Wall clock time and date at job start Tue Mar 31 2020 01:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46897 * 110.99814 * 2 1 4 4 C 1.53001 * 109.47528 * 293.95568 * 3 2 1 5 5 N 1.46494 * 109.47201 * 180.02562 * 4 3 2 6 6 C 1.34782 * 119.99530 * 179.97438 * 5 4 3 7 7 O 1.21685 * 120.00109 * 359.97438 * 6 5 4 8 8 C 1.46376 * 119.99789 * 180.02562 * 6 5 4 9 9 H 1.08009 * 120.00129 * 359.97438 * 8 6 5 10 10 C 1.40044 * 120.00021 * 180.02562 * 8 6 5 11 11 N 1.30671 * 120.00152 * 359.97438 * 10 8 6 12 12 Si 1.86807 * 120.00106 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.47081 * 89.99750 * 12 10 8 14 14 H 1.48493 * 109.47115 * 209.99737 * 12 10 8 15 15 H 1.48499 * 109.47060 * 330.00086 * 12 10 8 16 16 C 1.46905 * 110.99995 * 123.95456 * 2 1 3 17 17 C 1.50695 * 109.46944 * 66.04457 * 16 2 1 18 18 C 1.38238 * 119.97726 * 269.72330 * 17 16 2 19 19 C 1.38199 * 120.02708 * 179.72593 * 18 17 16 20 20 C 1.38465 * 119.97288 * 0.57577 * 19 18 17 21 21 F 1.35102 * 120.02543 * 179.67928 * 20 19 18 22 22 C 1.38462 * 119.94590 * 359.70089 * 20 19 18 23 23 C 1.38195 * 119.97626 * 0.02562 * 22 20 19 24 24 H 1.08992 * 109.47459 * 59.99744 * 1 2 3 25 25 H 1.09004 * 109.47040 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47033 * 299.99847 * 1 2 3 27 27 H 1.09009 * 109.47296 * 53.95365 * 3 2 1 28 28 H 1.09002 * 109.47055 * 173.95064 * 3 2 1 29 29 H 1.09001 * 109.46792 * 299.99900 * 4 3 2 30 30 H 1.09001 * 109.46841 * 59.99659 * 4 3 2 31 31 H 0.97001 * 120.00339 * 0.02562 * 5 4 3 32 32 H 0.96995 * 120.00017 * 180.02562 * 11 10 8 33 33 H 1.09002 * 109.46783 * 186.04686 * 16 2 1 34 34 H 1.09002 * 109.46955 * 306.04307 * 16 2 1 35 35 H 1.08001 * 119.98487 * 359.97438 * 18 17 16 36 36 H 1.08000 * 120.01905 * 180.25287 * 19 18 17 37 37 H 1.07998 * 120.00657 * 179.97438 * 22 20 19 38 38 H 1.07992 * 119.98776 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0575 -1.3182 5 7 2.1569 3.4250 -1.3184 6 6 1.9565 4.2237 -2.3854 7 8 1.3394 3.8088 -3.3486 8 6 2.4820 5.5899 -2.3858 9 1 3.0301 5.9580 -1.5310 10 6 2.2733 6.4200 -3.4942 11 7 1.6098 5.9749 -4.5282 12 14 2.9434 8.1638 -3.4945 13 1 4.3151 8.1668 -4.0632 14 1 2.0641 9.0318 -4.3183 15 1 2.9836 8.6789 -2.1023 16 6 1.9955 -0.7660 1.1376 17 6 1.6370 -2.2204 0.9729 18 6 0.4537 -2.7040 1.4991 19 6 0.1211 -4.0363 1.3437 20 6 0.9794 -4.8896 0.6709 21 9 0.6584 -6.1937 0.5240 22 6 2.1670 -4.4053 0.1492 23 6 2.4947 -3.0713 0.3009 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.5611 1.9274 0.8310 28 1 3.0797 1.3444 0.1083 29 1 2.0658 1.5016 -2.1491 30 1 0.5471 2.0845 -1.4264 31 1 2.6498 3.7553 -0.5510 32 1 1.4656 6.5498 -5.2960 33 1 3.0798 -0.6611 1.1756 34 1 1.5612 -0.3872 2.0628 35 1 -0.2131 -2.0394 2.0285 36 1 -0.8053 -4.4131 1.7514 37 1 2.8373 -5.0700 -0.3755 38 1 3.4207 -2.6933 -0.1063 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187699122.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:21:12 Heat of formation + Delta-G solvation = -81.086510 kcal Electronic energy + Delta-G solvation = -20581.695252 eV Core-core repulsion = 17144.363041 eV Total energy + Delta-G solvation = -3437.332211 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.89328 -40.44989 -39.47685 -38.13254 -35.23539 -34.42955 -32.40025 -32.09623 -29.94464 -28.28495 -27.81928 -25.07596 -23.94979 -22.59591 -21.82162 -21.65689 -19.17492 -18.61858 -17.49709 -17.39017 -17.00668 -16.70801 -16.53888 -16.53022 -15.88533 -15.42961 -15.33451 -15.13119 -14.49515 -14.45561 -14.29569 -14.21318 -13.89303 -13.15716 -13.03370 -12.91885 -12.83549 -12.72950 -12.62462 -12.49670 -12.15005 -12.02291 -11.93952 -11.87640 -10.92270 -10.02588 -9.88729 -9.62910 -9.47348 -9.26856 -8.28322 -6.84827 0.13175 0.30697 1.41715 1.43494 1.58870 2.24943 2.46835 2.48317 2.92099 3.30960 3.51205 3.63176 3.76592 3.80006 3.97641 4.01454 4.16459 4.23716 4.35039 4.44212 4.52737 4.57418 4.69793 4.74816 4.97555 5.00895 5.03618 5.06172 5.09622 5.17987 5.28533 5.33171 5.57670 5.88063 5.92375 5.99653 6.08111 6.26477 6.28833 6.87625 7.57092 8.50524 8.68632 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.048808 B = 0.002501 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.544344 B =11194.604662 C =11298.089086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.547 5.547 3 C 0.066 3.934 4 C 0.141 3.859 5 N -0.754 5.754 6 C 0.536 3.464 7 O -0.635 6.635 8 C -0.572 4.572 9 H 0.091 0.909 10 C 0.026 3.974 11 N -0.824 5.824 12 Si 1.000 3.000 13 H -0.261 1.261 14 H -0.275 1.275 15 H -0.247 1.247 16 C 0.096 3.904 17 C -0.091 4.091 18 C -0.085 4.085 19 C -0.158 4.158 20 C 0.074 3.926 21 F -0.151 7.151 22 C -0.160 4.160 23 C -0.076 4.076 24 H 0.051 0.949 25 H 0.080 0.920 26 H 0.039 0.961 27 H 0.052 0.948 28 H 0.094 0.906 29 H 0.029 0.971 30 H 0.029 0.971 31 H 0.397 0.603 32 H 0.274 0.726 33 H 0.097 0.903 34 H 0.060 0.940 35 H 0.148 0.852 36 H 0.149 0.851 37 H 0.146 0.854 38 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.432 -16.078 16.325 22.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.272 5.272 3 C -0.062 4.062 4 C 0.016 3.984 5 N -0.410 5.410 6 C 0.340 3.660 7 O -0.522 6.522 8 C -0.608 4.608 9 H 0.109 0.891 10 C -0.189 4.189 11 N -0.454 5.454 12 Si 0.820 3.180 13 H -0.186 1.186 14 H -0.200 1.200 15 H -0.170 1.170 16 C -0.031 4.031 17 C -0.092 4.092 18 C -0.104 4.104 19 C -0.176 4.176 20 C 0.055 3.945 21 F -0.130 7.130 22 C -0.179 4.179 23 C -0.094 4.094 24 H 0.069 0.931 25 H 0.098 0.902 26 H 0.058 0.942 27 H 0.070 0.930 28 H 0.112 0.888 29 H 0.048 0.952 30 H 0.047 0.953 31 H 0.231 0.769 32 H 0.084 0.916 33 H 0.116 0.884 34 H 0.078 0.922 35 H 0.165 0.835 36 H 0.167 0.833 37 H 0.164 0.836 38 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 1.051 -16.659 15.046 22.472 hybrid contribution -0.180 0.700 0.425 0.838 sum 0.871 -15.959 15.471 22.244 Atomic orbital electron populations 1.22517 0.87125 1.02568 1.00780 1.61805 1.08596 1.12981 1.43771 1.22079 1.01299 0.87945 0.94855 1.20811 0.96886 0.83121 0.97574 1.45717 1.61526 1.13109 1.20612 1.18655 0.79580 0.86735 0.81028 1.90556 1.47393 1.77203 1.37065 1.21445 1.38099 0.96712 1.04594 0.89128 1.27031 0.93047 1.05163 0.93665 1.70200 1.31700 1.38268 1.05235 0.84983 0.78436 0.74774 0.79850 1.18597 1.19952 1.17010 1.21099 1.01547 0.88761 0.91664 1.19941 0.95149 0.95588 0.98534 1.21158 0.96142 0.94559 0.98507 1.21326 1.00843 0.94033 1.01446 1.18018 0.96358 0.78296 1.01832 1.91469 1.92980 1.34323 1.94258 1.21352 0.96587 0.97409 1.02535 1.21120 1.00293 0.91808 0.96181 0.93062 0.90153 0.94219 0.93027 0.88785 0.95247 0.95294 0.76927 0.91591 0.88424 0.92158 0.83465 0.83330 0.83644 0.83773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 8.98 127.69 1.15 1.56 16 2 N -0.55 -12.71 4.75 -927.02 -4.41 -17.12 16 3 C 0.07 1.72 5.07 86.30 0.44 2.15 16 4 C 0.14 5.50 5.60 86.38 0.48 5.98 16 5 N -0.75 -33.69 5.55 -467.41 -2.59 -36.29 16 6 C 0.54 31.46 7.75 86.36 0.67 32.13 16 7 O -0.63 -43.56 15.02 -4.30 -0.06 -43.63 16 8 C -0.57 -32.37 9.54 24.83 0.24 -32.13 16 9 H 0.09 4.53 7.85 -2.91 -0.02 4.50 16 10 C 0.03 1.44 5.50 85.30 0.47 1.91 16 11 N -0.82 -51.09 11.83 21.83 0.26 -50.83 16 12 Si 1.00 40.74 29.56 68.60 2.03 42.77 16 13 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 14 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 15 H -0.25 -9.24 7.11 99.48 0.71 -8.53 16 16 C 0.10 1.60 5.12 85.55 0.44 2.04 16 17 C -0.09 -1.56 4.88 -19.86 -0.10 -1.65 16 18 C -0.09 -1.31 7.91 22.26 0.18 -1.13 16 19 C -0.16 -2.59 10.03 22.31 0.22 -2.36 16 20 C 0.07 1.43 7.30 22.38 0.16 1.59 16 21 F -0.15 -3.21 17.27 44.97 0.78 -2.43 16 22 C -0.16 -2.83 10.03 22.31 0.22 -2.61 16 23 C -0.08 -1.30 9.70 22.26 0.22 -1.08 16 24 H 0.05 1.44 6.47 -2.39 -0.02 1.42 16 25 H 0.08 1.62 5.91 -2.38 -0.01 1.61 16 26 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.05 1.21 8.12 -2.38 -0.02 1.19 16 28 H 0.09 2.15 7.93 -2.39 -0.02 2.13 16 29 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.03 1.23 6.55 -2.39 -0.02 1.22 16 31 H 0.40 14.70 8.45 -92.71 -0.78 13.92 16 32 H 0.27 15.36 8.29 -92.71 -0.77 14.59 16 33 H 0.10 1.42 7.87 -2.39 -0.02 1.40 16 34 H 0.06 0.85 8.06 -2.39 -0.02 0.83 16 35 H 0.15 1.69 8.00 -2.91 -0.02 1.67 16 36 H 0.15 1.87 8.06 -2.91 -0.02 1.85 16 37 H 0.15 2.11 8.06 -2.91 -0.02 2.09 16 38 H 0.14 2.13 8.06 -2.91 -0.02 2.10 16 Total: -1.00 -77.75 326.68 1.08 -76.67 By element: Atomic # 1 Polarization: 24.17 SS G_CDS: 0.29 Total: 24.47 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: 4.79 Total: 6.39 kcal Atomic # 7 Polarization: -97.49 SS G_CDS: -6.74 Total: -104.24 kcal Atomic # 8 Polarization: -43.56 SS G_CDS: -0.06 Total: -43.63 kcal Atomic # 9 Polarization: -3.21 SS G_CDS: 0.78 Total: -2.43 kcal Atomic # 14 Polarization: 40.74 SS G_CDS: 2.03 Total: 42.77 kcal Total: -77.75 1.08 -76.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187699122.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.416 kcal (2) G-P(sol) polarization free energy of solvation -77.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds