35 H 1.09001 * 109.47022 * 70.00275 * 16 6 5 36 36 H 1.09006 * 109.47378 * 310.00360 * 16 6 5 37 37 H 1.08003 * 120.42285 * 359.96138 * 18 17 16 38 38 H 1.08007 * 120.78252 * 180.02562 * 19 18 17 39 39 H 1.08005 * 120.42007 * 179.97438 * 20 19 18 40 40 H 1.08003 * 119.62279 * 180.27252 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7423 1.9400 -0.0006 5 6 4.0865 3.4307 -0.0013 6 7 5.5460 3.5963 0.0150 7 6 6.1013 3.2427 1.3282 8 6 5.5248 4.1553 2.3797 9 1 4.7605 4.8705 2.1138 10 6 5.9731 4.0772 3.6812 11 7 6.9042 3.2067 4.0049 12 14 5.2589 5.2090 4.9845 13 1 4.2355 6.0906 4.3676 14 1 4.6310 4.3954 6.0564 15 1 6.3431 6.0411 5.5654 16 6 5.9250 4.9635 -0.3660 17 6 7.4156 5.0312 -0.5771 18 6 7.9326 4.8842 -1.8505 19 6 9.3052 4.9487 -2.0339 20 6 10.1101 5.1590 -0.9245 21 6 9.5216 5.2969 0.3180 22 7 8.2116 5.2304 0.4551 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.8030 2.2372 0.8899 27 1 1.8031 2.2371 -0.8900 28 1 4.1608 1.4704 -0.8908 29 1 4.1616 1.4703 0.8892 30 1 3.6573 3.9031 0.8824 31 1 3.6778 3.8976 -0.8975 32 1 5.8462 2.2096 1.5643 33 1 7.1855 3.3532 1.3059 34 1 7.2193 3.1515 4.9206 35 1 5.6386 5.6542 0.4271 36 1 5.4145 5.2382 -1.2890 37 1 7.2755 4.7210 -2.6920 38 1 9.7373 4.8378 -3.0175 39 1 11.1836 5.2144 -1.0303 40 1 10.1412 5.4654 1.1865 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174838317.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:26:55 Heat of formation + Delta-G solvation = 16.049960 kcal Electronic energy + Delta-G solvation = -19622.523186 eV Core-core repulsion = 16755.616304 eV Total energy + Delta-G solvation = -2866.906882 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.130 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.00448 -38.66519 -34.85506 -34.30919 -33.13186 -32.18712 -29.79926 -29.04733 -27.71402 -25.89911 -24.21876 -24.05326 -22.24202 -21.29108 -18.50467 -17.53480 -17.30971 -16.98046 -16.89156 -16.40682 -16.19045 -16.03400 -15.33957 -15.00951 -14.57069 -14.38737 -14.24342 -14.12104 -14.00265 -13.59741 -13.26736 -13.02373 -12.91827 -12.76495 -12.57913 -12.42073 -12.29154 -11.88261 -11.81141 -11.66182 -11.42570 -10.89258 -10.63512 -10.46924 -9.99933 -9.79853 -8.95799 -8.67830 -8.04833 -6.18345 0.33907 0.59335 0.76988 1.34389 1.36092 1.45797 1.73591 2.41971 2.93755 3.23150 3.49639 3.71425 3.96347 4.00432 4.13324 4.16872 4.35136 4.36013 4.37210 4.42027 4.44651 4.53712 4.63411 4.72938 4.81298 4.88047 4.89499 4.95972 5.07946 5.23869 5.32790 5.37768 5.39766 5.41440 5.52822 5.87888 5.99534 6.14133 6.30181 6.58155 6.98430 7.40492 7.49197 8.99579 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.011850 B = 0.005543 C = 0.004061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2362.329623 B = 5050.458810 C = 6893.684596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 S -0.329 6.329 3 C -0.060 4.060 4 C -0.083 4.083 5 C 0.068 3.932 6 N -0.535 5.535 7 C 0.205 3.795 8 C -0.526 4.526 9 H 0.052 0.948 10 C 0.015 3.985 11 N -0.927 5.927 12 Si 0.945 3.055 13 H -0.267 1.267 14 H -0.281 1.281 15 H -0.285 1.285 16 C 0.108 3.892 17 C 0.121 3.879 18 C -0.161 4.161 19 C -0.079 4.079 20 C -0.175 4.175 21 C 0.069 3.931 22 N -0.500 5.500 23 H 0.081 0.919 24 H 0.091 0.909 25 H 0.112 0.888 26 H 0.077 0.923 27 H 0.104 0.896 28 H 0.071 0.929 29 H 0.037 0.963 30 H 0.028 0.972 31 H 0.089 0.911 32 H -0.009 1.009 33 H 0.019 0.981 34 H 0.258 0.742 35 H 0.030 0.970 36 H 0.105 0.895 37 H 0.156 0.844 38 H 0.170 0.830 39 H 0.163 0.837 40 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.885 1.455 -14.313 15.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.274 4.274 2 S -0.104 6.104 3 C -0.209 4.209 4 C -0.122 4.122 5 C -0.062 4.062 6 N -0.259 5.259 7 C 0.079 3.921 8 C -0.565 4.565 9 H 0.070 0.930 10 C -0.183 4.183 11 N -0.568 5.568 12 Si 0.772 3.228 13 H -0.191 1.191 14 H -0.207 1.207 15 H -0.211 1.211 16 C -0.020 4.020 17 C -0.017 4.017 18 C -0.181 4.181 19 C -0.105 4.105 20 C -0.194 4.194 21 C -0.088 4.088 22 N -0.210 5.210 23 H 0.100 0.900 24 H 0.110 0.890 25 H 0.130 0.870 26 H 0.095 0.905 27 H 0.122 0.878 28 H 0.090 0.910 29 H 0.056 0.944 30 H 0.046 0.954 31 H 0.108 0.892 32 H 0.009 0.991 33 H 0.037 0.963 34 H 0.067 0.933 35 H 0.048 0.952 36 H 0.123 0.877 37 H 0.174 0.826 38 H 0.188 0.812 39 H 0.180 0.820 40 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -4.322 0.288 -13.693 14.362 hybrid contribution -0.721 1.752 1.383 2.346 sum -5.042 2.041 -12.310 13.459 Atomic orbital electron populations 1.23398 0.90681 1.07459 1.05842 1.87196 1.11224 1.13731 1.98214 1.23231 0.99395 0.92645 1.05580 1.21058 0.92587 0.96753 1.01813 1.21956 0.88082 0.95442 1.00708 1.62450 1.10699 1.22516 1.30211 1.19376 0.95185 0.93429 0.84158 1.21762 1.20877 1.19308 0.94531 0.93000 1.25626 0.95318 0.96733 1.00668 1.70080 1.30508 1.37304 1.18880 0.85706 0.78316 0.79216 0.79593 1.19090 1.20709 1.21098 1.20894 0.89956 0.90776 1.00388 1.21329 0.96141 0.94797 0.89432 1.22197 0.97167 1.01039 0.97737 1.21959 0.92900 0.95216 1.00442 1.22401 1.02579 1.01453 0.93013 1.23034 0.90788 0.96677 0.98333 1.67607 1.06432 1.11612 1.35342 0.90039 0.88961 0.86968 0.90463 0.87769 0.91040 0.94415 0.95360 0.89224 0.99105 0.96310 0.93297 0.95180 0.87662 0.82619 0.81224 0.81985 0.83392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.89 10.76 113.37 1.22 -0.67 16 2 S -0.33 -9.21 22.38 -56.49 -1.26 -10.47 16 3 C -0.06 -1.66 5.94 71.98 0.43 -1.23 16 4 C -0.08 -2.89 5.28 30.59 0.16 -2.73 16 5 C 0.07 2.45 4.80 86.30 0.41 2.87 16 6 N -0.54 -22.77 4.66 -905.36 -4.22 -26.99 16 7 C 0.21 11.10 4.71 85.56 0.40 11.51 16 8 C -0.53 -29.81 7.33 25.60 0.19 -29.63 16 9 H 0.05 2.89 5.95 -2.91 -0.02 2.88 16 10 C 0.01 0.88 5.46 84.66 0.46 1.34 16 11 N -0.93 -57.86 13.29 21.45 0.28 -57.57 16 12 Si 0.95 46.16 29.54 68.60 2.03 48.19 16 13 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 14 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 15 H -0.28 -13.83 7.11 99.48 0.71 -13.12 16 16 C 0.11 4.18 5.09 85.56 0.44 4.61 16 17 C 0.12 4.64 5.70 42.55 0.24 4.89 16 18 C -0.16 -4.67 9.72 22.36 0.22 -4.46 16 19 C -0.08 -1.92 10.18 22.47 0.23 -1.69 16 20 C -0.17 -4.63 10.11 22.36 0.23 -4.40 16 21 C 0.07 2.47 11.18 84.67 0.95 3.41 16 22 N -0.50 -22.00 8.78 -183.89 -1.61 -23.61 16 23 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 24 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 27 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 28 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 29 H 0.04 1.62 6.73 -2.39 -0.02 1.60 16 30 H 0.03 1.16 6.17 -2.38 -0.01 1.14 16 31 H 0.09 2.55 7.81 -2.39 -0.02 2.53 16 32 H -0.01 -0.54 6.66 -2.39 -0.02 -0.56 16 33 H 0.02 1.13 6.19 -2.39 -0.01 1.12 16 34 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 35 H 0.03 1.35 6.57 -2.39 -0.02 1.33 16 36 H 0.11 3.13 7.76 -2.38 -0.02 3.11 16 37 H 0.16 3.52 8.06 -2.91 -0.02 3.49 16 38 H 0.17 2.59 8.06 -2.91 -0.02 2.56 16 39 H 0.16 3.00 8.06 -2.91 -0.02 2.98 16 40 H 0.15 4.93 8.06 -2.91 -0.02 4.91 16 Total: -1.00 -73.22 339.45 1.80 -71.42 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: 1.01 Total: 15.20 kcal Atomic # 6 Polarization: -21.74 SS G_CDS: 5.57 Total: -16.16 kcal Atomic # 7 Polarization: -102.63 SS G_CDS: -5.55 Total: -108.18 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Atomic # 16 Polarization: -9.21 SS G_CDS: -1.26 Total: -10.47 kcal Total: -73.22 1.80 -71.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174838317.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.473 kcal (2) G-P(sol) polarization free energy of solvation -73.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds