Wall clock time and date at job start Tue Mar 31 2020 02:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 119.99927 * 2 1 4 4 H 1.48498 * 109.47540 * 270.00087 * 3 2 1 5 5 H 1.48498 * 109.47303 * 30.00560 * 3 2 1 6 6 H 1.48505 * 109.47090 * 150.00061 * 3 2 1 7 7 C 1.37870 * 120.00132 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00229 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00143 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47649 * 180.02562 * 9 7 2 11 11 N 1.46501 * 109.47359 * 179.97438 * 10 9 7 12 12 C 1.33876 * 124.19477 * 89.97719 * 11 10 9 13 13 O 1.21536 * 123.79231 * 359.93766 * 12 11 10 14 14 N 1.34690 * 112.42048 * 179.97438 * 12 11 10 15 15 C 1.46806 * 106.36222 * 0.04657 * 14 12 11 16 16 C 1.50209 * 111.91770 * 238.80621 * 15 14 12 17 17 C 1.54387 * 112.22584 * 332.73484 * 16 15 14 18 18 C 1.54169 * 112.68897 * 318.51930 * 17 16 15 19 19 C 1.50425 * 112.51251 * 318.47341 * 18 17 16 20 20 C 1.54178 * 108.52735 * 94.43833 * 19 18 17 21 21 C 1.45667 * 112.42921 * 279.57825 * 20 19 18 22 22 C 1.34954 * 124.19783 * 269.94683 * 11 10 9 23 23 O 1.21239 * 127.27403 * 0.03157 * 22 11 10 24 24 H 0.97001 * 120.00006 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.47385 * 59.99573 * 9 7 2 26 26 H 1.09004 * 109.46733 * 299.99982 * 9 7 2 27 27 H 1.09007 * 109.46989 * 59.99662 * 10 9 7 28 28 H 1.09004 * 109.46987 * 299.99764 * 10 9 7 29 29 H 0.97005 * 126.82230 * 180.02562 * 14 12 11 30 30 H 1.08993 * 108.92849 * 93.43918 * 16 15 14 31 31 H 1.09003 * 108.92822 * 212.02555 * 16 15 14 32 32 H 1.08993 * 108.83758 * 197.69200 * 17 16 15 33 33 H 1.09001 * 108.83727 * 79.34471 * 17 16 15 34 34 H 1.09000 * 108.87039 * 197.69797 * 18 17 16 35 35 H 1.08997 * 108.87828 * 79.26396 * 18 17 16 36 36 H 1.09004 * 109.63013 * 334.73107 * 19 18 17 37 37 H 1.08995 * 109.63436 * 214.15542 * 19 18 17 38 38 H 1.08990 * 108.89108 * 158.81431 * 20 19 18 39 39 H 1.09003 * 108.88674 * 40.33739 * 20 19 18 40 40 H 1.08998 * 109.00521 * 300.96744 * 21 20 19 41 41 H 1.09004 * 109.00216 * 182.19868 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2452 -3.6620 -0.0015 11 7 1.5127 -4.9308 -0.0020 12 6 1.1366 -5.5820 -1.1096 13 8 1.3635 -5.1865 -2.2362 14 7 0.4778 -6.7243 -0.8352 15 6 0.4183 -6.8261 0.6281 16 6 1.0689 -8.0837 1.1295 17 6 1.0261 -9.2198 0.0850 18 6 -0.3276 -9.3029 -0.6481 19 6 -1.4970 -9.1076 0.2777 20 6 -1.9038 -7.6208 0.2462 21 6 -1.0517 -6.7934 1.0896 22 6 1.1339 -5.5884 1.1140 23 8 1.3264 -5.2552 2.2637 24 1 -0.4850 0.8401 0.0004 25 1 0.6247 -2.5563 -0.8919 26 1 0.6241 -2.5574 0.8881 27 1 2.8712 -3.6047 0.8891 28 1 2.8725 -3.6039 -0.8910 29 1 0.1144 -7.3544 -1.4770 30 1 2.1086 -7.8696 1.3767 31 1 0.5533 -8.4131 2.0317 32 1 1.2123 -10.1682 0.5888 33 1 1.8143 -9.0529 -0.6491 34 1 -0.4125 -10.2809 -1.1219 35 1 -0.3576 -8.5350 -1.4211 36 1 -1.2119 -9.3877 1.2918 37 1 -2.3332 -9.7231 -0.0537 38 1 -2.9345 -7.5296 0.5885 39 1 -1.8416 -7.2596 -0.7804 40 1 -1.1096 -7.1553 2.1161 41 1 -1.4112 -5.7649 1.0567 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194207056.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:23:32 Heat of formation + Delta-G solvation = -44.608621 kcal Electronic energy + Delta-G solvation = -23243.441302 eV Core-core repulsion = 19931.151196 eV Total energy + Delta-G solvation = -3312.290106 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.56733 -38.83621 -38.18443 -35.44795 -34.49560 -32.88426 -32.79415 -31.26962 -29.85746 -25.97144 -25.01360 -24.87413 -22.85275 -22.02724 -20.58003 -20.11031 -19.61414 -17.58441 -16.71323 -16.27942 -16.23699 -15.48202 -15.20700 -15.01713 -14.74606 -14.45338 -14.32201 -13.89589 -13.82613 -13.28247 -12.96106 -12.90126 -12.54631 -12.34250 -11.93708 -11.54382 -11.26650 -11.15524 -10.95728 -10.94577 -10.82484 -10.77719 -10.58425 -10.36609 -10.09169 -10.05017 -9.63261 -9.27435 -9.22151 -8.83031 -8.37332 -6.02169 -4.05848 1.95515 2.65962 3.33649 3.33860 3.39510 3.43076 3.46760 4.11697 4.25036 4.29930 4.46227 4.57757 4.74909 4.84330 4.94568 5.00260 5.06245 5.33950 5.34623 5.51687 5.53301 5.60066 5.61858 5.82381 5.83643 5.85718 5.87532 5.94216 6.03773 6.09381 6.13756 6.24765 6.35244 6.68637 7.01761 7.44565 7.59809 7.74252 7.77257 7.95125 8.30391 8.52410 8.99262 9.58119 11.09606 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.031640 B = 0.004354 C = 0.004319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.732905 B = 6428.966505 C = 6482.132339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.898 3.102 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.521 4.521 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.119 3.881 11 N -0.569 5.569 12 C 0.697 3.303 13 O -0.542 6.542 14 N -0.725 5.725 15 C 0.127 3.873 16 C -0.111 4.111 17 C -0.112 4.112 18 C -0.127 4.127 19 C -0.120 4.120 20 C -0.121 4.121 21 C -0.112 4.112 22 C 0.530 3.470 23 O -0.467 6.467 24 H 0.262 0.738 25 H 0.024 0.976 26 H 0.021 0.979 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.434 0.566 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.066 0.934 40 H 0.083 0.917 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.494 -21.807 1.478 21.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.725 3.275 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.560 4.560 8 H 0.078 0.922 9 C -0.025 4.025 10 C -0.001 4.001 11 N -0.313 5.313 12 C 0.398 3.602 13 O -0.415 6.415 14 N -0.399 5.399 15 C 0.035 3.965 16 C -0.149 4.149 17 C -0.150 4.150 18 C -0.165 4.165 19 C -0.158 4.158 20 C -0.159 4.159 21 C -0.151 4.151 22 C 0.316 3.684 23 O -0.336 6.336 24 H 0.071 0.929 25 H 0.042 0.958 26 H 0.039 0.961 27 H 0.100 0.900 28 H 0.102 0.898 29 H 0.288 0.712 30 H 0.090 0.910 31 H 0.104 0.896 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.102 0.898 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.346 -21.173 1.484 21.354 hybrid contribution 0.202 0.815 -0.301 0.892 sum -2.143 -20.358 1.183 20.505 Atomic orbital electron populations 1.69973 1.06151 1.26783 1.50200 1.24989 0.94869 0.99367 0.94968 0.86507 0.79787 0.83046 0.78157 1.20549 1.21175 1.19724 1.21002 0.93092 0.90325 1.51582 0.92241 1.19403 0.94284 0.90810 0.98021 1.22191 0.95648 0.79314 1.02898 1.46812 1.53017 1.24422 1.07093 1.16177 0.78590 0.80817 0.84643 1.90984 1.59795 1.70117 1.20608 1.46628 1.61522 1.24935 1.06849 1.20860 0.98013 0.95478 0.82098 1.21465 1.01564 0.92343 0.99549 1.21892 0.97312 0.97771 0.97987 1.21654 0.94714 1.01701 0.98390 1.21382 0.97618 0.96188 1.00576 1.20504 0.99687 0.94679 1.01032 1.20705 0.91354 1.02180 1.00828 1.20501 0.78015 0.84599 0.85288 1.90772 1.54017 1.70996 1.17859 0.92877 0.95802 0.96098 0.89990 0.89754 0.71155 0.90997 0.89602 0.91257 0.91619 0.91502 0.91929 0.91045 0.91505 0.91126 0.91579 0.89809 0.90715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.36 13.29 55.43 0.74 -26.63 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 21.98 29.54 -169.99 -5.02 16.96 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.52 -15.04 9.11 -34.44 -0.31 -15.35 16 8 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 9 C 0.01 0.34 5.30 -27.89 -0.15 0.19 16 10 C 0.12 2.62 5.65 -4.04 -0.02 2.60 16 11 N -0.57 -11.01 2.61 -120.84 -0.32 -11.33 16 12 C 0.70 12.78 8.63 -87.80 -0.76 12.03 16 13 O -0.54 -11.85 17.49 5.33 0.09 -11.76 16 14 N -0.73 -9.54 4.20 -54.21 -0.23 -9.77 16 15 C 0.13 1.58 0.85 -133.47 -0.11 1.47 16 16 C -0.11 -1.05 4.94 -27.39 -0.14 -1.18 16 17 C -0.11 -0.82 5.40 -25.39 -0.14 -0.96 16 18 C -0.13 -0.84 5.27 -27.41 -0.14 -0.98 16 19 C -0.12 -0.79 5.60 -27.40 -0.15 -0.94 16 20 C -0.12 -1.04 5.18 -29.58 -0.15 -1.19 16 21 C -0.11 -1.23 4.61 -29.61 -0.14 -1.36 16 22 C 0.53 9.21 6.63 -10.76 -0.07 9.14 16 23 O -0.47 -9.23 17.77 5.59 0.10 -9.13 16 24 H 0.26 7.53 8.31 -40.82 -0.34 7.20 16 25 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.08 1.75 8.01 -51.93 -0.42 1.33 16 28 H 0.08 1.84 7.87 -51.93 -0.41 1.44 16 29 H 0.43 4.67 4.50 -40.82 -0.18 4.49 16 30 H 0.07 0.74 7.77 -51.93 -0.40 0.34 16 31 H 0.09 0.69 6.69 -51.93 -0.35 0.35 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.06 0.46 3.94 -51.93 -0.20 0.26 16 36 H 0.07 0.44 6.95 -51.93 -0.36 0.08 16 37 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.61 6.48 -51.93 -0.34 0.28 16 40 H 0.08 0.80 7.53 -51.93 -0.39 0.41 16 41 H 0.07 0.99 7.93 -51.93 -0.41 0.58 16 LS Contribution 319.55 15.07 4.82 4.82 Total: -1.00 -33.96 319.55 -8.17 -42.13 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -5.96 Total: -0.41 kcal Atomic # 6 Polarization: 7.49 SS G_CDS: -2.38 Total: 5.11 kcal Atomic # 7 Polarization: -47.92 SS G_CDS: 0.19 Total: -47.72 kcal Atomic # 8 Polarization: -21.08 SS G_CDS: 0.19 Total: -20.88 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -33.96 -8.17 -42.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194207056.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.477 kcal (2) G-P(sol) polarization free energy of solvation -33.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds