Wall clock time and date at job start Tue Mar 31 2020 02:22:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31012 * 1 3 3 Si 1.86800 * 119.99772 * 2 1 4 4 H 1.48499 * 109.47082 * 239.99713 * 3 2 1 5 5 H 1.48495 * 109.47430 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47119 * 120.00007 * 3 2 1 7 7 C 1.39583 * 120.00309 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00200 * 231.22335 * 7 2 1 9 9 N 1.36124 * 119.99843 * 51.21837 * 7 2 1 10 10 C 1.34779 * 120.00126 * 84.05664 * 9 7 2 11 11 O 1.21508 * 119.99642 * 1.83099 * 10 9 7 12 12 C 1.48825 * 120.00176 * 181.83525 * 10 9 7 13 13 O 1.21445 * 119.99916 * 354.31849 * 12 10 9 14 14 N 1.34782 * 120.00158 * 174.32388 * 12 10 9 15 15 C 1.46493 * 120.00042 * 180.02562 * 14 12 10 16 16 C 1.52999 * 109.47176 * 180.02562 * 15 14 12 17 17 C 1.53000 * 117.49585 * 243.62118 * 16 15 14 18 18 C 1.53004 * 60.00093 * 252.50815 * 17 16 15 19 19 C 1.46500 * 120.00018 * 264.05855 * 9 7 2 20 20 C 1.54263 * 110.03289 * 357.27683 * 19 9 7 21 21 C 1.54970 * 104.15896 * 95.75844 * 20 19 9 22 22 C 1.54887 * 102.77587 * 37.88794 * 21 20 19 23 23 C 1.53871 * 110.03524 * 114.49987 * 19 9 7 24 24 H 0.96997 * 120.00723 * 312.91082 * 1 2 3 25 25 H 0.96995 * 119.99403 * 359.97438 * 14 12 10 26 26 H 1.09005 * 109.47263 * 299.99402 * 15 14 12 27 27 H 1.09003 * 109.47557 * 59.99104 * 15 14 12 28 28 H 1.08998 * 115.54803 * 29.32337 * 16 15 14 29 29 H 1.09006 * 117.50234 * 359.97438 * 17 16 15 30 30 H 1.08999 * 117.50120 * 145.01622 * 17 16 15 31 31 H 1.08995 * 117.49604 * 252.51317 * 18 17 16 32 32 H 1.08999 * 117.49933 * 107.48642 * 18 17 16 33 33 H 1.09000 * 110.01574 * 235.88974 * 19 9 7 34 34 H 1.08999 * 110.48708 * 214.40291 * 20 19 9 35 35 H 1.08999 * 110.49228 * 337.05165 * 20 19 9 36 36 H 1.09002 * 110.71963 * 279.57651 * 21 20 19 37 37 H 1.09002 * 110.92504 * 156.29735 * 21 20 19 38 38 H 1.09004 * 110.48342 * 203.40908 * 22 21 20 39 39 H 1.08993 * 110.60002 * 80.82087 * 22 21 20 40 40 H 1.09000 * 110.03071 * 359.94937 * 23 19 9 41 41 H 1.08991 * 110.03704 * 121.37975 * 23 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2441 1.6178 0.0000 4 1 3.0978 1.6964 -1.2125 5 1 1.2791 2.7465 -0.0006 6 1 3.0978 1.6965 1.2125 7 6 2.0081 -1.2088 0.0005 8 1 2.7854 -1.3832 0.7297 9 7 1.7090 -2.1678 -0.9180 10 6 2.2595 -2.1187 -2.1473 11 8 3.0484 -1.2373 -2.4248 12 6 1.9010 -3.1440 -3.1647 13 8 1.1941 -4.0826 -2.8579 14 7 2.3609 -3.0309 -4.4266 15 6 2.0076 -4.0398 -5.4282 16 6 2.6544 -3.6780 -6.7667 17 6 1.7231 -3.3570 -7.9374 18 6 2.5009 -4.6744 -7.9177 19 6 0.7886 -3.2533 -0.5705 20 6 0.3519 -3.1244 0.9034 21 6 -0.9988 -2.3679 0.8338 22 6 -1.6612 -2.9655 -0.4323 23 6 -0.4906 -3.1521 -1.4196 24 1 -0.4851 0.5719 0.6152 25 1 2.9253 -2.2810 -4.6716 26 1 2.3676 -5.0160 -5.1033 27 1 0.9243 -4.0724 -5.5446 28 1 3.5910 -3.1243 -6.7018 29 1 0.6495 -3.4039 -7.7541 30 1 2.0468 -2.5918 -8.6429 31 1 3.3365 -4.7758 -8.6102 32 1 1.9393 -5.5876 -7.7212 33 1 1.2700 -4.2175 -0.7342 34 1 0.2144 -4.1099 1.3482 35 1 1.0839 -2.5481 1.4693 36 1 -0.8352 -1.2967 0.7151 37 1 -1.6038 -2.5691 1.7179 38 1 -2.3978 -2.2733 -0.8404 39 1 -2.1256 -3.9251 -0.2055 40 1 -0.4270 -2.2947 -2.0897 41 1 -0.6300 -4.0669 -1.9954 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000191864552.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:22:37 Heat of formation + Delta-G solvation = -22.108608 kcal Electronic energy + Delta-G solvation = -23180.408867 eV Core-core repulsion = 19869.094435 eV Total energy + Delta-G solvation = -3311.314432 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.68284 -39.65026 -38.42368 -38.31760 -35.42424 -35.00827 -33.81335 -29.39381 -28.84208 -28.29657 -27.01053 -24.20772 -23.24098 -22.03696 -21.54298 -21.02760 -20.74021 -19.26465 -18.11690 -17.69620 -17.02960 -16.68793 -16.50152 -16.24952 -15.87135 -15.66380 -15.07941 -14.87486 -14.74991 -14.42346 -13.97233 -13.88520 -13.35804 -13.32525 -12.73980 -12.62329 -12.43058 -12.36338 -12.26194 -12.01173 -11.78550 -11.50460 -11.43023 -11.37033 -11.32486 -11.09409 -10.88145 -10.79109 -10.07908 -10.04274 -8.94701 -7.60595 -6.15453 0.72293 1.18105 1.45864 1.58484 1.75470 2.12972 2.55191 2.59130 2.85670 3.22337 3.66142 3.78316 3.96859 4.08204 4.12263 4.21034 4.25506 4.44304 4.61876 4.68650 4.79863 4.83290 4.99278 5.01423 5.02448 5.09186 5.18220 5.21075 5.26253 5.27910 5.39439 5.46309 5.57016 5.68254 5.77534 5.89993 6.15472 6.29678 6.58910 6.66055 7.06085 7.14316 7.24307 8.01016 8.61131 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.018255 B = 0.005910 C = 0.004910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.426718 B = 4736.942241 C = 5701.329886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.102 3.898 3 Si 0.933 3.067 4 H -0.290 1.290 5 H -0.280 1.280 6 H -0.262 1.262 7 C -0.405 4.405 8 H 0.077 0.923 9 N -0.407 5.407 10 C 0.452 3.548 11 O -0.585 6.585 12 C 0.501 3.499 13 O -0.530 6.530 14 N -0.698 5.698 15 C 0.152 3.848 16 C -0.183 4.183 17 C -0.178 4.178 18 C -0.155 4.155 19 C 0.131 3.869 20 C -0.105 4.105 21 C -0.164 4.164 22 C -0.108 4.108 23 C -0.089 4.089 24 H 0.309 0.691 25 H 0.413 0.587 26 H 0.072 0.928 27 H 0.064 0.936 28 H 0.116 0.884 29 H 0.093 0.907 30 H 0.106 0.894 31 H 0.113 0.887 32 H 0.102 0.898 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.069 0.931 36 H 0.143 0.857 37 H 0.041 0.959 38 H 0.045 0.955 39 H 0.059 0.941 40 H 0.020 0.980 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.176 -6.682 -9.279 11.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C -0.109 4.109 3 Si 0.759 3.241 4 H -0.217 1.217 5 H -0.206 1.206 6 H -0.187 1.187 7 C -0.530 4.530 8 H 0.094 0.906 9 N -0.128 5.128 10 C 0.236 3.764 11 O -0.469 6.469 12 C 0.283 3.717 13 O -0.408 6.408 14 N -0.352 5.352 15 C 0.030 3.970 16 C -0.201 4.201 17 C -0.215 4.215 18 C -0.192 4.192 19 C 0.029 3.971 20 C -0.142 4.142 21 C -0.201 4.201 22 C -0.146 4.146 23 C -0.127 4.127 24 H 0.127 0.873 25 H 0.249 0.751 26 H 0.090 0.910 27 H 0.083 0.917 28 H 0.134 0.866 29 H 0.112 0.888 30 H 0.124 0.876 31 H 0.132 0.868 32 H 0.121 0.879 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.088 0.912 36 H 0.159 0.841 37 H 0.060 0.940 38 H 0.064 0.936 39 H 0.078 0.922 40 H 0.039 0.961 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.512 -6.575 -9.695 11.725 hybrid contribution 0.705 0.999 0.221 1.242 sum 0.192 -5.577 -9.474 10.995 Atomic orbital electron populations 1.67770 1.08098 1.44346 1.28470 1.26190 0.94750 1.00137 0.89823 0.85937 0.79525 0.79562 0.79045 1.21695 1.20581 1.18720 1.18995 1.26265 0.90986 1.16763 0.90586 1.43250 1.37484 1.22970 1.09105 1.20822 0.83671 0.86465 0.85471 1.90576 1.37664 1.38822 1.79880 1.20389 0.80514 0.86624 0.84160 1.90689 1.36230 1.33709 1.80128 1.45805 1.51853 1.28890 1.08602 1.21028 0.99379 0.90887 0.85752 1.22395 1.01889 1.06848 0.88963 1.23172 0.98012 1.00051 1.00245 1.23056 1.03301 0.93786 0.99052 1.22080 0.90209 0.89137 0.95668 1.22343 0.98883 0.98507 0.94477 1.23692 0.93667 1.08030 0.94727 1.22189 0.96528 0.99015 0.96846 1.22236 0.94706 0.98779 0.96971 0.87342 0.75093 0.90978 0.91746 0.86608 0.88814 0.87559 0.86843 0.87917 0.92757 0.92650 0.91222 0.84082 0.93994 0.93649 0.92247 0.96149 0.91827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -42.28 9.60 21.76 0.21 -42.07 16 2 C 0.10 5.22 5.37 85.14 0.46 5.68 16 3 Si 0.93 42.93 29.96 68.60 2.06 44.98 16 4 H -0.29 -14.79 7.11 99.48 0.71 -14.08 16 5 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 6 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 7 C -0.41 -21.58 5.62 84.35 0.47 -21.10 16 8 H 0.08 4.16 8.03 -2.91 -0.02 4.13 16 9 N -0.41 -20.90 2.55 -611.71 -1.56 -22.47 16 10 C 0.45 22.93 7.24 87.08 0.63 23.56 16 11 O -0.59 -32.08 16.44 -3.74 -0.06 -32.14 16 12 C 0.50 21.38 7.26 87.08 0.63 22.01 16 13 O -0.53 -23.05 10.90 -3.54 -0.04 -23.08 16 14 N -0.70 -23.54 5.55 -465.01 -2.58 -26.12 16 15 C 0.15 3.97 5.95 86.38 0.51 4.49 16 16 C -0.18 -3.57 5.85 -10.79 -0.06 -3.63 16 17 C -0.18 -2.99 10.18 30.60 0.31 -2.68 16 18 C -0.15 -2.29 10.25 30.60 0.31 -1.97 16 19 C 0.13 6.05 2.84 45.71 0.13 6.18 16 20 C -0.10 -4.47 5.94 31.70 0.19 -4.28 16 21 C -0.16 -6.82 6.71 31.91 0.21 -6.61 16 22 C -0.11 -4.30 6.83 31.67 0.22 -4.08 16 23 C -0.09 -3.92 4.67 31.32 0.15 -3.77 16 24 H 0.31 14.13 8.61 -92.71 -0.80 13.34 16 25 H 0.41 13.37 7.87 -92.71 -0.73 12.64 16 26 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 27 H 0.06 1.75 7.88 -2.39 -0.02 1.73 16 28 H 0.12 2.19 8.04 -2.39 -0.02 2.17 16 29 H 0.09 1.64 8.03 -2.38 -0.02 1.62 16 30 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.05 2.51 6.93 -2.39 -0.02 2.50 16 34 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.07 3.23 6.16 -2.39 -0.01 3.21 16 36 H 0.14 6.57 3.43 -38.89 -0.13 6.43 16 37 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.02 1.00 7.30 -2.39 -0.02 0.98 16 41 H 0.06 2.72 6.60 -2.39 -0.02 2.71 16 Total: -1.00 -60.87 325.06 2.35 -58.52 By element: Atomic # 1 Polarization: 28.43 SS G_CDS: 0.16 Total: 28.59 kcal Atomic # 6 Polarization: 9.62 SS G_CDS: 4.17 Total: 13.79 kcal Atomic # 7 Polarization: -86.72 SS G_CDS: -3.93 Total: -90.66 kcal Atomic # 8 Polarization: -55.12 SS G_CDS: -0.10 Total: -55.22 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.06 Total: 44.98 kcal Total: -60.87 2.35 -58.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191864552.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.412 kcal (2) G-P(sol) polarization free energy of solvation -60.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds