Wall clock time and date at job start Tue Mar 31 2020 02:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31012 * 1 3 3 Si 1.86800 * 119.99772 * 2 1 4 4 H 1.48499 * 109.47082 * 239.99713 * 3 2 1 5 5 H 1.48495 * 109.47430 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47119 * 120.00007 * 3 2 1 7 7 C 1.39583 * 120.00309 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00200 * 231.22335 * 7 2 1 9 9 N 1.36124 * 119.99843 * 51.21837 * 7 2 1 10 10 C 1.34779 * 120.00126 * 84.05664 * 9 7 2 11 11 O 1.21508 * 119.99642 * 1.83099 * 10 9 7 12 12 C 1.48825 * 120.00176 * 181.83525 * 10 9 7 13 13 O 1.21445 * 119.99916 * 354.31849 * 12 10 9 14 14 N 1.34782 * 120.00158 * 174.32388 * 12 10 9 15 15 C 1.46493 * 120.00042 * 180.02562 * 14 12 10 16 16 C 1.52999 * 109.47176 * 180.02562 * 15 14 12 17 17 C 1.53000 * 117.49585 * 243.62118 * 16 15 14 18 18 C 1.53004 * 60.00093 * 252.50815 * 17 16 15 19 19 C 1.46500 * 120.00018 * 264.05855 * 9 7 2 20 20 C 1.54263 * 110.03289 * 357.27683 * 19 9 7 21 21 C 1.54970 * 104.15896 * 95.75844 * 20 19 9 22 22 C 1.54887 * 102.77587 * 37.88794 * 21 20 19 23 23 C 1.53871 * 110.03524 * 114.49987 * 19 9 7 24 24 H 0.96997 * 120.00723 * 312.91082 * 1 2 3 25 25 H 0.96995 * 119.99403 * 359.97438 * 14 12 10 26 26 H 1.09005 * 109.47263 * 299.99402 * 15 14 12 27 27 H 1.09003 * 109.47557 * 59.99104 * 15 14 12 28 28 H 1.08998 * 115.54803 * 29.32337 * 16 15 14 29 29 H 1.09006 * 117.50234 * 359.97438 * 17 16 15 30 30 H 1.08999 * 117.50120 * 145.01622 * 17 16 15 31 31 H 1.08995 * 117.49604 * 252.51317 * 18 17 16 32 32 H 1.08999 * 117.49933 * 107.48642 * 18 17 16 33 33 H 1.09000 * 110.01574 * 235.88974 * 19 9 7 34 34 H 1.08999 * 110.48708 * 214.40291 * 20 19 9 35 35 H 1.08999 * 110.49228 * 337.05165 * 20 19 9 36 36 H 1.09002 * 110.71963 * 279.57651 * 21 20 19 37 37 H 1.09002 * 110.92504 * 156.29735 * 21 20 19 38 38 H 1.09004 * 110.48342 * 203.40908 * 22 21 20 39 39 H 1.08993 * 110.60002 * 80.82087 * 22 21 20 40 40 H 1.09000 * 110.03071 * 359.94937 * 23 19 9 41 41 H 1.08991 * 110.03704 * 121.37975 * 23 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2441 1.6178 0.0000 4 1 3.0978 1.6964 -1.2125 5 1 1.2791 2.7465 -0.0006 6 1 3.0978 1.6965 1.2125 7 6 2.0081 -1.2088 0.0005 8 1 2.7854 -1.3832 0.7297 9 7 1.7090 -2.1678 -0.9180 10 6 2.2595 -2.1187 -2.1473 11 8 3.0484 -1.2373 -2.4248 12 6 1.9010 -3.1440 -3.1647 13 8 1.1941 -4.0826 -2.8579 14 7 2.3609 -3.0309 -4.4266 15 6 2.0076 -4.0398 -5.4282 16 6 2.6544 -3.6780 -6.7667 17 6 1.7231 -3.3570 -7.9374 18 6 2.5009 -4.6744 -7.9177 19 6 0.7886 -3.2533 -0.5705 20 6 0.3519 -3.1244 0.9034 21 6 -0.9988 -2.3679 0.8338 22 6 -1.6612 -2.9655 -0.4323 23 6 -0.4906 -3.1521 -1.4196 24 1 -0.4851 0.5719 0.6152 25 1 2.9253 -2.2810 -4.6716 26 1 2.3676 -5.0160 -5.1033 27 1 0.9243 -4.0724 -5.5446 28 1 3.5910 -3.1243 -6.7018 29 1 0.6495 -3.4039 -7.7541 30 1 2.0468 -2.5918 -8.6429 31 1 3.3365 -4.7758 -8.6102 32 1 1.9393 -5.5876 -7.7212 33 1 1.2700 -4.2175 -0.7342 34 1 0.2144 -4.1099 1.3482 35 1 1.0839 -2.5481 1.4693 36 1 -0.8352 -1.2967 0.7151 37 1 -1.6038 -2.5691 1.7179 38 1 -2.3978 -2.2733 -0.8404 39 1 -2.1256 -3.9251 -0.2055 40 1 -0.4270 -2.2947 -2.0897 41 1 -0.6300 -4.0669 -1.9954 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191864552.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:22:38 Heat of formation + Delta-G solvation = -5.467093 kcal Electronic energy + Delta-G solvation = -23179.687237 eV Core-core repulsion = 19869.094435 eV Total energy + Delta-G solvation = -3310.592802 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.94600 -38.17714 -37.15693 -36.54148 -33.90226 -33.22838 -31.90517 -27.67853 -27.43487 -26.49138 -25.24268 -22.60507 -22.43108 -20.97182 -19.88650 -19.28278 -18.98838 -17.53992 -16.33928 -16.26721 -15.44991 -15.05692 -14.94477 -14.48022 -14.28691 -13.96182 -13.93379 -13.42037 -13.19773 -12.65815 -12.39983 -12.09400 -11.69930 -11.51100 -11.44674 -11.37609 -10.92548 -10.75228 -10.61854 -10.42891 -10.33040 -10.18742 -9.95768 -9.74471 -9.66253 -9.50695 -9.13514 -8.82533 -8.65266 -8.22181 -6.99609 -5.68034 -4.16782 2.49722 3.04395 3.32033 3.35106 3.50588 3.67510 3.98322 4.41418 4.50572 4.54207 4.74918 4.78439 4.96709 5.18161 5.45649 5.51187 5.64945 5.72512 5.76822 5.87749 5.94208 5.96823 6.07931 6.16637 6.55504 6.66955 6.76184 6.80346 6.87400 7.00111 7.04541 7.20082 7.29141 7.45443 7.60595 7.71800 7.78396 8.21556 8.34003 8.47809 8.86207 9.02108 9.17601 9.95895 10.54434 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.018255 B = 0.005910 C = 0.004910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.426718 B = 4736.942241 C = 5701.329886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.127 3.873 3 Si 0.888 3.112 4 H -0.260 1.260 5 H -0.290 1.290 6 H -0.276 1.276 7 C -0.384 4.384 8 H 0.089 0.911 9 N -0.399 5.399 10 C 0.469 3.531 11 O -0.555 6.555 12 C 0.499 3.501 13 O -0.520 6.520 14 N -0.714 5.714 15 C 0.152 3.848 16 C -0.168 4.168 17 C -0.177 4.177 18 C -0.172 4.172 19 C 0.134 3.866 20 C -0.108 4.108 21 C -0.163 4.163 22 C -0.113 4.113 23 C -0.101 4.101 24 H 0.301 0.699 25 H 0.409 0.591 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.112 0.888 29 H 0.097 0.903 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.057 0.943 34 H 0.032 0.968 35 H 0.086 0.914 36 H 0.161 0.839 37 H 0.021 0.979 38 H 0.045 0.955 39 H 0.034 0.966 40 H 0.050 0.950 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.464 -5.940 -8.501 10.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.083 4.083 3 Si 0.715 3.285 4 H -0.185 1.185 5 H -0.217 1.217 6 H -0.202 1.202 7 C -0.509 4.509 8 H 0.107 0.893 9 N -0.121 5.121 10 C 0.252 3.748 11 O -0.437 6.437 12 C 0.282 3.718 13 O -0.396 6.396 14 N -0.369 5.369 15 C 0.028 3.972 16 C -0.187 4.187 17 C -0.214 4.214 18 C -0.209 4.209 19 C 0.031 3.969 20 C -0.146 4.146 21 C -0.200 4.200 22 C -0.151 4.151 23 C -0.139 4.139 24 H 0.118 0.882 25 H 0.245 0.755 26 H 0.088 0.912 27 H 0.086 0.914 28 H 0.130 0.870 29 H 0.115 0.885 30 H 0.113 0.887 31 H 0.114 0.886 32 H 0.115 0.885 33 H 0.075 0.925 34 H 0.050 0.950 35 H 0.105 0.895 36 H 0.177 0.823 37 H 0.040 0.960 38 H 0.064 0.936 39 H 0.053 0.947 40 H 0.069 0.931 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.145 -5.826 -8.914 10.650 hybrid contribution 0.501 0.794 0.033 0.940 sum 0.646 -5.032 -8.882 10.228 Atomic orbital electron populations 1.67664 1.07913 1.43884 1.28807 1.25863 0.94124 0.98900 0.89462 0.86676 0.80392 0.81379 0.80091 1.18467 1.21682 1.20184 1.19038 1.25961 0.89794 1.16067 0.89325 1.43059 1.37323 1.22726 1.08979 1.20167 0.84110 0.85903 0.84659 1.90619 1.36466 1.37441 1.79183 1.21060 0.79877 0.87445 0.83404 1.90710 1.35450 1.33680 1.79729 1.45815 1.53232 1.28366 1.09463 1.20844 0.99262 0.91853 0.85256 1.22486 1.01435 1.04718 0.90033 1.23086 0.98286 0.99044 1.01003 1.22941 1.03188 0.94095 1.00712 1.21986 0.90325 0.89978 0.94602 1.22379 0.99181 0.97477 0.95557 1.23799 0.93480 1.09200 0.93496 1.22212 0.97264 0.97785 0.97868 1.22381 0.94259 1.00024 0.97232 0.88239 0.75537 0.91180 0.91422 0.87045 0.88494 0.88679 0.88577 0.88490 0.92494 0.94953 0.89537 0.82347 0.96023 0.93608 0.94731 0.93079 0.92305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -21.11 9.60 55.53 0.53 -20.58 16 2 C 0.13 3.24 5.37 -17.40 -0.09 3.15 16 3 Si 0.89 20.74 29.96 -169.99 -5.09 15.64 16 4 H -0.26 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.38 -10.03 5.62 -15.15 -0.09 -10.11 16 8 H 0.09 2.35 8.03 -52.49 -0.42 1.92 16 9 N -0.40 -10.08 2.55 -107.31 -0.27 -10.35 16 10 C 0.47 11.64 7.24 -11.88 -0.09 11.56 16 11 O -0.56 -14.82 16.44 5.36 0.09 -14.73 16 12 C 0.50 10.57 7.26 -11.88 -0.09 10.48 16 13 O -0.52 -11.34 10.90 5.41 0.06 -11.28 16 14 N -0.71 -12.13 5.55 -60.93 -0.34 -12.47 16 15 C 0.15 2.06 5.95 -4.05 -0.02 2.04 16 16 C -0.17 -1.79 5.85 -90.62 -0.53 -2.32 16 17 C -0.18 -1.68 10.18 -26.73 -0.27 -1.95 16 18 C -0.17 -1.50 10.25 -26.73 -0.27 -1.78 16 19 C 0.13 3.09 2.84 -66.82 -0.19 2.90 16 20 C -0.11 -2.37 5.94 -25.03 -0.15 -2.52 16 21 C -0.16 -3.52 6.71 -24.70 -0.17 -3.68 16 22 C -0.11 -2.36 6.83 -25.07 -0.17 -2.54 16 23 C -0.10 -2.26 4.67 -25.61 -0.12 -2.38 16 24 H 0.30 6.97 8.61 -40.82 -0.35 6.61 16 25 H 0.41 6.64 7.87 -40.82 -0.32 6.32 16 26 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 27 H 0.07 0.95 7.88 -51.93 -0.41 0.54 16 28 H 0.11 1.14 8.04 -51.93 -0.42 0.73 16 29 H 0.10 0.93 8.03 -51.93 -0.42 0.51 16 30 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.06 1.32 6.93 -51.93 -0.36 0.96 16 34 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.09 2.00 6.16 -51.93 -0.32 1.68 16 36 H 0.16 3.76 3.43 -70.41 -0.24 3.51 16 37 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.05 1.27 7.30 -51.93 -0.38 0.89 16 41 H 0.06 1.29 6.60 -51.93 -0.34 0.95 16 LS Contribution 325.06 15.07 4.90 4.90 Total: -1.00 -28.54 325.06 -8.53 -37.07 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: -6.16 Total: 8.95 kcal Atomic # 6 Polarization: 5.10 SS G_CDS: -2.25 Total: 2.86 kcal Atomic # 7 Polarization: -43.32 SS G_CDS: -0.08 Total: -43.40 kcal Atomic # 8 Polarization: -26.16 SS G_CDS: 0.15 Total: -26.02 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.09 Total: 15.64 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -28.54 -8.53 -37.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191864552.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.604 kcal (2) G-P(sol) polarization free energy of solvation -28.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds