Wall clock time and date at job start Tue Mar 31 2020 01:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46897 * 110.99814 * 2 1 4 4 C 1.53001 * 109.47528 * 293.95568 * 3 2 1 5 5 N 1.46494 * 109.47201 * 180.02562 * 4 3 2 6 6 C 1.34782 * 119.99530 * 179.97438 * 5 4 3 7 7 O 1.21685 * 120.00109 * 359.97438 * 6 5 4 8 8 C 1.46376 * 119.99789 * 180.02562 * 6 5 4 9 9 H 1.08009 * 120.00129 * 359.97438 * 8 6 5 10 10 C 1.40044 * 120.00021 * 180.02562 * 8 6 5 11 11 N 1.30671 * 120.00152 * 359.97438 * 10 8 6 12 12 Si 1.86807 * 120.00106 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.47081 * 89.99750 * 12 10 8 14 14 H 1.48493 * 109.47115 * 209.99737 * 12 10 8 15 15 H 1.48499 * 109.47060 * 330.00086 * 12 10 8 16 16 C 1.46905 * 110.99995 * 123.95456 * 2 1 3 17 17 C 1.50695 * 109.46944 * 66.04457 * 16 2 1 18 18 C 1.38238 * 119.97726 * 269.72330 * 17 16 2 19 19 C 1.38199 * 120.02708 * 179.72593 * 18 17 16 20 20 C 1.38465 * 119.97288 * 0.57577 * 19 18 17 21 21 F 1.35102 * 120.02543 * 179.67928 * 20 19 18 22 22 C 1.38462 * 119.94590 * 359.70089 * 20 19 18 23 23 C 1.38195 * 119.97626 * 0.02562 * 22 20 19 24 24 H 1.08992 * 109.47459 * 59.99744 * 1 2 3 25 25 H 1.09004 * 109.47040 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47033 * 299.99847 * 1 2 3 27 27 H 1.09009 * 109.47296 * 53.95365 * 3 2 1 28 28 H 1.09002 * 109.47055 * 173.95064 * 3 2 1 29 29 H 1.09001 * 109.46792 * 299.99900 * 4 3 2 30 30 H 1.09001 * 109.46841 * 59.99659 * 4 3 2 31 31 H 0.97001 * 120.00339 * 0.02562 * 5 4 3 32 32 H 0.96995 * 120.00017 * 180.02562 * 11 10 8 33 33 H 1.09002 * 109.46783 * 186.04686 * 16 2 1 34 34 H 1.09002 * 109.46955 * 306.04307 * 16 2 1 35 35 H 1.08001 * 119.98487 * 359.97438 * 18 17 16 36 36 H 1.08000 * 120.01905 * 180.25287 * 19 18 17 37 37 H 1.07998 * 120.00657 * 179.97438 * 22 20 19 38 38 H 1.07992 * 119.98776 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0575 -1.3182 5 7 2.1569 3.4250 -1.3184 6 6 1.9565 4.2237 -2.3854 7 8 1.3394 3.8088 -3.3486 8 6 2.4820 5.5899 -2.3858 9 1 3.0301 5.9580 -1.5310 10 6 2.2733 6.4200 -3.4942 11 7 1.6098 5.9749 -4.5282 12 14 2.9434 8.1638 -3.4945 13 1 4.3151 8.1668 -4.0632 14 1 2.0641 9.0318 -4.3183 15 1 2.9836 8.6789 -2.1023 16 6 1.9955 -0.7660 1.1376 17 6 1.6370 -2.2204 0.9729 18 6 0.4537 -2.7040 1.4991 19 6 0.1211 -4.0363 1.3437 20 6 0.9794 -4.8896 0.6709 21 9 0.6584 -6.1937 0.5240 22 6 2.1670 -4.4053 0.1492 23 6 2.4947 -3.0713 0.3009 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.5611 1.9274 0.8310 28 1 3.0797 1.3444 0.1083 29 1 2.0658 1.5016 -2.1491 30 1 0.5471 2.0845 -1.4264 31 1 2.6498 3.7553 -0.5510 32 1 1.4656 6.5498 -5.2960 33 1 3.0798 -0.6611 1.1756 34 1 1.5612 -0.3872 2.0628 35 1 -0.2131 -2.0394 2.0285 36 1 -0.8053 -4.4131 1.7514 37 1 2.8373 -5.0700 -0.3755 38 1 3.4207 -2.6933 -0.1063 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187699122.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:21:13 Heat of formation + Delta-G solvation = -56.208521 kcal Electronic energy + Delta-G solvation = -20580.616462 eV Core-core repulsion = 17144.363041 eV Total energy + Delta-G solvation = -3436.253421 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.11052 -39.68259 -37.78141 -36.74112 -33.45167 -32.33075 -31.44788 -31.33758 -28.41750 -27.27869 -26.05530 -23.88643 -23.24823 -21.52880 -20.82068 -19.66333 -17.88798 -17.18627 -16.64745 -15.99074 -15.92486 -15.68180 -15.40032 -15.19211 -14.51529 -14.07648 -14.00425 -13.82291 -13.69556 -13.48258 -13.33212 -12.43013 -12.28610 -12.18644 -11.98628 -11.81857 -11.48904 -11.22455 -11.14528 -11.09153 -10.93377 -10.54620 -10.43392 -10.21195 -9.34281 -8.87429 -8.84073 -8.34891 -7.60518 -7.47940 -6.17358 -4.62930 0.86379 0.98690 3.14678 3.21060 3.23978 3.25722 3.93966 4.02040 4.14962 4.43736 4.52009 4.60790 4.64960 4.88437 5.00596 5.08715 5.17240 5.29105 5.32151 5.42512 5.58247 5.60161 5.68251 5.75745 5.77891 5.84473 5.86384 5.97730 6.03015 6.28557 6.52151 6.59140 6.63785 6.99762 7.03584 7.44379 7.94044 8.11512 8.33796 9.03575 9.55004 10.61769 10.80431 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.048808 B = 0.002501 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.544344 B =11194.604662 C =11298.089086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.533 5.533 3 C 0.048 3.952 4 C 0.137 3.863 5 N -0.769 5.769 6 C 0.555 3.445 7 O -0.580 6.580 8 C -0.546 4.546 9 H 0.067 0.933 10 C 0.087 3.913 11 N -0.769 5.769 12 Si 0.908 3.092 13 H -0.272 1.272 14 H -0.279 1.279 15 H -0.265 1.265 16 C 0.093 3.907 17 C -0.083 4.083 18 C -0.085 4.085 19 C -0.155 4.155 20 C 0.093 3.907 21 F -0.143 7.143 22 C -0.154 4.154 23 C -0.068 4.068 24 H 0.078 0.922 25 H 0.068 0.932 26 H 0.025 0.975 27 H 0.037 0.963 28 H 0.077 0.923 29 H 0.056 0.944 30 H 0.048 0.952 31 H 0.378 0.622 32 H 0.268 0.732 33 H 0.086 0.914 34 H 0.044 0.956 35 H 0.130 0.870 36 H 0.133 0.867 37 H 0.135 0.865 38 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.394 -16.991 14.209 22.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.257 5.257 3 C -0.080 4.080 4 C 0.012 3.988 5 N -0.425 5.425 6 C 0.359 3.641 7 O -0.463 6.463 8 C -0.583 4.583 9 H 0.085 0.915 10 C -0.133 4.133 11 N -0.397 5.397 12 Si 0.733 3.267 13 H -0.197 1.197 14 H -0.205 1.205 15 H -0.190 1.190 16 C -0.035 4.035 17 C -0.084 4.084 18 C -0.104 4.104 19 C -0.174 4.174 20 C 0.074 3.926 21 F -0.122 7.122 22 C -0.173 4.173 23 C -0.087 4.087 24 H 0.096 0.904 25 H 0.087 0.913 26 H 0.044 0.956 27 H 0.055 0.945 28 H 0.095 0.905 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.209 0.791 32 H 0.079 0.921 33 H 0.104 0.896 34 H 0.062 0.938 35 H 0.148 0.852 36 H 0.151 0.849 37 H 0.152 0.848 38 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -0.010 -17.536 12.855 21.743 hybrid contribution 0.167 1.091 1.063 1.532 sum 0.157 -16.446 13.918 21.546 Atomic orbital electron populations 1.22566 0.87178 1.02034 1.01458 1.61891 1.08356 1.13768 1.41683 1.22337 1.00194 0.87312 0.98125 1.20787 0.98382 0.84628 0.95037 1.46096 1.62374 1.12439 1.21612 1.18209 0.79914 0.85559 0.80444 1.90603 1.45014 1.75994 1.34652 1.20880 1.37695 0.96396 1.03319 0.91461 1.25713 0.93396 0.99488 0.94676 1.70022 1.29970 1.35695 1.04044 0.86374 0.79183 0.82275 0.78907 1.19741 1.20478 1.18957 1.21057 1.00839 0.89266 0.92321 1.19845 0.94726 0.95621 0.98198 1.20947 0.96189 0.94436 0.98795 1.21098 1.00436 0.93980 1.01903 1.17747 0.95598 0.78372 1.00905 1.91493 1.92865 1.33721 1.94093 1.21169 0.96505 0.97048 1.02567 1.20939 0.99781 0.91783 0.96159 0.90355 0.91293 0.95609 0.94514 0.90468 0.92560 0.93427 0.79050 0.92112 0.89577 0.93752 0.85238 0.84880 0.84754 0.84693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 8.98 60.07 0.54 0.73 16 2 N -0.53 -6.64 4.75 -244.36 -1.16 -7.80 16 3 C 0.05 0.67 5.07 -3.83 -0.02 0.65 16 4 C 0.14 2.63 5.60 -4.04 -0.02 2.61 16 5 N -0.77 -17.15 5.55 -61.72 -0.34 -17.49 16 6 C 0.56 15.94 7.75 -12.98 -0.10 15.84 16 7 O -0.58 -19.08 15.02 5.20 0.08 -19.00 16 8 C -0.55 -15.46 9.54 -35.63 -0.34 -15.80 16 9 H 0.07 1.73 7.85 -52.48 -0.41 1.32 16 10 C 0.09 2.44 5.50 -17.37 -0.10 2.34 16 11 N -0.77 -23.26 11.83 55.55 0.66 -22.60 16 12 Si 0.91 20.14 29.56 -169.99 -5.02 15.11 16 13 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 14 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 15 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 16 C 0.09 0.90 5.12 -4.98 -0.03 0.87 16 17 C -0.08 -0.79 4.88 -104.62 -0.51 -1.30 16 18 C -0.09 -0.74 7.91 -39.60 -0.31 -1.06 16 19 C -0.16 -1.39 10.03 -39.51 -0.40 -1.79 16 20 C 0.09 0.93 7.30 -39.42 -0.29 0.65 16 21 F -0.14 -1.54 17.27 2.25 0.04 -1.50 16 22 C -0.15 -1.43 10.03 -39.51 -0.40 -1.83 16 23 C -0.07 -0.63 9.70 -39.59 -0.38 -1.02 16 24 H 0.08 1.08 6.47 -51.93 -0.34 0.74 16 25 H 0.07 0.75 5.91 -51.93 -0.31 0.44 16 26 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.04 0.48 8.12 -51.92 -0.42 0.06 16 28 H 0.08 0.99 7.93 -51.93 -0.41 0.58 16 29 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 30 H 0.05 0.98 6.55 -51.93 -0.34 0.64 16 31 H 0.38 7.27 8.45 -40.82 -0.35 6.92 16 32 H 0.27 7.34 8.29 -40.82 -0.34 7.00 16 33 H 0.09 0.76 7.87 -51.93 -0.41 0.35 16 34 H 0.04 0.39 8.06 -51.93 -0.42 -0.03 16 35 H 0.13 0.93 8.00 -52.49 -0.42 0.51 16 36 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 37 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 38 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 326.68 15.07 4.92 4.92 Total: -1.00 -34.68 326.68 -8.25 -42.93 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -5.07 Total: 4.55 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: -2.35 Total: 0.89 kcal Atomic # 7 Polarization: -47.05 SS G_CDS: -0.85 Total: -47.90 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: 0.08 Total: -19.00 kcal Atomic # 9 Polarization: -1.54 SS G_CDS: 0.04 Total: -1.50 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -34.68 -8.25 -42.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187699122.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.280 kcal (2) G-P(sol) polarization free energy of solvation -34.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds